Rroxscaffold_6G00427360

Transcriptional regulator

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Reverse (-)
47993272 .. 48007145
13874 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00427360.1

Sequence Viewer

Length: 4356 bp
ATGGAAGAAAGCCGTGACGTGGTGGAAGATGTGGAGAGTGGTGGTTCTAGTGGTAGTGATTTGGATTCTTTTATAGATGATTCAGAAGTTGATGAAGAACCTTTATCTGATAAAGACATTGAGGAGCTGATTGCTGAATTTTTGGAGGTTGAGAGTAAGGCTGCAGAGGCTCAGGAAGCGCTTGAAAAGGAGTCTCTTGCCAAAGTGGAGACTGAAGTTAGAGAGGAGCTGGCACAAACTCTTCACGGGAATGATTTGGAAACAGCTGTTGCAGATGAAATGGCTACTTTAATAGAAGACTGGAAAGCTGAGCTCGATGAGCTTGAGACTGAGAGTGCTCATTTGTTGGAACAACTTGATGGGGCAGGCATTGAGCTACCAAGCCTTTATAAGTGGATTGAAAGTCAGGCTCCTAATGGTTGCTGCACTGAAGCTTGGAAAACACGAATACACTGGGTAGGAAGTCAGGTGAGTGGAGAATTTACCGAGTCAAGAGCTGATGCTGAGAAGTATCTTCAAATGCACAGACCTGTAAGAAGGAAACATGGTAAACTATTGGAGGATGGTGCTAGTGGATTCCTGCAGAAAAAACTAGCTGAAGAGGGGAGCAAGGATGTTGCGACAACCGAGGTTGATTGGTGTTCTCTCAACAAATTATTTTCTGACGGTGCAACTAAGGATAGCGCTTCATTTGGAAGCAAGCACTGGGCTTCTGTTTACTTGGCTAGCACACCGCACCAAGCTGCTGAGATGGGACTTGAATTCCCTGGAGTCAATGAGGTGACTAATATTTCTGTTTACCTATTCTATGGAATTCCTGTATACTACCCTCTTGTCACAAGATGTGTGGAGGAGATTGATGACATTGATGGCAATTCTAGTGATCCATTTGTTGCAGCTGCTGTTGCAAATGAAAGAGAACTGAATCTCTCAGAAGAACAGAAAAGAAGTTATAGGAAGGTTAAGGAAGAAGATGACGCAAACATTGATAGGAAGCTTCAAGTTCATTTGAAACGGAGGAGACATCAAAGGAGATGTAAACAGGATGTCAGTCAGAAAGAAGTTTTTCCAATTGATCAAGTGATAGAAAGCAACATGGGCCAGTCTTTCTCAATGCCTGACTCTTCTACTGGTATCTCAAATGGGAAAATTGATGAAGATGGTGAAAACATTTGTAACACAGATTATGAGGTTGAAGGCCAAAATTTGAAGTCTGCCATAATGAGTAACGGTGCTCCACCGGCCCCTGATTCCACTGAAGCCAGAGGGTCCAAGCGTCTCAATGAGAGCGAGGAACTAAACATTAACATTAAGAGGAGTCGAACTATAGTTATAGACAGTGATGATGAAGCTTCAATGAAAGATACTTTTGACGGCAACATGATAAAATCTGAGGATCATTCCTATGTGAAAGAGAATATCTGCATATCTGGAGATGATGGTCTCACATCACATAGTCTGAATAAGATGCTCCATTGCACAGCTTGTAATAAATTTTCTGCTGAAGTGCGCTCACATCCACTTATGGAAGTGATTATTTGTGCAAATTGCAAGTGCTTATTGGAAGAAAAGATGCATTTCAAGAGGAATATTGGAGAGGAATGCTTATCCAAGGCCCAGACTGATGGCTGGCAGTGTTGTTCCTGTTGCCCAAGTCTCCTACAGACATTGAAGTTACAACTTGAGGAAGCAGTGGGATCTGGAGATTTGATAGTTTCTAGCTCTGATAGTGATTCAGATGATTCAGATGCAGATGTGGATGTTGCTATCAGTTCTAAGAGGAAGAGAAAGAAGAAGATACGAAGGATAATTGATGATGCCGAATTAGGAGAAGAGACCAAAAGAAAAATTGCGATTGAAAAGGAACGTCAAGAGCGTTTGAAGTCCTTGCAAGTACAATTTTCTGTTAAATCTAAAATGAAGTGCTCTGCTAGCTATAATGGGAATATATCTGAAGGTGTTAGTGCTGAAGTCATGGGTGATGCATCAGCTGGTTATATAGTGAATGTTATGAGAGAGAAAGGTGAAGAACCTGTGAGAATTCCTCCAAGCCTTTCATCAAAATTGAAGGCTCATCAGATTATGGGCGTAAGGTTTATGTGGGAGAACATCGTACAATCTATCAGAGAAGTGAAGTCTGGGGATAAAGGGCTTGGTTGTATTCTAGCTCACATGATGGGCCTTGGTAAAACGCTTCAGGTTATTACTTTTCTGTATACTGCAATGAGAAGTATCGATTTGGGATTAAAAACTGCACTTATTGTCACTCCTGTTAATGTGCTGCATAATTGGCGGCAAGAGTTTTTGAAGTGGAGACCTTCAGAAGTAAAGCCTCTTCGGATCTTCATGCTAGAAGATGTGTCAAGGGAGAGGAGACTAGAGTTGCTTGCAAAATGGAGAGCTAAGGGTGGTGTTTTCTTGATTGGCTACTCCGCTTTCAGAAACTTATCCCTTGGAAAGCATGTGAAGGATCGGAACATGGCTAGAGAAATTTGTCATGCCTTGCAGGATGGACCAGATATACTTGTTTGTGATGAGGCCCATATTATTAAGAATACCAAGGCCGATGTAACCCAGGCCTTGAAACAAGTTAGATGCCAAAGAAGAATAGCATTAACTGGATCACCTCTTCAGAACAATCTCATGGAATATTATTGTATGGTTGATTTTGTAAGGGAAGGTTTTCTTGGAAGTAGCCACGACTTCCAGAATCCCATTGAGAATGGTCAGCATACTAATTCAACTGTGGAAGATGTGAAAATCATGAATCAGAGATCGCATATTCTGTATGAACAGTTGAAAGGATTTGTTCAAAGAATGGACATGAGCGTGGTGAAGAAGGACTTACCACCTAAAACTGTCTTTGTGATAACTGTGAGGCTTTCTCCCATACAGAAGAAATTGTACAAGAGATTCCTTGATGTGCACGGATTCACTACTGACAAGATTTATAATGAAAAGATGAAAAGAGGTTTTTTCGCTGGCTACCAGGCCTTAGCTCAGATATGGAACCATCCAGGGATATTGCAATTGAGAAAAGATGACAAAGACTATGTGAGGCATGAAGATGGTGTTGAGAATTTTCTTGCTGATGACAGCTCTAGTGATGAAAACACTGACTATATAGGAGAGAAGCAAGGGAATGTCAATGAAATTTTGCCAGGAAAAAAGATGATGGTTACTTTCAGAAGGGTGCTGAAATCTGATTGGTGGAATGATCTCATCCATGAAAATAATTACAAGGAGCTTGATTATAGTGGCAAAATGGTATTGCTGCTTGAAATTCTATCTATGTGCTCCGATGTGGGTGATAAGGCATTGGTATTTAGTCAGAGCATACCAACTCTTGATCTGATAGAACTTTACCTTGCAAGATTACCTCGACATGGGAAGAGATGGAAGTTTTGGAAGAAAGGAAAAGATTGGTTTAGGCTAGATGGAAGAACAGAGAGCTCAGAAAGGCAAAAACTGGTTGAGCGCTTTAATGATCCTGTAAATAAGAGGGTGAGATGCACTCTAATTTCCACCAAAGCTGGATCTTTGGGGATAAATCTTCATGCTGCTAACCGTGTAATCATAGTTGATGGGTCTTGGAATCCAACCTATGATCTTCAGGCTATCTATCGTGCTTGGAGGTATGGCCAAACAAAGCCGGTGTTTGCTTACAGATTGATGGCACATGGAACTATGGAAGAAAAAATTTATAAGCGTCAGGTAACAAAGGAGGGCCTGGCTGCAAGGGTAGTGGATAGACAACAGGTACATAGGACAATATCTAAAGAAGAGATGTTACATCTTTTTGAGTTTGGTGACGATGAAAACCATGATGGGCCTGAGCAAGATAACAGAGCTAATCAAAGTATCACTGGTTCAGTGGAAAATTTGCCTAAGCACGGACCACATCTTTCTCATGGAAGTTGTGCTTCTGACAAATTAATGGAAAGATTAATTGGCAAGCATTATCCGAGTTGGATTGCTAATTTTCACTTACATGAGACACTATTGCAAGAGAATGAAGAGGAAAAGCTATCAAAAGAAGAGCAAGACATGGCTTGGGAGGTATACCGGAAATCATTTGAATGGGAGGAAGTGAAGCAAGTTCCTGTCAGTGAATCTGCAGTTGACCAAAAGCCAGAGCCAGCTGCATCAACTGTGAACTCGCCTGCAATAGAGATGATCAGCCTTGCAGAATCCAAGGTGAGGGATACTTATGTGCAGCGGAAATGCACTAAGCTTTCACATGTGCTGACCCTTAGAAGTCAAGGTACAAAATCTGGTTGCACCACTGTGTGTGGGGAATGTGCTCGAGAGATAAGCTGGGAGGGTTTGCATCAAGAAGGCAAATCTGCAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000775 