Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007681.1

Orthogroup ID

OG0006305

Physical Location & Seq

Genomic Coordinates Forward (+)

37011 .. 40215

Gene Structure 3205 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007681.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

atgatgacactggaaggagtggccctaaaattgcccccatattcattccccatgataacaaccgctgcctgccgcaccgctcacaccttccgacgttttctcgtcttggcttcaactgctgcagctccacccgcatccctttcactcgctcaaaagactggtgccattttgaaatttgtggaactaaatgaagatggagttccagatgtggaaaagttaaaagatatgctttcgagaaagaaaaaacttgtacttgttcatcatgtctcaaatgtgctagaagatgcgcaccgcgctgctctttggtctttcaatgttgagaatatacaccctacagatttggcaactcgtcttgaccaacagcatggagtggctctcagatcaggtcaccattgcgcccaacggtcccaaccccttcatcgacatttaggagtcggtgcaagtgcacgtgcacgtgcgagtctttacttctacaacactagagaggatgttgatgactttatccatgccctaaatgacatagtcagattctttaattctttcaagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00450 ko01100 map00450 map01100

Pfam Domains

Protein Families

Aminotran_5

Protein Analysis

182

Amino Acids

20.32

Weight (kDa)

9.42

Isoelectric Point (pI)

34.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006305)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08490
fragaria_vesca	FvH4_7g04510 FvH4_7g04510 FvH4_7g04510 FvH4_7g04510 FvH4_7g04510 FvH4_7g04510 FvH4_7g04510 FvH4_7g04510 FvH4_7g04510 FvH4_7g04540
malus_domestica	MD15G1421300.v1.1
prunus_persica	Prupe.1G566600_v2.0.a1
pyrus_communis	pycom15g37350
rosa_chinensis	RchiOBHm_Chr1g0329781
rosa_laevigata	RLG00000029865
rosa_multiflora	Rmu_sc0003459.1_g000017 Rmu_sc0007681.1_g000009 Rmu_sc0013927.1_g000001
rosa_roxburghii	Rroxscaffold_4G00320710
rosa_rugosa	Rorug01G0083000
rosa_samantha	Rh1AG101300 Rh1BG080400 Rh1CG088700 Rh1CG096600 Rh1DG104500
rosa_wichuraiana	Rw1G007990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	288
AccB1I	GGYRCC	1 cut(s)	161
AccBSI	CCGCTC	1 cut(s)	80
AccII	CGCG	1 cut(s)	294
AciI	CCGC	5 cut(s)	63, 73, 78, 132, 292
AcsI	RAATTY	1 cut(s)	173
AcvI	CACGTG	2 cut(s)	449, 455
AfaI	GTAC	1 cut(s)	252
AgsI	TTSAA	4 cut(s)	114, 172, 313, 544
AluBI	AGCT	1 cut(s)	125
AluI	AGCT	1 cut(s)	125
Alw21I	GWGCWC	2 cut(s)	448, 454
Alw26I	GTCTC	1 cut(s)	271
Alw44I	GTGCAC	2 cut(s)	444, 450
AoxI	GGCC	1 cut(s)	21
ApaLI	GTGCAC	2 cut(s)	444, 450
ApeKI	GCWGC	4 cut(s)	65, 119, 122, 296
ApoI	RAATTY	1 cut(s)	173
AspLEI	GCGC	3 cut(s)	289, 296, 398
AspS9I	GGNCC	2 cut(s)	22, 405
AsuHPI	GGTGA	1 cut(s)	380
AvaII	GGWCC	1 cut(s)	405
BaeGI	GKGCMC	2 cut(s)	448, 454
BanI	GGYRCC	1 cut(s)	161
BbrPI	CACGTG	2 cut(s)	449, 455
Bbv12I	GWGCWC	2 cut(s)	448, 454
BbvI	GCAGC	4 cut(s)	52, 106, 134, 283
BccI	CCATC	1 cut(s)	188
BcoDI	GTCTC	1 cut(s)	271
BfaI	CTAG	2 cut(s)	278, 480
BfmI	CTRYAG	2 cut(s)	120, 333
BisI	GCNGC	5 cut(s)	66, 73, 120, 123, 297
BlsI	GCNGC	5 cut(s)	67, 74, 121, 124, 298
