AT1G08600

SNF2 family N-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0010370
Physical Location & Seq
Forward (+)
2723677 .. 2733613
9937 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G08600.1

Sequence Viewer

Length: 4377 bp
ATGGAGGCAAACGAAGAAAGTTTGAAGGGAAAAATTGAAAAGCTAGAGGGAAAGGAGGTTATTGTGGAGTCAAAAGAGGATGAGATGGATATAATAATAGAAGAAAATAGGGAAGCAGAACAGGAGGTAATGGAGGTGAAAGCAAGAGATGGAAGAGGGGAGCAAAATGATGTACTGATGGAAGAAAACAACAATCAGGGTGAGCAAAAAGATGAGGAGATGCAAGATGCTTCTAGTAGATCTGAAAGTTCTGACTTCAATTCAGATGAAGATGAACAAATTCTGTCCCGGCGTGATGATGAGTTGGATCTTGAGAAACCTTTGAGCGAGGAAGAAATAGATGAGTTAATTTCAGATCTTCTGGCAGTTGAGAGCAAGGCTGCAGAAGCTCAAGAAGCACTCGAAAAGGAGTCTCTTTCTAAAGTAGAGAGTGAAGTTAGGGAGGAATTAGCACAAGCACTCCGTGGTGATGAGTTGGATGAAGCTGTTGCTGCTGAAATGATGACTTTTAAAGACGAATGGGAGGCAACTCTTGATGAGCTTGAAACAGAAAGTGCAACCTTGTTGGAGCAACTTGATGGTGCTGGAATCGAGCTTCCAAAATTGTACGAAATGATAGAAAGTCAAGCCCCTAATGGTTGCTACACTGAAGCTTGGAAGCAAAGAGCCCATTGGGTTGGTACTCAGGTGACAAAAGAAACTGTGGAATCATTGGCTAACGCTGAGAGGTTTCTGCACACTCATCGGCCTGTCCGAAAACGACATGGAAAACTTTTGGAGGAGGGAGCTAGTGGTTTTCTGGAGAAAAAACTCGCTGATGGTGCTGTTAAAGAATCTCTAGCTGGAACATCTGAGCTTGACTGGTCGTCTCTAAACAAAGTGTTTTCGGAAAAAAGGGATGAGTCTGTTTCCTTTGGTAGTAAGCAGTGGGCTTCTGTTTACTTGGCAAGCACTCCACACCAAGCTGCAGCCATGGGATTAGAATTTCCAGGAGTCAATGAGGTGGAGGAAATTGAAGAGATTGATGCAAGCTTAGCAGACCCATTTTTAGCTGATGCAATTGACAACGAAAGAGAACTTGCCCTTACTGAAGAACAAAAGACAAATTATATAAGGGTCAAAGAAGAGGATGATATAACTTGTGATCGTGTACTTCAACTTCGTTTGAAACGGAAAAGACGCAAGAAAAGATCTAAACAGGTTATTAGGTGTGCGGCAGAGAATATGGATGATGATTCTGTGTATTTGGATGGGAATAATACTACCCCAAATTTTGCCAAAGATCAAGTGAAAAGTCCGGAGACTAGCACTCAAGTTCATAATAGTGAAGTCAACATAGAGGAAAACGGGAATTTTTCTAATTCAGATGTAGATAAGATGACCCCCAGCACACATATTAATGTAGATGCCAAGAGAGATGATTCACAGAATCCAGCAAACAATTTTAGGTGTACTGCCTGTAATAAAGTAGCTGTGGAAGTGCATAGTCATCCCCTTTTAGAAGTAATAGTTTGCATGGATTGCAAACGTTCAATTGAAGATAGAGTTTCTAAGGTTGATGACTCTTTGGAACGTCATTGTGAATGGTGTGGTCATATTGCTGACTTAATAGATTGTAGGACATGCGAAAAACTTTTCTGTGCATCATGTATAAAGAGGAATATTGGTGAAGAATACATGTCTGAAGCTCAATCCTCTGGTTGGGATTGTTGTTGTTGCTCTCCAATTCCCTTGCAAAGATTGACACTGGAACTGGAGAAAGCTATGAGAGATAAAAAGTCAATAGAATTGAGCTCTGATTCGAGTTCTGATTCCAGCTCTGATAACAATTCTGTTGATACAGATGCTGATGTCAATGTAACAATCAGCTCAAAGAAGAAATCGAAAAAGAAAATTCGGCGGATAATCGATGACGCTGAACTAGGGAAAGATACGAGAACAAAGATTGCAATCGAAAAGGCACGACAGGAGCGCCTTAGGTCCTTGCAGTTTTCTGCCAGATACAAAACAATTAGCTCTATGGGAGACGTGAAATCTATTCCAGAAGGTGCGGAAGTTGAGGTTCTTGGTGATGCTCACAGTGGTTACATAGTGAATGTGGTTAGGGAGATTGGTGAAGAAGCTGTGAGGGTTCCTCGTAGCATATCTGCCAAACTAAAAGTCCATCAGGTAACAGGGATAAGATTTATGTGGGAAAATATTATTCAGTCTATCAGCAGAGTCAAGTCTGGTGATAAAGGTCTTGGTTGCATTCTAGCACATACAATGGGCCTGGGCAAAACTTTTCAGGTTATAGCATTCCTGTACACCGCAATGAGATGTGTTGATTTAGGGTTGAAAACTGCTCTTATTGTGACTCCTGTAAATGTGTTGCACAATTGGCGAAGTGAGTTTGAGAAGTGGATGCCTTCAGAAGTGAAACCGCTTCGCATTTTTATGCTTGGAGATGTTTCAAGGTATAAATTCTTCTATGAAAGAAACTTTTGGGGGGTGAAGGACTTAAATGCGGCCAGAGGGATCTGTAATGCCTTGAGGGATGGACCTGATATACTTGTTTGCGACGAGGCTCACATCATTAAGAACACCAAGGCTGACACAACGCAAGCATTGAAGCAAGTTAAATGCCAGAGAAGAATTGCCTTAACTGGCTCACCCCTTCAAAACAATCTCATGGAGTATTATTGTATGGTTGATTTTGTGAGAGAAGGATTCTTGGGAAGTAGCCCTGAGTTTAGAAACCGCTTCCAAAATCCAATAGAAAACGGACAGCATATGAATTCAACTGCGGAGGATGTAAAAATTATGAACCAGAGGTCACACATTCTGTATGAGCAATTGAAAGGTTTTGTGCAAAGAATGGATATGAATGTGGTGAAAAAGGATCTGCCACCTAAAACAGTCTTCGTAATATCTGTCAAGCTATCTCCCTTGCAACGGATATTGTATCAGAGATTTCTTGAGCTTTATGGGTTCAGCGATGGAAGAACAGATGAAAGGATGAGAAAAAACTTTTTTGCTGCTTACCAGGTCTTGGCTCAGATTTTGAATCATCCAGGGATTCCGCAATTAAGAAGTGAAGATAGCAAGAATGGTCGTCGTGGTAGCATTGTTGATATTCCAGATGACTGTTCAAGTGATGAAAATATAGACTACAACATGGTTACAGGAGAGAAACAGAGAACTATGAATGATCTGCAGGATAAAGTTGATGGATACCTCCAGAAGGATTGGTGGGTCGACCTACTTCAAAAAAATAATTATAAGGTGTCGGACTTCAGTGGCAAAATGATTCTGCTATTGGATATTTTATCTATGAGTGCTGATGTGGGGGATAAGGCGCTTGTGTTTAGCCAGAGTATCCCGACATTGGATCTCATAGAACTTTATCTTTCAAGAGTACCTCGGCATGGGAAACAAGGAAAGTTCTGGAAAAAGGGGAAAGACTGGTATAGAATTGATGGAAAAACTGAAAGCTCAGAACGCCAGAAGTTGGTTGATAGGTTTAATGAGCCTGACAACAAAAGAGTGAAATGTACACTAATTTCAACCAGAGCGGGATCCCTTGGAATTAACCTTTATGCTGCTAACCGTGTGATCATCGTCGATGGTTCATGGAATCCAACCTATGATCTTCAAGCTATATTTCGAGCTTGGAGGTATGGCCAAAAGAAGCCCGTATTTGCGTACAGATTGATGGCACGTGGGACTATTGAAGAAAAAATATATAAACGTCAGGTAACCAAGGAAGGGCTAGCTGCGAGAGTAGTGGATAGACAACAAGTGCACAGGACTATCTCCAAAGAAGAGATGTTACATCTTTTTGAATTTGACGATGATGATGAAAAATCTGAAGCCGTAACTGAGATAAGCAAGCAAAATGAAGCGGGACATAGCAATCTGGTGGAGCAAGCAATCTTGTGGACAAAGAAGGCCACTTTATCTCGTGTTGGTGGCGACAAATTGATGGAGAACTTACTACAGAGACACGGCCCCAACTGGATTTCCAGTTTCCATGAGCACGAGACATTGCTACAAGAGAATGAAGAAGAAAGACTGACAAAGGAAGAAAAAGACATGGCCTGGGAAGTTTATAGGAGAGCACTTGAGTGGGAGGAAGTTCAACGGGTCCCATTCAGTGAATCTCCAGTGGTTCCAAAACCTTCTCCTTCCACACAAACAGAGCCCTTGCCCCAGCCAAAGGGGTTCAACAGGAGTCGTTTTGTAAACCGCAACTGCACTAGAATCGCGCACCAGCTTACACTCATAAGCCAAGGATTAAAAGTCGGCAGCAGCACAGTCTGTGGGGAGTGTGGGCGCGTCATAAGGTGGGAAGATGTTATACCCGCATCCAAACTTTCAGCGGTAATTGTAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000775 GO:0000785 GO:0000792 GO:0000902 GO:0000904 GO:0001674 GO:0001932 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005700 GO:0005701 GO:0005721 GO:0005722 GO:0006139 GO:0006259 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006336 GO:0006342 GO:0006355 GO:0006725 GO:0006807 GO:0006915 GO:0006928 GO:0006935 GO:0006996 GO:0007154 GO:0007165 GO:0007275 GO:0007399 GO:0007409 GO:0007411 GO:0008150 GO:0008152 GO:0008219 GO:0008347 GO:0009555 GO:0009605 GO:0009653 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0009987 GO:0010369 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010646 GO:0012501 GO:0016043 GO:0016458 GO:0016462 GO:0016477 