Rh1CG088700

Cysteine desulfurase 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0006305
Physical Location & Seq
Forward (+)
18732866 .. 18733653
788 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG088700.1

Sequence Viewer

Length: 348 bp
ATGTATGGTATTGATAAGATAGGGCTGGCCAAATATCTATATGATAGTCTTTGTTCAATACCCAACATTCGAATTTATGGTCCAGTGCCTTCAGAAGATGTGCACCGCGCTGCTCTTTGTTCTTTCAATGTTGAGAATATACACCCTACAGATTTGGCAACTCTTCTTGACCAACAGCATGGAGTGGCTATCCGATCAGGTCACCATTGCGCCCAACCCCTTCATCGACATTTAGGAGTCAGTGCAAGTGCACGTGCGAGTCTTTACCTCTACAACACTAGAAAGGATGTTGATGACTCTATCCATGTCCTAAATGACACAGTCAGATTCTTTAATTCTTTCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00450 ko01100 map00450 map01100
Pfam Domains
Protein Families
Aminotran_5

Protein Analysis

115

Amino Acids

12.89

Weight (kDa)

7.08

Isoelectric Point (pI)

34.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_5 PF00266 9 - 98 1.5e-26 Aminotransferase class-V
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 108
AciI CCGC 1 cut(s) 106
AcoI YGGCCR 1 cut(s) 27
AcsI RAATTY 1 cut(s) 72
AcuI CTGAAG 1 cut(s) 75
AcvI CACGTG 1 cut(s) 254
AgsI TTSAA 3 cut(s) 57, 127, 343
Alw21I GWGCWC 2 cut(s) 105, 253
Alw44I GTGCAC 2 cut(s) 101, 249
AoxI GGCC 1 cut(s) 27
ApaLI GTGCAC 2 cut(s) 101, 249
ApeKI GCWGC 1 cut(s) 110
ApoI RAATTY 1 cut(s) 72
ArsI GACNNNNNNTTYG 2 cut(s) 64, 96
AspLEI GCGC 2 cut(s) 110, 212
AspS9I GGNCC 1 cut(s) 80
AsuHPI GGTGA 1 cut(s) 194
AsuII TTCGAA 1 cut(s) 70
AvaII GGWCC 1 cut(s) 80
BaeGI GKGCMC 2 cut(s) 105, 253
BalI TGGCCA 1 cut(s) 29
BbrPI CACGTG 1 cut(s) 254
Bbv12I GWGCWC 2 cut(s) 105, 253
BbvI GCAGC 1 cut(s) 97
BfaI CTAG 1 cut(s) 279
BfmI CTRYAG 1 cut(s) 147
BisI GCNGC 1 cut(s) 111
BlsI GCNGC 1 cut(s) 112
Bme18I GGWCC 1 cut(s) 80
BmgT120I GGNCC 1 cut(s) 80
Bpu14I TTCGAA 1 cut(s) 70
BsaAI YACGTR 1 cut(s) 254
Bse1I ACTGG 1 cut(s) 83
Bse3DI GCAATG 1 cut(s) 205
BseGI GGATG 1 cut(s) 292
BseMI GCAATG 1 cut(s) 205
BseNI ACTGG 1 cut(s) 83
BseSI GKGCMC 2 cut(s) 105, 253
BseXI GCAGC 1 cut(s) 97
Bsh1236I CGCG 1 cut(s) 108
BshFI GGCC 1 cut(s) 29
BsiHKAI GWGCWC 2 cut(s) 105, 253
BsnI GGCC 1 cut(s) 29
Bsp119I TTCGAA 1 cut(s) 70
Bsp1286I GDGCHC 2 cut(s) 105, 253
Bsp143I GATC 1 cut(s) 194
BspACI CCGC 1 cut(s) 106
BspANI GGCC 1 cut(s) 29
BspFNI CGCG 1 cut(s) 108
BspT104I TTCGAA 1 cut(s) 70
BsrDI GCAATG 1 cut(s) 205
BsrI ACTGG 1 cut(s) 83
BssMI GATC 1 cut(s) 194
Bst4CI ACNGT 1 cut(s) 322
Bst6I CTCTTC 1 cut(s) 168
BstBAI YACGTR 1 cut(s) 254
BstBI TTCGAA 1 cut(s) 70
BstC8I GCNNGC 1 cut(s) 27
BstEII GGTNACC 1 cut(s) 200
BstF5I GGATG 1 cut(s) 292
BstFNI CGCG 1 cut(s) 108
BstHHI GCGC 2 cut(s) 110, 212
BstKTI GATC 1 cut(s) 197
BstMBI GATC 1 cut(s) 194
BstPI GGTNACC 1 cut(s) 200
BstSFI CTRYAG 1 cut(s) 147
BstSLI GKGCMC 2 cut(s) 105, 253
BstUI CGCG 1 cut(s) 108
BstV1I GCAGC 1 cut(s) 97
BstXI CCANNNNNNTGG 1 cut(s) 179
BsuRI GGCC 1 cut(s) 29
BtsCI GGATG 1 cut(s) 292
BtsIMutI CAGTG 2 cut(s) 90, 247
Cac8I GCNNGC 1 cut(s) 27
CfoI GCGC 2 cut(s) 110, 212
Cfr13I GGNCC 1 cut(s) 80