GO:0000785 GO:0000792 GO:0000902 GO:0000904 GO:0001674 GO:0001932 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005700 GO:0005701 GO:0005721 GO:0005722 GO:0006139 GO:0006259 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006336 GO:0006342 GO:0006355 GO:0006725 GO:0006807 GO:0006915 GO:0006928 GO:0006935 GO:0006996 GO:0007154 GO:0007165 GO:0007275 GO:0007399 GO:0007409 GO:0007411 GO:0008150 GO:0008152 GO:0008219 GO:0008347 GO:0009555 GO:0009605 GO:0009653 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0009987 GO:0010369 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010646 GO:0012501 GO:0016043 GO:0016458 GO:0016462 GO:0016477 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019220 GO:0019222 GO:0022008 GO:0022607 GO:0023051 GO:0023052 GO:0030030 GO:0030154 GO:0030182 GO:0031175 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031399 GO:0031497 GO:0032268 GO:0032501 GO:0032502 GO:0032872 GO:0032989 GO:0032990 GO:0033043 GO:0033044 GO:0034401 GO:0034622 GO:0034641 GO:0034724 GO:0034728 GO:0035556 GO:0040011 GO:0040029 GO:0042063 GO:0042221 GO:0042325 GO:0042330 GO:0042393 GO:0042585 GO:0043007 GO:0043073 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043408 GO:0043570 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0046328 GO:0046483 GO:0048229 GO:0048468 GO:0048519 GO:0048523 GO:0048583 GO:0048666 GO:0048667 GO:0048699 GO:0048731 GO:0048812 GO:0048856 GO:0048858 GO:0048869 GO:0048870 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051172 GO:0051174 GO:0051179 GO:0051246 GO:0051252 GO:0051253 GO:0051276 GO:0051674 GO:0051716 GO:0060255 GO:0061564 GO:0065003 GO:0065004 GO:0065007 GO:0070302 GO:0070828 GO:0070868 GO:0071103 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0097190 GO:0097193 GO:0097485 GO:0097549 GO:0098687 GO:0120036 GO:0120039 GO:1900049 GO:1901360 GO:1902275 GO:1902531 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