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019220 GO:0019222 GO:0022008 GO:0022607 GO:0023051 GO:0023052 GO:0030030 GO:0030154 GO:0030182 GO:0031175 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031399 GO:0031497 GO:0032268 GO:0032501 GO:0032502 GO:0032872 GO:0032989 GO:0032990 GO:0033043 GO:0033044 GO:0034401 GO:0034622 GO:0034641 GO:0034724 GO:0034728 GO:0035556 GO:0040011 GO:0040029 GO:0042063 GO:0042221 GO:0042325 GO:0042330 GO:0042393 GO:0042585 GO:0043007 GO:0043073 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043408 GO:0043570 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0046328 GO:0046483 GO:0048229 GO:0048468 GO:0048519 GO:0048523 GO:0048583 GO:0048666 GO:0048667 GO:0048699 GO:0048731 GO:0048812 GO:0048856 GO:0048858 GO:0048869 GO:0048870 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051172 GO:0051174 GO:0051179 GO:0051246 GO:0051252 GO:0051253 GO:0051276 GO:0051674 GO:0051716 GO:0060255 GO:0061564 GO:0065003 GO:0065004 GO:0065007 GO:0070302 GO:0070828 GO:0070868 GO:0071103 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0097190 GO:0097193 GO:0097485 GO:0097549 GO:0098687 GO:0120036 GO:0120039 GO:1900049 GO:1901360 GO:1902275 GO:1902531 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Helicase_C SNF2_N

Protein Analysis

1458

Amino Acids

165.91

Weight (kDa)

5.27

Isoelectric Point (pI)

46.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SNF2-rel_dom PF00176 722 - 1019 2.1e-46 SNF2-related domain
Helicase_C PF00271 1095 - 1221 3.1e-18 Helicase conserved C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010370)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08600 AT1G08600 AT1G08600 AT1G08600
fragaria_vesca FvH4_6g01581
malus_domestica MD00G1149200.v1.1 MD04G1232200.v1.1
prunus_persica Prupe.6G351600_v2.0.a1 Prupe.6G351600_v2.0.a1
pyrus_communis pycom04g20560 pycom12g22990
rosa_chinensis RchiOBHm_Chr3g0449401
rosa_laevigata RLG00000025834
rosa_multiflora Rmu_ssc0000423.1_g000001
rosa_roxburghii Rroxscaffold_6G00427360
rosa_rugosa Rorug02G0620400
rosa_samantha Rh3AG018100 Rh3BG018400 Rh3CG017300 Rh3DG018800
rosa_wichuraiana Rw3G001450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 3261
AccB7I CCANNNNNTGG 2 cut(s) 3031, 3490
AccBSI CCGCTC 1 cut(s) 3554
AccI GTMKAC 1 cut(s) 3237
AccII CGCG 2 cut(s) 4247, 4317
AccIII TCCGGA 1 cut(s) 1297
AclI AACGTT 1 cut(s) 1528
AclWI GGATC 6 cut(s) 315, 2525, 2889, 3378, 3552, 3565
AcoI YGGCCR 2 cut(s) 2508, 3661
AcsI RAATTY 8 cut(s) 279, 983, 1270, 1351, 1893, 2462, 2776, 3824
AcuI CTGAAG 6 cut(s) 669, 1110, 1704, 2394, 3259, 3870
AcvI CACGTG 1 cut(s) 3701
AdeI CACNNNGTG 1 cut(s) 464
AfaI GTAC 9 cut(s) 174, 608, 682, 1152, 1453, 2306, 3399, 3535, 3686
