Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0006305

Physical Location & Seq

Genomic Coordinates Reverse (-)

37322612 .. 37324806

Gene Structure 2195 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g37350.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGTATTTTATCGATCATTCCACTTACCAAGAACCTCCATCTAGATTTGAGGCTGGAACACCAGCAATCGGGGAAGCAATTGGGTTAGGAGCTGCTATTGATTATTTGTCAGGACTTGGTATGCAAAGGATACATGATTATGAGATGTTTCTTGGTAAATATCTATACGAGAGCCTTCAATCTGTCCCCAATATTCGCATTTATGGTCCAGCCCCTTCAGAACACATCTTCCGGGCTGCCCTATGTTCTTTCAACGTTGAGAATATACACCCTACAGATCTGGCAACTTTTCTTGACCAACAGCACGGAGTGGCTATCCGATCAGGTCACCATTGCGCCCAACCCCTTCATCGGCAGTTAGGAGTCAGCGCGAGTGCACGTGCAAGTCTTCACTTGTACAACACCGTAGAAGATGTCGATGACTTGATCCGGGCACTCAACGACACGGTCAGCTTCTTCAATTCTTTTAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00450 ko01100 map00450 map01100

Pfam Domains

Protein Families

Aminotran_5

Protein Analysis

158

Amino Acids

17.48

Weight (kDa)

5.62

Isoelectric Point (pI)