CviAII CATG 2 cut(s) 179, 305
CviJI RGCY 3 cut(s) 25, 29, 188
CviKI_1 RGCY 3 cut(s) 25, 29, 188
DpnI GATC 1 cut(s) 196
DpnII GATC 1 cut(s) 194
EaeI YGGCCR 1 cut(s) 27
Eam1104I CTCTTC 1 cut(s) 168
EarI CTCTTC 1 cut(s) 168
Eco47I GGWCC 1 cut(s) 80
Eco57I CTGAAG 1 cut(s) 75
Eco72I CACGTG 1 cut(s) 254
Eco91I GGTNACC 1 cut(s) 200
EcoO65I GGTNACC 1 cut(s) 200
FaeI CATG 2 cut(s) 182, 308
FaiI YATR 7 cut(s) 6, 40, 42, 78, 140, 180, 306
FatI CATG 2 cut(s) 178, 304
Fnu4HI GCNGC 1 cut(s) 111
FokI GGATG 1 cut(s) 299
Fsp4HI GCNGC 1 cut(s) 111
FspBI CTAG 1 cut(s) 279
GlaI GCGC 2 cut(s) 109, 211
GluI GCNGC 1 cut(s) 111
HaeIII GGCC 1 cut(s) 29
HhaI GCGC 2 cut(s) 110, 212
Hin1II CATG 2 cut(s) 182, 308
Hin6I GCGC 2 cut(s) 108, 210
HinP1I GCGC 2 cut(s) 108, 210
HinfI GANTC 4 cut(s) 237, 259, 296, 327
HphI GGTGA 1 cut(s) 194
Hpy166II GTNNAC 2 cut(s) 103, 251
Hpy188I TCNGA 3 cut(s) 94, 194, 326
Hpy188III TCNNGA 1 cut(s) 167
Hpy8I GTNNAC 2 cut(s) 103, 251
HpyAV CCTTC 2 cut(s) 99, 230
HpyCH4III ACNGT 1 cut(s) 322
HpyCH4IV ACGT 1 cut(s) 253
HpyCH4V TGCA 3 cut(s) 103, 245, 251
HpySE526I ACGT 1 cut(s) 253
Hsp92II CATG 2 cut(s) 182, 308
HspAI GCGC 2 cut(s) 108, 210
Kzo9I GATC 1 cut(s) 194
LpnPI CCDG 3 cut(s) 11, 96, 183
Lsp1109I GCAGC 1 cut(s) 97
MaeI CTAG 1 cut(s) 279
MaeII ACGT 1 cut(s) 253
MaeIII GTNAC 1 cut(s) 200
MalI GATC 1 cut(s) 196
MboI GATC 1 cut(s) 194
MboII GAAGA 2 cut(s) 107, 155
MhlI GDGCHC 2 cut(s) 105, 253
MlsI TGGCCA 1 cut(s) 29
MluCI AATT 2 cut(s) 72, 334
MluNI TGGCCA 1 cut(s) 29
MlyI GAGTC 3 cut(s) 246, 268, 290
MnlI CCTC 1 cut(s) 278
Mox20I TGGCCA 1 cut(s) 29
MscI TGGCCA 1 cut(s) 29
MseI TTAA 1 cut(s) 333
Msp20I TGGCCA 1 cut(s) 29
MvnI CGCG 1 cut(s) 108
NdeII GATC 1 cut(s) 194
NlaIII CATG 2 cut(s) 182, 308
NmuCI GTSAC 1 cut(s) 200
NspV TTCGAA 1 cut(s) 70
PfeI GAWTC 1 cut(s) 327
PflFI GACNNNGTC 1 cut(s) 320
PkrI GCNGC 1 cut(s) 112
PleI GAGTC 3 cut(s) 245, 267, 290
PmaCI CACGTG 1 cut(s) 254
PmlI CACGTG 1 cut(s) 254
PpsI GAGTC 3 cut(s) 245, 267, 290
Ppu21I YACGTR 1 cut(s) 254
PspCI CACGTG 1 cut(s) 254
PspEI GGTNACC 1 cut(s) 200
PspPI GGNCC 1 cut(s) 80
PsyI GACNNNGTC 1 cut(s) 320
SaqAI TTAA 1 cut(s) 333
SatI GCNGC 1 cut(s) 111
Sau3AI GATC 1 cut(s) 194
Sau96I GGNCC 1 cut(s) 80
SchI GAGTC 3 cut(s) 246, 268, 290
SduI GDGCHC 2 cut(s) 105, 253
SetI ASST 3 cut(s) 202, 256, 270
SfcI CTRYAG 1 cut(s) 147
SfuI TTCGAA 1 cut(s) 70
SinI GGWCC 1 cut(s) 80
Sse9I AATT 2 cut(s) 72, 334
SsiI CCGC 1 cut(s) 106
SspMI CTAG 1 cut(s) 279
TaaI ACNGT 1 cut(s) 322
TaiI ACGT 1 cut(s) 256
TaqI TCGA 2 cut(s) 70, 226
TasI AATT 2 cut(s) 72, 334
TfiI GAWTC 1 cut(s) 327
Tru1I TTAA 1 cut(s) 333
Tru9I TTAA 1 cut(s) 333
TscAI CASTG 2 cut(s) 90, 247
TseFI GTSAC 1 cut(s) 200
TseI GCWGC 1 cut(s) 110
Tsp45I GTSAC 1 cut(s) 200
TspDTI ATGAA 1 cut(s) 212
TspRI CASTG 2 cut(s) 90, 247
Tth111I GACNNNGTC 1 cut(s) 320
VneI GTGCAC 2 cut(s) 101, 249
VpaK11BI GGWCC 1 cut(s) 80
XapI RAATTY 1 cut(s) 72
XspI CTAG 1 cut(s) 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.