AfiI CCNNNNNNNGG 9 cut(s) 1701, 2934, 3031, 3223, 3367, 3407, 3490, 3747, 4198
AflIII ACRYGT 1 cut(s) 1677
AhdI GACNNNNNGTC 1 cut(s) 865
AjiI CACGTC 1 cut(s) 2029
AjnI CCWGG 5 cut(s) 988, 2271, 3024, 3052, 4079
AleI CACNNNNGTG 1 cut(s) 4105
Alw21I GWGCWC 4 cut(s) 1796, 3786, 4020, 4102
Alw26I GTCTC 6 cut(s) 417, 873, 1295, 2019, 3976, 4016
Alw44I GTGCAC 1 cut(s) 3782
AlwI GGATC 6 cut(s) 315, 2525, 2889, 3378, 3552, 3565
AlwNI CAGNNNCTG 1 cut(s) 1847
Aor13HI TCCGGA 1 cut(s) 1297
AoxI GGCC 7 cut(s) 746, 2269, 2508, 3661, 3930, 3988, 4077
ApaLI GTGCAC 1 cut(s) 3782
ApeKI GCWGC 9 cut(s) 380, 491, 965, 968, 3017, 3581, 3755, 4287, 4290
ApoI RAATTY 8 cut(s) 279, 983, 1270, 1351, 1893, 2462, 2776, 3824
ArsI GACNNNNNNTTYG 2 cut(s) 2145, 2177
AseI ATTAAT 1 cut(s) 1398
Asp700I GAANNNNTTC 1 cut(s) 279
AspLEI GCGC 4 cut(s) 1974, 3340, 4249, 4317
AspS9I GGNCC 5 cut(s) 1980, 2269, 2540, 3989, 4126
AsuC2I CCSGG 1 cut(s) 289
AsuNHI GCTAGC 1 cut(s) 3751
AvaII GGWCC 3 cut(s) 1980, 2540, 4126
AxyI CCTNAGG 1 cut(s) 1976
BaeGI GKGCMC 1 cut(s) 3786
BaeI ACNNNNGTAYC 2 cut(s) 672, 705
BalI TGGCCA 1 cut(s) 3663
BamHI GGATCC 1 cut(s) 3557
BanII GRGCYC 3 cut(s) 670, 1796, 4185
BarI GAAGNNNNNNTAC 8 cut(s) 1143, 1175, 2450, 2482, 3795, 3827, 4323, 4355
BauI CACGAG 2 cut(s) 3942, 4019
BbrPI CACGTG 1 cut(s) 3701
BbsI GAAGAC 1 cut(s) 2893
Bbv12I GWGCWC 4 cut(s) 1796, 3786, 4020, 4102
BbvI GCAGC 9 cut(s) 367, 478, 952, 980, 3004, 3568, 3742, 4299, 4302
BceAI ACGGC 2 cut(s) 3839, 4003
BcgI CGANNNNNNTGC 4 cut(s) 725, 759, 4225, 4259
BciT130I CCWGG 5 cut(s) 990, 2273, 3026, 3054, 4081
BciVI GTATCC 2 cut(s) 3206, 3368
BclI TGATCA 1 cut(s) 3594
BcnI CCSGG 1 cut(s) 289
BcoDI GTCTC 6 cut(s) 417, 873, 1295, 2019, 3976, 4016
BfaI CTAG 9 cut(s) 44, 234, 789, 839, 1305, 1922, 2255, 3752, 4239
BfmI CTRYAG 4 cut(s) 381, 966, 3194, 3977
BfoI RGCGCY 2 cut(s) 1975, 3341
BfuI GTATCC 2 cut(s) 3206, 3368
BglII AGATCT 3 cut(s) 239, 355, 1190
BlpI GCTNAGC 1 cut(s) 1033
Bme1390I CCNGG 6 cut(s) 289, 990, 2273, 3026, 3054, 4081
Bme18I GGWCC 3 cut(s) 1980, 2540, 4126
BmeRI GACNNNNNGTC 1 cut(s) 865
BmgBI CACGTC 1 cut(s) 2029
BmgT120I GGNCC 5 cut(s) 1980, 2269, 2540, 3989, 4126
BmiI GGNNCC 6 cut(s) 2133, 3559, 3991, 4127, 4128, 4152
BmrFI CCNGG 6 cut(s) 289, 990, 2273, 3026, 3054, 4081
BmtI GCTAGC 1 cut(s) 3755
BpiI GAAGAC 1 cut(s) 2893
BplI GAGNNNNNCTC 2 cut(s) 2119, 2151
BpmI CTGGAG 4 cut(s) 821, 1775, 3203, 4128
Bpu1102I GCTNAGC 1 cut(s) 1033
BpuEI CTTGAG 6 cut(s) 332, 375, 1296, 2551, 2978, 4124
BpuMI CCSGG 1 cut(s) 289
Bsa29I ATCGAT 1 cut(s) 1908
BsaAI YACGTR 1 cut(s) 3701
BsaBI GATNNNNATC 1 cut(s) 1949
BsaWI WCCGGW 1 cut(s) 1297
BsaXI ACNNNNNCTCC 2 cut(s) 444, 474