Bme18I	GGWCC	1 cut(s)	405
BmgT120I	GGNCC	2 cut(s)	22, 405
BmiI	GGNNCC	2 cut(s)	163, 407
BmsI	GCATC	2 cut(s)	143, 274
BplI	GAGNNNNNCTC	2 cut(s)	360, 392
BsaAI	YACGTR	2 cut(s)	449, 455
Bse1I	ACTGG	2 cut(s)	15, 163
Bse3DI	GCAATG	1 cut(s)	391
BseGI	GGATG	2 cut(s)	134, 493
BseMI	GCAATG	1 cut(s)	391
BseMII	CTCAG	1 cut(s)	391
BseNI	ACTGG	2 cut(s)	15, 163
BseSI	GKGCMC	2 cut(s)	448, 454
BseXI	GCAGC	4 cut(s)	52, 106, 134, 283
Bsh1236I	CGCG	1 cut(s)	294
BshFI	GGCC	1 cut(s)	23
BshNI	GGYRCC	1 cut(s)	161
BsiHKAI	GWGCWC	2 cut(s)	448, 454
BslFI	GGGAC	1 cut(s)	391
BsmAI	GTCTC	1 cut(s)	271
BsmFI	GGGAC	1 cut(s)	391
BsnI	GGCC	1 cut(s)	23
Bsp1286I	GDGCHC	2 cut(s)	448, 454
Bsp143I	GATC	1 cut(s)	380
BspACI	CCGC	5 cut(s)	63, 73, 78, 132, 292
BspANI	GGCC	1 cut(s)	23
BspCNI	CTCAG	1 cut(s)	390
BspFNI	CGCG	1 cut(s)	294
BspLI	GGNNCC	2 cut(s)	163, 407
BspMAI	CTGCAG	1 cut(s)	124
BspT107I	GGYRCC	1 cut(s)	161
BsrBI	CCGCTC	1 cut(s)	80
BsrDI	GCAATG	1 cut(s)	391
BsrI	ACTGG	2 cut(s)	15, 163
BssMI	GATC	1 cut(s)	380
Bst4CI	ACNGT	1 cut(s)	405
BstBAI	YACGTR	2 cut(s)	449, 455
BstC8I	GCNNGC	1 cut(s)	70
BstDEI	CTNAG	1 cut(s)	377
BstEII	GGTNACC	1 cut(s)	386
BstF5I	GGATG	2 cut(s)	134, 493
BstFNI	CGCG	1 cut(s)	294
BstHHI	GCGC	3 cut(s)	289, 296, 398
BstKTI	GATC	1 cut(s)	383
BstMAI	GTCTC	1 cut(s)	271
BstMBI	GATC	1 cut(s)	380
BstMWI	GCNNNNNNNGC	3 cut(s)	116, 131, 293
BstPI	GGTNACC	1 cut(s)	386
BstSFI	CTRYAG	2 cut(s)	120, 333
BstSLI	GKGCMC	2 cut(s)	448, 454
BstUI	CGCG	1 cut(s)	294
BstV1I	GCAGC	4 cut(s)	52, 106, 134, 283
BstXI	CCANNNNNNTGG	1 cut(s)	365
BsuRI	GGCC	1 cut(s)	23
BtsCI	GGATG	2 cut(s)	134, 493
BtsIMutI	CAGTG	1 cut(s)	8
Cac8I	GCNNGC	1 cut(s)	70
CfoI	GCGC	3 cut(s)	289, 296, 398
Cfr13I	GGNCC	2 cut(s)	22, 405
Csp6I	GTAC	1 cut(s)	251
CviAII	CATG	4 cut(s)	52, 263, 365, 506
CviJI	RGCY	4 cut(s)	23, 110, 125, 374
CviKI_1	RGCY	4 cut(s)	23, 110, 125, 374
CviQI	GTAC	1 cut(s)	251
DdeI	CTNAG	1 cut(s)	377
DpnI	GATC	1 cut(s)	382
DpnII	GATC	1 cut(s)	380
Eco47I	GGWCC	1 cut(s)	405
Eco72I	CACGTG	2 cut(s)	449, 455
Eco91I	GGTNACC	1 cut(s)	386
EcoO65I	GGTNACC	1 cut(s)	386
FaeI	CATG	4 cut(s)	55, 266, 368, 509
FaiI	YATR	8 cut(s)	40, 53, 227, 264, 326, 366, 507, 521
FalI	AAGNNNNNCTT	2 cut(s)	213, 245
FaqI	GGGAC	1 cut(s)	391
FatI	CATG	4 cut(s)	51, 262, 364, 505
FauI	CCCGC	1 cut(s)	139
Fnu4HI	GCNGC	5 cut(s)	66, 73, 120, 123, 297
FokI	GGATG	2 cut(s)	121, 500
Fsp4HI	GCNGC	5 cut(s)	66, 73, 120, 123, 297
FspAI	RTGCGCAY	1 cut(s)	288
FspBI	CTAG	2 cut(s)	278, 480
FspI	TGCGCA	1 cut(s)	288
GlaI	GCGC	3 cut(s)	288, 295, 397
GluI	GCNGC	5 cut(s)	66, 73, 120, 123, 297
HaeIII	GGCC	1 cut(s)	23
HhaI	GCGC	3 cut(s)	289, 296, 398
Hin1II	CATG	4 cut(s)	55, 266, 368, 509
Hin6I	GCGC	3 cut(s)	287, 294, 396
HinP1I	GCGC	3 cut(s)	287, 294, 396
HinfI	GANTC	3 cut(s)	432, 460, 528