40.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006305)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08490
fragaria_vesca	FvH4_7g04510 FvH4_7g04510 FvH4_7g04510 FvH4_7g04510 FvH4_7g04510 FvH4_7g04510 FvH4_7g04510 FvH4_7g04510 FvH4_7g04510 FvH4_7g04540
malus_domestica	MD15G1421300.v1.1
prunus_persica	Prupe.1G566600_v2.0.a1
pyrus_communis	pycom15g37350
rosa_chinensis	RchiOBHm_Chr1g0329781
rosa_laevigata	RLG00000029865
rosa_multiflora	Rmu_sc0003459.1_g000017 Rmu_sc0007681.1_g000009 Rmu_sc0013927.1_g000001
rosa_roxburghii	Rroxscaffold_4G00320710
rosa_rugosa	Rorug01G0083000
rosa_samantha	Rh1AG101300 Rh1BG080400 Rh1CG088700 Rh1CG096600 Rh1DG104500
rosa_wichuraiana	Rw1G007990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	371
AclI	AACGTT	1 cut(s)	255
AclWI	GGATC	1 cut(s)	421
AcuI	CTGAAG	1 cut(s)	201
AcvI	CACGTG	1 cut(s)	380
AdeI	CACNNNGTG	1 cut(s)	310
AfaI	GTAC	1 cut(s)	398
AfiI	CCNNNNNNNGG	2 cut(s)	68, 351
AgsI	TTSAA	3 cut(s)	179, 253, 460
AloI	GAACNNNNNNTCC	2 cut(s)	213, 245
AluBI	AGCT	2 cut(s)	92, 453
AluI	AGCT	2 cut(s)	92, 453
Alw21I	GWGCWC	1 cut(s)	379
Alw44I	GTGCAC	1 cut(s)	375
AlwI	GGATC	1 cut(s)	421
ApaLI	GTGCAC	1 cut(s)	375
ApeKI	GCWGC	2 cut(s)	92, 236
AspLEI	GCGC	2 cut(s)	338, 371
AspS9I	GGNCC	1 cut(s)	206
AsuC2I	CCSGG	2 cut(s)	233, 431
AsuHPI	GGTGA	1 cut(s)	320
AvaII	GGWCC	1 cut(s)	206
BaeGI	GKGCMC	2 cut(s)	379, 436
BbrPI	CACGTG	1 cut(s)	380
BbsI	GAAGAC	1 cut(s)	380
Bbv12I	GWGCWC	1 cut(s)	379
BbvI	GCAGC	2 cut(s)	79, 223
BccI	CCATC	1 cut(s)	46
BciVI	GTATCC	1 cut(s)	123
BcnI	CCSGG	2 cut(s)	233, 431
BfaI	CTAG	1 cut(s)	42
BfmI	CTRYAG	1 cut(s)	273
BfuI	GTATCC	1 cut(s)	123
BglII	AGATCT	1 cut(s)	277
BisI	GCNGC	2 cut(s)	93, 237
BlsI	GCNGC	2 cut(s)	94, 238
Bme1390I	CCNGG	2 cut(s)	233, 431
Bme18I	GGWCC	1 cut(s)	206
BmgT120I	GGNCC	1 cut(s)	206
BmrFI	CCNGG	2 cut(s)	233, 431
BpiI	GAAGAC	1 cut(s)	380
BpuMI	CCSGG	2 cut(s)	233, 431
Bsa29I	ATCGAT	1 cut(s)	12
BsaAI	YACGTR	1 cut(s)	380
Bsc4I	CCNNNNNNNGG	2 cut(s)	68, 351
Bse3DI	GCAATG	1 cut(s)	331
BseCI	ATCGAT	1 cut(s)	12
BseLI	CCNNNNNNNGG	2 cut(s)	68, 351
BseMI	GCAATG	1 cut(s)	331
BseSI	GKGCMC	2 cut(s)	379, 436
BseXI	GCAGC	2 cut(s)	79, 223
Bsh1236I	CGCG	1 cut(s)	371
BshVI	ATCGAT	1 cut(s)	12
BsiHKAI	GWGCWC	1 cut(s)	379
BsiSI	CCGG	2 cut(s)	232, 430
BslFI	GGGAC	1 cut(s)	170
BslI	CCNNNNNNNGG	2 cut(s)	68, 351
BsmFI	GGGAC	1 cut(s)	170
Bsp1286I	GDGCHC	2 cut(s)	379, 436
Bsp1407I	TGTACA	1 cut(s)	396
Bsp143I	GATC	4 cut(s)	13, 277, 320, 426
BspDI	ATCGAT	1 cut(s)	12
BspFNI	CGCG	1 cut(s)	371
BspPI	GGATC	1 cut(s)	421
BsrDI	GCAATG	1 cut(s)	331
BsrGI	TGTACA	1 cut(s)	396
BssMI	GATC	4 cut(s)	13, 277, 320, 426
Bst4CI	ACNGT	2 cut(s)	406, 448
BstAUI	TGTACA	1 cut(s)	396
BstBAI	YACGTR	1 cut(s)	380
BstEII	GGTNACC	1 cut(s)	326
BstFNI	CGCG	1 cut(s)	371
BstHHI	GCGC	2 cut(s)	338, 371
BstKTI	GATC	4 cut(s)	16, 280, 323, 429
BstMBI	GATC	4 cut(s)	13, 277, 320, 426
BstPI	GGTNACC	1 cut(s)	326
BstSCI	CCNGG	2 cut(s)	231, 429
BstSFI	CTRYAG	1 cut(s)	273
BstSLI	GKGCMC	2 cut(s)	379, 436
BstUI	CGCG	1 cut(s)	371
BstV1I	GCAGC	2 cut(s)	79, 223
BstV2I	GAAGAC	1 cut(s)	380
BstX2I	RGATCY	1 cut(s)	277
BstYI	RGATCY	1 cut(s)	277
Bsu15I	ATCGAT	1 cut(s)	12
BsuI	GTATCC	1 cut(s)	123
BsuTUI	ATCGAT	1 cut(s)	12
CfoI	GCGC	2 cut(s)	338, 371
Cfr13I	GGNCC	1 cut(s)	206
ClaI	ATCGAT	1 cut(s)	12
Csp6I	GTAC	1 cut(s)	397
CviAII	CATG	1 cut(s)	134