Bsc4I CCNNNNNNNGG 9 cut(s) 1701, 2934, 3031, 3223, 3367, 3407, 3490, 3747, 4198
Bse1I ACTGG 8 cut(s) 866, 1752, 1758, 2650, 3449, 4001, 4005, 4145
Bse21I CCTNAGG 1 cut(s) 1976
Bse3DI GCAATG 2 cut(s) 2319, 4025
Bse8I GATNNNNATC 1 cut(s) 1949
BseAI TCCGGA 1 cut(s) 1297
BseBI CCWGG 5 cut(s) 990, 2273, 3026, 3054, 4081
BseCI ATCGAT 1 cut(s) 1908
BseJI GATNNNNATC 1 cut(s) 1949
BseLI CCNNNNNNNGG 9 cut(s) 1701, 2934, 3031, 3223, 3367, 3407, 3490, 3747, 4198
BseMI GCAATG 2 cut(s) 2319, 4025
BseMII CTCAG 7 cut(s) 698, 714, 843, 2718, 3050, 3489, 3852
BseNI ACTGG 8 cut(s) 866, 1752, 1758, 2650, 3449, 4001, 4005, 4145
BseRI GAGGAG 2 cut(s) 230, 794
BseSI GKGCMC 1 cut(s) 3786
BseXI GCAGC 9 cut(s) 367, 478, 952, 980, 3004, 3568, 3742, 4299, 4302
BseYI CCCAGC 2 cut(s) 1385, 4191
BsgI GTGCAG 2 cut(s) 719, 4219
Bsh1236I CGCG 2 cut(s) 4247, 4317
BshFI GGCC 7 cut(s) 748, 2271, 2510, 3663, 3932, 3990, 4079
BshVI ATCGAT 1 cut(s) 1908
BsiHKAI GWGCWC 4 cut(s) 1796, 3786, 4020, 4102
BsiSI CCGG 2 cut(s) 289, 1298
BslFI GGGAC 4 cut(s) 271, 3718, 3900, 4112
BslI CCNNNNNNNGG 9 cut(s) 1701, 2934, 3031, 3223, 3367, 3407, 3490, 3747, 4198
BsmAI GTCTC 6 cut(s) 417, 873, 1295, 2019, 3976, 4016
BsmBI CGTCTC 2 cut(s) 873, 2019
BsmFI GGGAC 4 cut(s) 271, 3718, 3900, 4112
BsmI GAATGC 2 cut(s) 2250, 2297
BsnI GGCC 7 cut(s) 748, 2271, 2510, 3663, 3932, 3990, 4079
Bsp1286I GDGCHC 6 cut(s) 670, 1796, 3786, 4020, 4102, 4185
Bsp13I TCCGGA 1 cut(s) 1297
Bsp1407I TGTACA 2 cut(s) 2304, 3533
Bsp1720I GCTNAGC 1 cut(s) 1033
Bsp19I CCATGG 1 cut(s) 972
BspANI GGCC 7 cut(s) 748, 2271, 2510, 3663, 3932, 3990, 4079
BspCNI CTCAG 7 cut(s) 697, 715, 844, 2719, 3049, 3488, 3853
BspDI ATCGAT 1 cut(s) 1908
BspEI TCCGGA 1 cut(s) 1297
BspFNI CGCG 2 cut(s) 4247, 4317
BspLI GGNNCC 6 cut(s) 2133, 3559, 3991, 4127, 4128, 4152
BspMAI CTGCAG 3 cut(s) 385, 970, 3198
BspOI GCTAGC 1 cut(s) 3755
BspPI GGATC 6 cut(s) 315, 2525, 2889, 3378, 3552, 3565
BsrBI CCGCTC 1 cut(s) 3554
BsrDI GCAATG 2 cut(s) 2319, 4025
BsrGI TGTACA 2 cut(s) 2304, 3533
BsrI ACTGG 8 cut(s) 866, 1752, 1758, 2650, 3449, 4001, 4005, 4145
BssSI CACGAG 2 cut(s) 3942, 4019
BssT1I CCWWGG 5 cut(s) 972, 2586, 3562, 3741, 4270
Bst2BI CACGAG 2 cut(s) 3942, 4019
Bst2UI CCWGG 5 cut(s) 990, 2273, 3026, 3054, 4081
Bst4CI ACNGT 6 cut(s) 703, 2081, 2899, 3128, 3590, 4297
Bst6I CTCTTC 4 cut(s) 148, 1011, 1119, 3798
BstAPI GCANNNNNTGC 1 cut(s) 1521
BstAUI TGTACA 2 cut(s) 2304, 3533
BstBAI YACGTR 1 cut(s) 3701
BstC8I GCNNGC 6 cut(s) 949, 1030, 2604, 3753, 3872, 3909
BstDSI CCRYGG 2 cut(s) 463, 972
BstEII GGTNACC 1 cut(s) 3736
BstENI CCTNNNNNAGG 1 cut(s) 3221
BstFNI CGCG 2 cut(s) 4247, 4317
BstH2I RGCGCY 2 cut(s) 1975, 3341
BstHHI GCGC 4 cut(s) 1974, 3340, 4249, 4317