HphI	GGTGA	1 cut(s)	380
Hpy166II	GTNNAC	2 cut(s)	446, 452
Hpy188I	TCNGA	3 cut(s)	92, 380, 527
Hpy188III	TCNNGA	3 cut(s)	203, 234, 353
Hpy8I	GTNNAC	2 cut(s)	446, 452
Hpy99I	CGWCG	1 cut(s)	96
HpyAV	CCTTC	3 cut(s)	8, 97, 425
HpyCH4III	ACNGT	1 cut(s)	405
HpyCH4IV	ACGT	3 cut(s)	94, 448, 454
HpyCH4V	TGCA	4 cut(s)	122, 440, 446, 452
HpyF10VI	GCNNNNNNNGC	3 cut(s)	116, 131, 293
HpyF3I	CTNAG	1 cut(s)	377
HpySE526I	ACGT	3 cut(s)	94, 448, 454
Hsp92II	CATG	4 cut(s)	55, 266, 368, 509
HspAI	GCGC	3 cut(s)	287, 294, 396
Kzo9I	GATC	1 cut(s)	380
LmnI	GCTCC	1 cut(s)	130
LpnPI	CCDG	4 cut(s)	82, 144, 216, 369
Lsp1109I	GCAGC	4 cut(s)	52, 106, 134, 283
LweI	GCATC	2 cut(s)	143, 274
MaeI	CTAG	2 cut(s)	278, 480
MaeII	ACGT	3 cut(s)	94, 448, 454
MaeIII	GTNAC	1 cut(s)	386
MalI	GATC	1 cut(s)	382
MbiI	CCGCTC	1 cut(s)	80
MboI	GATC	1 cut(s)	380
MboII	GAAGA	2 cut(s)	203, 293
MhlI	GDGCHC	2 cut(s)	448, 454
MluCI	AATT	3 cut(s)	29, 173, 535
MlyI	GAGTC	2 cut(s)	441, 469
MmeI	TCCRAC	1 cut(s)	115
MnlI	CCTC	1 cut(s)	478
MseI	TTAA	2 cut(s)	218, 534
MspA1I	CMGCKG	1 cut(s)	65
MvnI	CGCG	1 cut(s)	294
MwoI	GCNNNNNNNGC	3 cut(s)	116, 131, 293
NdeII	GATC	1 cut(s)	380
NlaIII	CATG	4 cut(s)	55, 266, 368, 509
NlaIV	GGNNCC	2 cut(s)	163, 407
NmuCI	GTSAC	1 cut(s)	386
NsbI	TGCGCA	1 cut(s)	288
PfeI	GAWTC	1 cut(s)	528
PflFI	GACNNNGTC	1 cut(s)	521
PkrI	GCNGC	5 cut(s)	67, 74, 121, 124, 298
PleI	GAGTC	2 cut(s)	440, 468
PmaCI	CACGTG	2 cut(s)	449, 455
PmlI	CACGTG	2 cut(s)	449, 455
PpsI	GAGTC	2 cut(s)	440, 468
Ppu21I	YACGTR	2 cut(s)	449, 455
PspCI	CACGTG	2 cut(s)	449, 455
PspEI	GGTNACC	1 cut(s)	386
PspN4I	GGNNCC	2 cut(s)	163, 407
PspPI	GGNCC	2 cut(s)	22, 405
PstI	CTGCAG	1 cut(s)	124
PsyI	GACNNNGTC	1 cut(s)	521
RsaI	GTAC	1 cut(s)	252
RsaNI	GTAC	1 cut(s)	251
SaqAI	TTAA	2 cut(s)	218, 534
SatI	GCNGC	5 cut(s)	66, 73, 120, 123, 297
Sau3AI	GATC	1 cut(s)	380
Sau96I	GGNCC	2 cut(s)	22, 405
SchI	GAGTC	2 cut(s)	441, 469
SduI	GDGCHC	2 cut(s)	448, 454
SetI	ASST	6 cut(s)	89, 97, 127, 388, 451, 457
SfaNI	GCATC	2 cut(s)	143, 274
SfcI	CTRYAG	2 cut(s)	120, 333
SinI	GGWCC	1 cut(s)	405
Sse9I	AATT	3 cut(s)	29, 173, 535
SsiI	CCGC	5 cut(s)	63, 73, 78, 132, 292
SspMI	CTAG	2 cut(s)	278, 480
TaaI	ACNGT	1 cut(s)	405
TaiI	ACGT	3 cut(s)	97, 451, 457
TaqI	TCGA	2 cut(s)	233, 421
TasI	AATT	3 cut(s)	29, 173, 535
TatI	WGTACW	1 cut(s)	250
TauI	GCSGC	1 cut(s)	75
TfiI	GAWTC	1 cut(s)	528
Tru1I	TTAA	2 cut(s)	218, 534
Tru9I	TTAA	2 cut(s)	218, 534
TscAI	CASTG	1 cut(s)	15
TseFI	GTSAC	1 cut(s)	386
TseI	GCWGC	4 cut(s)	65, 119, 122, 296
Tsp45I	GTSAC	1 cut(s)	386
TspDTI	ATGAA	4 cut(s)	33, 204, 248, 407
TspRI	CASTG	1 cut(s)	15
Tth111I	GACNNNGTC	1 cut(s)	521
VneI	GTGCAC	2 cut(s)	444, 450
VpaK11BI	GGWCC	1 cut(s)	405
XapI	RAATTY	1 cut(s)	173
XspI	CTAG	2 cut(s)	278, 480

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.