CviJI	RGCY	7 cut(s)	53, 92, 174, 212, 236, 314, 453
CviKI_1	RGCY	7 cut(s)	53, 92, 174, 212, 236, 314, 453
CviQI	GTAC	1 cut(s)	397
DpnI	GATC	4 cut(s)	15, 279, 322, 428
DpnII	GATC	4 cut(s)	13, 277, 320, 426
DraIII	CACNNNGTG	1 cut(s)	310
Eco47I	GGWCC	1 cut(s)	206
Eco57I	CTGAAG	1 cut(s)	201
Eco72I	CACGTG	1 cut(s)	380
Eco91I	GGTNACC	1 cut(s)	326
EcoO65I	GGTNACC	1 cut(s)	326
FaeI	CATG	1 cut(s)	137
FaiI	YATR	7 cut(s)	122, 135, 141, 166, 204, 244, 266
FaqI	GGGAC	1 cut(s)	170
FatI	CATG	1 cut(s)	133
Fnu4HI	GCNGC	2 cut(s)	93, 237
Fsp4HI	GCNGC	2 cut(s)	93, 237
FspBI	CTAG	1 cut(s)	42
GlaI	GCGC	2 cut(s)	337, 370
GluI	GCNGC	2 cut(s)	93, 237
HapII	CCGG	2 cut(s)	232, 430
HhaI	GCGC	2 cut(s)	338, 371
Hin1II	CATG	1 cut(s)	137
Hin6I	GCGC	2 cut(s)	336, 369
HinP1I	GCGC	2 cut(s)	336, 369
HinfI	GANTC	1 cut(s)	363
HpaII	CCGG	2 cut(s)	232, 430
HphI	GGTGA	1 cut(s)	320
Hpy166II	GTNNAC	1 cut(s)	377
Hpy188I	TCNGA	2 cut(s)	220, 320
Hpy188III	TCNNGA	3 cut(s)	42, 111, 293
Hpy8I	GTNNAC	1 cut(s)	377
HpyAV	CCTTC	3 cut(s)	185, 225, 356
HpyCH4III	ACNGT	2 cut(s)	406, 448
HpyCH4IV	ACGT	2 cut(s)	255, 379
HpyCH4V	TGCA	3 cut(s)	124, 377, 383
HpySE526I	ACGT	2 cut(s)	255, 379
Hsp92II	CATG	1 cut(s)	137
HspAI	GCGC	2 cut(s)	336, 369
Kzo9I	GATC	4 cut(s)	13, 277, 320, 426
LmnI	GCTCC	1 cut(s)	89
LpnPI	CCDG	8 cut(s)	39, 75, 96, 222, 245, 266, 309, 443
Lsp1109I	GCAGC	2 cut(s)	79, 223
MaeI	CTAG	1 cut(s)	42
MaeII	ACGT	2 cut(s)	255, 379
MaeIII	GTNAC	1 cut(s)	326
MalI	GATC	4 cut(s)	15, 279, 322, 428
MboI	GATC	4 cut(s)	13, 277, 320, 426
MboII	GAAGA	4 cut(s)	220, 380, 422, 448
MfeI	CAATTG	1 cut(s)	78
MflI	RGATCY	1 cut(s)	277
MhlI	GDGCHC	2 cut(s)	379, 436
MluCI	AATT	2 cut(s)	78, 460
MlyI	GAGTC	1 cut(s)	372
MnlI	CCTC	2 cut(s)	43, 45
MseI	TTAA	1 cut(s)	468
MslI	CAYNNNNRTG	1 cut(s)	138
MspI	CCGG	2 cut(s)	232, 430
MspR9I	CCNGG	2 cut(s)	233, 431
MunI	CAATTG	1 cut(s)	78
MvnI	CGCG	1 cut(s)	371
NciI	CCSGG	2 cut(s)	233, 431
NdeII	GATC	4 cut(s)	13, 277, 320, 426
NlaIII	CATG	1 cut(s)	137
NmuCI	GTSAC	1 cut(s)	326
PflFI	GACNNNGTC	1 cut(s)	446
PkrI	GCNGC	2 cut(s)	94, 238
PleI	GAGTC	1 cut(s)	371
PmaCI	CACGTG	1 cut(s)	380
PmlI	CACGTG	1 cut(s)	380
PpsI	GAGTC	1 cut(s)	371
Ppu21I	YACGTR	1 cut(s)	380
Psp1406I	AACGTT	1 cut(s)	255
PspCI	CACGTG	1 cut(s)	380
PspEI	GGTNACC	1 cut(s)	326
PspPI	GGNCC	1 cut(s)	206
PsuI	RGATCY	1 cut(s)	277
PsyI	GACNNNGTC	1 cut(s)	446
RsaI	GTAC	1 cut(s)	398
RsaNI	GTAC	1 cut(s)	397
RseI	CAYNNNNRTG	1 cut(s)	138
SaqAI	TTAA	1 cut(s)	468
SatI	GCNGC	2 cut(s)	93, 237
Sau3AI	GATC	4 cut(s)	13, 277, 320, 426
Sau96I	GGNCC	1 cut(s)	206
SchI	GAGTC	1 cut(s)	372
ScrFI	CCNGG	2 cut(s)	233, 431
SduI	GDGCHC	2 cut(s)	379, 436
SetI	ASST	6 cut(s)	37, 94, 258, 328, 382, 455
SfcI	CTRYAG	1 cut(s)	273
SinI	GGWCC	1 cut(s)	206
SmiMI	CAYNNNNRTG	1 cut(s)	138
Sse9I	AATT	2 cut(s)	78, 460
SspI	AATATT	1 cut(s)	193
SspMI	CTAG	1 cut(s)	42
StyD4I	CCNGG	2 cut(s)	231, 429
TaaI	ACNGT	2 cut(s)	406, 448
TaiI	ACGT	2 cut(s)	258, 382
TaqI	TCGA	2 cut(s)	12, 417
TasI	AATT	2 cut(s)	78, 460
TatI	WGTACW	1 cut(s)	396
Tru1I	TTAA	1 cut(s)	468
Tru9I	TTAA	1 cut(s)	468
TseFI	GTSAC	1 cut(s)	326
TseI	GCWGC	2 cut(s)	92, 236
Tsp45I	GTSAC	1 cut(s)	326
TspDTI	ATGAA	1 cut(s)	338
TspGWI	ACGGA	1 cut(s)	321
Tth111I	GACNNNGTC	1 cut(s)	446
VneI	GTGCAC	1 cut(s)	375
VpaK11BI	GGWCC	1 cut(s)	206
XbaI	TCTAGA	1 cut(s)	41
XspI	CTAG	1 cut(s)	42

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.