BstMAI GTCTC 6 cut(s) 417, 873, 1295, 2019, 3976, 4016
BstMWI GCNNNNNNNGC 8 cut(s) 386, 395, 491, 821, 1034, 1521, 2380, 3480
BstNI CCWGG 5 cut(s) 990, 2273, 3026, 3054, 4081
BstNSI RCATGY 2 cut(s) 1626, 1681
BstPI GGTNACC 1 cut(s) 3736
BstSCI CCNGG 6 cut(s) 287, 988, 2271, 3024, 3052, 4079
BstSFI CTRYAG 4 cut(s) 381, 966, 3194, 3977
BstSLI GKGCMC 1 cut(s) 3786
BstUI CGCG 2 cut(s) 4247, 4317
BstV1I GCAGC 9 cut(s) 367, 478, 952, 980, 3004, 3568, 3742, 4299, 4302
BstV2I GAAGAC 1 cut(s) 2893
BstX2I RGATCY 8 cut(s) 239, 307, 355, 1190, 2517, 2881, 3370, 3557
BstXI CCANNNNNNTGG 1 cut(s) 677
BstYI RGATCY 8 cut(s) 239, 307, 355, 1190, 2517, 2881, 3370, 3557
Bsu15I ATCGAT 1 cut(s) 1908
Bsu36I CCTNAGG 1 cut(s) 1976
BsuI GTATCC 2 cut(s) 3206, 3368
BsuRI GGCC 7 cut(s) 748, 2271, 2510, 3663, 3932, 3990, 4079
BsuTUI ATCGAT 1 cut(s) 1908
BtgI CCRYGG 2 cut(s) 463, 972
BtgZI GCGATG 1 cut(s) 2991
BtrI CACGTC 1 cut(s) 2029
BtsI GCAGTG 1 cut(s) 932
BtsIMutI CAGTG 7 cut(s) 645, 932, 1745, 2086, 3283, 4141, 4152
Cac8I GCNNGC 6 cut(s) 949, 1030, 2604, 3753, 3872, 3909
CaiI CAGNNNCTG 1 cut(s) 1847
CfoI GCGC 4 cut(s) 1974, 3340, 4249, 4317
Cfr13I GGNCC 5 cut(s) 1980, 2269, 2540, 3989, 4126
ClaI ATCGAT 1 cut(s) 1908
CseI GACGC 3 cut(s) 1188, 1922, 4306
CsiI ACCWGGT 1 cut(s) 3024
Csp6I GTAC 9 cut(s) 173, 607, 681, 1151, 1452, 2305, 3398, 3534, 3685
CviQI GTAC 9 cut(s) 173, 607, 681, 1151, 1452, 2305, 3398, 3534, 3685
DraI TTTAAA 1 cut(s) 511
DraIII CACNNNGTG 1 cut(s) 464
DriI GACNNNNNGTC 1 cut(s) 865
EaeI YGGCCR 2 cut(s) 2508, 3661
Eam1104I CTCTTC 4 cut(s) 148, 1011, 1119, 3798
Eam1105I GACNNNNNGTC 1 cut(s) 865
EarI CTCTTC 4 cut(s) 148, 1011, 1119, 3798
EciI GGCGGA 1 cut(s) 1915
Ecl136II GAGCTC 1 cut(s) 1794
Eco130I CCWWGG 5 cut(s) 972, 2586, 3562, 3741, 4270
Eco24I GRGCYC 3 cut(s) 670, 1796, 4185
Eco47I GGWCC 3 cut(s) 1980, 2540, 4126
Eco53kI GAGCTC 1 cut(s) 1794
Eco57I CTGAAG 6 cut(s) 669, 1110, 1704, 2394, 3259, 3870
Eco72I CACGTG 1 cut(s) 3701
Eco81I CCTNAGG 1 cut(s) 1976
Eco91I GGTNACC 1 cut(s) 3736
EcoICRI GAGCTC 1 cut(s) 1794
EcoNI CCTNNNNNAGG 1 cut(s) 3221
EcoO109I RGGNCCY 2 cut(s) 1980, 4126
EcoO65I GGTNACC 1 cut(s) 3736
EcoRI GAATTC 1 cut(s) 2776
EcoRII CCWGG 5 cut(s) 988, 2271, 3024, 3052, 4079
EcoT14I CCWWGG 5 cut(s) 972, 2586, 3562, 3741, 4270
EcoT38I GRGCYC 3 cut(s) 670, 1796, 4185
ErhI CCWWGG 5 cut(s) 972, 2586, 3562, 3741, 4270
Esp3I CGTCTC 2 cut(s) 873, 2019
FaqI GGGAC 4 cut(s) 271, 3718, 3900, 4112
FauI CCCGC 3 cut(s) 3547, 3877, 4351
FauNDI CATATG 1 cut(s) 2772
FbaI TGATCA 1 cut(s) 3594
FblI GTMKAC 1 cut(s) 3237
FriOI GRGCYC 3 cut(s) 670, 1796, 4185
FspBI CTAG 9 cut(s) 44, 234, 789, 839, 1305, 1922, 2255, 3752, 4239
GlaI GCGC 4 cut(s) 1973, 3339, 4248, 4316
GsaI CCCAGC 2 cut(s) 1389, 4195
GsuI CTGGAG 4 cut(s) 821, 1775, 3203, 4128
HaeII RGCGCY 2 cut(s) 1975, 3341
HaeIII GGCC 7 cut(s) 748, 2271, 2510, 3663, 3932, 3990, 4079
HapII CCGG 2 cut(s) 289, 1298
HgaI GACGC 3 cut(s) 1188, 1922, 4306
HhaI GCGC 4 cut(s) 1974, 3340, 4249, 4317
Hin6I GCGC 4 cut(s) 1972, 3338, 4247, 4315
HinP1I GCGC 4 cut(s) 1972, 3338, 4247, 4315
HincII GTYRAC 2 cut(s) 1333, 3238
HindII GTYRAC 2 cut(s) 1333, 3238
HindIII AAGCTT 2 cut(s) 651, 1030
HpaII CCGG 2 cut(s) 289, 1298
Hpy99I CGWCG 3 cut(s) 2564, 3099, 3605
HpyCH4III ACNGT 6 cut(s) 703, 2081, 2899, 3128, 3590, 4297
HpyCH4IV ACGT 5 cut(s) 1528, 1573, 2028, 3700, 3730
HpyF10VI GCNNNNNNNGC 8 cut(s) 386, 395, 491, 821, 1034, 1521, 2380, 3480
HpySE526I ACGT 5 cut(s) 1528, 1573, 2028, 3700, 3730
HspAI GCGC 4 cut(s) 1972, 3338, 4247, 4315
KflI GGGWCCC 1 cut(s) 4126
Kpn2I TCCGGA 1 cut(s) 1297
Ksp22I TGATCA 1 cut(s) 3594
LmnI GCTCC 5 cut(s) 160, 568, 785, 1969, 3904
Lsp1109I GCAGC 9 cut(s) 367, 478, 952, 980, 3004, 3568, 3742, 4299, 4302
MabI ACCWGGT 1 cut(s) 3024
MaeI CTAG 9 cut(s) 44, 234, 789, 839, 1305, 1922, 2255, 3752, 4239
MaeII ACGT 5 cut(s) 1528, 1573, 2028, 3700, 3730
MbiI CCGCTC 1 cut(s) 3554
MfeI CAATTG 4 cut(s) 1059, 1533, 2377, 2834
MflI RGATCY 8 cut(s) 239, 307, 355, 1190, 2517, 2881, 3370, 3557
MhlI GDGCHC 6 cut(s) 670, 1796, 3786, 4020, 4102, 4185
MlsI TGGCCA 1 cut(s) 3663
MluNI TGGCCA 1 cut(s) 3663
MlyI GAGTC 8 cut(s) 77, 419, 911, 1002, 1556, 2229, 2350, 4222
MmeI TCCRAC 5 cut(s) 285, 456, 546, 3249, 3644
Mox20I TGGCCA 1 cut(s) 3663
MroI TCCGGA 1 cut(s) 1297
MroXI GAANNNNTTC 1 cut(s) 279
MscI TGGCCA 1 cut(s) 3663
MslI CAYNNNNRTG 5 cut(s) 1323, 1398, 2312, 2435, 4105
Msp20I TGGCCA 1 cut(s) 3663
MspA1I CMGCKG 1 cut(s) 4361
MspI CCGG 2 cut(s) 289, 1298
MspR9I CCNGG 6 cut(s) 289, 990, 2273, 3026, 3054, 4081
MunI CAATTG 4 cut(s) 1059, 1533, 2377, 2834
Mva1269I GAATGC 2 cut(s) 2250, 2297
MvaI CCWGG 5 cut(s) 990, 2273, 3026, 3054, 4081
MvnI CGCG 2 cut(s) 4247, 4317
MwoI GCNNNNNNNGC 8 cut(s) 386, 395, 491, 821, 1034, 1521, 2380, 3480
NciI CCSGG 1 cut(s) 289
NcoI CCATGG 1 cut(s) 972
NdeI CATATG 1 cut(s) 2772
NheI GCTAGC 1 cut(s) 3751
NlaIV GGNNCC 6 cut(s) 2133, 3559, 3991, 4127, 4128, 4152
NmeAIII GCCGAG 1 cut(s) 3382
NmuCI GTSAC 3 cut(s) 688, 2353, 2814
NspI RCATGY 2 cut(s) 1626, 1681
OliI CACNNNNGTG 1 cut(s) 4105
PciI ACATGT 1 cut(s) 1677
PcsI WCGNNNNNNNCGW 1 cut(s) 751
PctI GAATGC 2 cut(s) 2250, 2297
PdmI GAANNNNTTC 1 cut(s) 279
PflMI CCANNNNNTGG 2 cut(s) 3031, 3490
PfoI TCCNGGA 1 cut(s) 988
PleI GAGTC 8 cut(s) 76, 418, 910, 1001, 1556, 2228, 2350, 4221
PmaCI CACGTG 1 cut(s) 3701
PmlI CACGTG 1 cut(s) 3701
PpsI GAGTC 8 cut(s) 76, 418, 910, 1001, 1556, 2228, 2350, 4221
Ppu21I YACGTR 1 cut(s) 3701
PpuMI RGGWCCY 2 cut(s) 1980, 4126
PscI ACATGT 1 cut(s) 1677
PshBI ATTAAT 1 cut(s) 1398
PsiI TTATAA 1 cut(s) 3261
Psp124BI GAGCTC 1 cut(s) 1796
Psp1406I AACGTT 1 cut(s) 1528
Psp5II RGGWCCY 2 cut(s) 1980, 4126
Psp6I CCWGG 5 cut(s) 988, 2271, 3024, 3052, 4079
PspCI CACGTG 1 cut(s) 3701
PspEI GGTNACC 1 cut(s) 3736
PspFI CCCAGC 2 cut(s) 1385, 4191
PspGI CCWGG 5 cut(s) 988, 2271, 3024, 3052, 4079
PspN4I GGNNCC 6 cut(s) 2133, 3559, 3991, 4127, 4128, 4152
PspPI GGNCC 5 cut(s) 1980, 2269, 2540, 3989, 4126
PspPPI RGGWCCY 2 cut(s) 1980, 4126
PstI CTGCAG 3 cut(s) 385, 970, 3198
PstNI CAGNNNCTG 1 cut(s) 1847
PsuI RGATCY 8 cut(s) 239, 307, 355, 1190, 2517, 2881, 3370, 3557
RsaI GTAC 9 cut(s) 174, 608, 682, 1152, 1453, 2306, 3399, 3535, 3686
RsaNI GTAC 9 cut(s) 173, 607, 681, 1151, 1452, 2305, 3398, 3534, 3685
RseI CAYNNNNRTG 5 cut(s) 1323, 1398, 2312, 2435, 4105
SacI GAGCTC 1 cut(s) 1796
SalI GTCGAC 1 cut(s) 3236
Sau96I GGNCC 5 cut(s) 1980, 2269, 2540, 3989, 4126
SchI GAGTC 8 cut(s) 77, 419, 911, 1002, 1556, 2229, 2350, 4222
ScrFI CCNGG 6 cut(s) 289, 990, 2273, 3026, 3054, 4081
SduI GDGCHC 6 cut(s) 670, 1796, 3786, 4020, 4102, 4185
SexAI ACCWGGT 1 cut(s) 3024
SfcI CTRYAG 4 cut(s) 381, 966, 3194, 3977
SinI GGWCC 3 cut(s) 1980, 2540, 4126
SmiMI CAYNNNNRTG 5 cut(s) 1323, 1398, 2312, 2435, 4105
SmlI CTYRAG 6 cut(s) 311, 390, 1311, 2530, 2957, 4103
SmoI CTYRAG 6 cut(s) 311, 390, 1311, 2530, 2957, 4103
SspI AATATT 2 cut(s) 1663, 2200
SspMI CTAG 9 cut(s) 44, 234, 789, 839, 1305, 1922, 2255, 3752, 4239
SstI GAGCTC 1 cut(s) 1796
StyD4I CCNGG 6 cut(s) 287, 988, 2271, 3024, 3052, 4079
StyI CCWWGG 5 cut(s) 972, 2586, 3562, 3741, 4270
TaaI ACNGT 6 cut(s) 703, 2081, 2899, 3128, 3590, 4297
TaiI ACGT 5 cut(s) 1531, 1576, 2031, 3703, 3733
TaqI TCGA 9 cut(s) 402, 591, 1802, 1883, 1908, 1953, 3237, 3603, 3646
TatI WGTACW 5 cut(s) 172, 1150, 1451, 2304, 3533
TauI GCSGC 2 cut(s) 1217, 2510
TscAI CASTG 7 cut(s) 652, 932, 1752, 2086, 3283, 4141, 4152
TseFI GTSAC 3 cut(s) 688, 2353, 2814
TseI GCWGC 9 cut(s) 380, 491, 965, 968, 3017, 3581, 3755, 4287, 4290
Tsp45I GTSAC 3 cut(s) 688, 2353, 2814
TspGWI ACGGA 4 cut(s) 452, 1186, 2778, 2950
TspRI CASTG 7 cut(s) 652, 932, 1752, 2086, 3283, 4141, 4152
Van91I CCANNNNNTGG 2 cut(s) 3031, 3490
VneI GTGCAC 1 cut(s) 3782
VpaK11BI GGWCC 3 cut(s) 1980, 2540, 4126
VspI ATTAAT 1 cut(s) 1398
XagI CCTNNNNNAGG 1 cut(s) 3221
XapI RAATTY 8 cut(s) 279, 983, 1270, 1351, 1893, 2462, 2776, 3824
XceI RCATGY 2 cut(s) 1626, 1681
XmiI GTMKAC 1 cut(s) 3237
XmnI GAANNNNTTC 1 cut(s) 279
XspI CTAG 9 cut(s) 44, 234, 789, 839, 1305, 1922, 2255, 3752, 4239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.