1451

Amino Acids

164.33

Weight (kDa)

5.61

Isoelectric Point (pI)

50.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SNF2-rel_dom PF00176 692 - 1007 1.6e-50 SNF2-related domain
ResIII PF04851 701 - 876 1.7e-06 Type III restriction enzyme, res subunit
Helicase_C PF00271 1088 - 1214 6e-19 Helicase conserved C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0010370)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 390, 2952, 3705
AccI GTMKAC 3 cut(s) 822, 2216, 4062
AciI CCGC 4 cut(s) 734, 2293, 2433, 4219
AclWI GGATC 8 cut(s) 878, 1404, 1705, 2348, 2478, 2629, 3482, 3544
AcoI YGGCCR 1 cut(s) 3640
AdeI CACNNNGTG 1 cut(s) 4290
AfaI GTAC 5 cut(s) 1896, 2115, 2906, 3762, 4267
AfeI AGCGCT 3 cut(s) 180, 685, 3479
AfiI CCNNNNNNNGG 4 cut(s) 19, 3386, 3893, 4200
AflIII ACRYGT 1 cut(s) 4240
AjiI CACGTC 1 cut(s) 19
AjnI CCWGG 6 cut(s) 766, 2574, 2988, 3016, 3160, 3729
AjuI GAANNNNNNNTTGG 4 cut(s) 2670, 2702, 3933, 3965
AleI CACNNNNGTG 1 cut(s) 4286
Alw21I GWGCWC 8 cut(s) 315, 340, 1237, 1928, 2928, 3299, 3455, 4306
Alw44I GTGCAC 1 cut(s) 2924
AlwI GGATC 8 cut(s) 878, 1404, 1705, 2348, 2478, 2629, 3482, 3544
AlwNI CAGNNNCTG 1 cut(s) 902
Ama87I CYCGRG 1 cut(s) 4305
Aor51HI AGCGCT 3 cut(s) 180, 685, 3479
ApaLI GTGCAC 1 cut(s) 2924
AseI ATTAAT 2 cut(s) 3935, 3947
Asp700I GAANNNNTTC 2 cut(s) 1065, 2682
AspLEI GCGC 4 cut(s) 181, 686, 1512, 3480
AsuNHI GCTAGC 2 cut(s) 725, 1931
AvaI CYCGRG 1 cut(s) 4305
AvaII GGWCC 3 cut(s) 1269, 2513, 3896
BaeGI GKGCMC 1 cut(s) 2928
BaeI ACNNNNGTAYC 2 cut(s) 4197, 4230
BalI TGGCCA 1 cut(s) 3642
BanII GRGCYC 2 cut(s) 315, 3455
BarI GAAGNNNNNNTAC 8 cut(s) 2319, 2351, 2888, 2920, 3774, 3806, 4249, 4281
BbsI GAAGAC 1 cut(s) 303
Bbv12I GWGCWC 8 cut(s) 315, 340, 1237, 1928, 2928, 3299, 3455, 4306
BceAI ACGGC 1 cut(s) 1390
BciT130I CCWGG 6 cut(s) 768, 2576, 2990, 3018, 3162, 3731
BciVI GTATCC 1 cut(s) 4198
BclI TGATCA 2 cut(s) 1075, 4176
BfmI CTRYAG 5 cut(s) 162, 581, 1326, 1661, 4116
BfoI RGCGCY 3 cut(s) 182, 687, 3481
BfuI GTATCC 1 cut(s) 4198
BlpI GCTNAGC 1 cut(s) 309
Bme1390I CCNGG 6 cut(s) 768, 2576, 2990, 3018, 3162, 3731
Bme18I GGWCC 3 cut(s) 1269, 2513, 3896
BmeT110I CYCGRG 1 cut(s) 4305
BmgBI CACGTC 1 cut(s) 19
BmiI GGNNCC 4 cut(s) 411, 1245, 1270, 3011
BmrFI CCNGG 6 cut(s) 768, 2576, 2990, 3018, 3162, 3731
BmrI ACTGGG 2 cut(s) 463, 715
BmtI GCTAGC 2 cut(s) 729, 1935
BmuI ACTGGG 2 cut(s) 463, 715
BpiI GAAGAC 1 cut(s) 303
BplI GAGNNNNNCTC 6 cut(s) 2029, 2061, 2869, 2901, 3499, 3531
BpmI CTGGAG 3 cut(s) 789, 1452, 1722
Bpu10I CCTNAGC 5 cut(s) 171, 2403, 2995, 3834, 3888
Bpu1102I GCTNAGC 1 cut(s) 309
BpuEI CTTGAG 2 cut(s) 344, 1703
Bsa29I ATCGAT 1 cut(s) 2235
BsaI GGTCTC 3 cut(s) 1448, 1829, 2308
BsaJI CCNNGG 9 cut(s) 627, 766, 1611, 2182, 2452, 2559, 2574, 3017, 4194
BsaWI WCCGGW 1 cut(s) 4065
Bsc4I CCNNNNNNNGG 4 cut(s) 19, 3386, 3893, 4200
Bse118I RCCGGY 2 cut(s) 1240, 3652
Bse1I ACTGG 8 cut(s) 305, 458, 710, 1102, 1135, 2623, 3474, 3871
Bse3DI GCAATG 2 cut(s) 1474, 2229
BseBI CCWGG 6 cut(s) 768, 2576, 2990, 3018, 3162, 3731
BseCI ATCGAT 1 cut(s) 2235
BseDI CCNNGG 9 cut(s) 627, 766, 1611, 2182, 2452, 2559, 2574, 3017, 4194
BseGI GGATG 8 cut(s) 568, 619, 1051, 1516, 1765, 2515, 3013, 3222
BseLI CCNNNNNNNGG 4 cut(s) 19, 3386, 3893, 4200
BseMI GCAATG 2 cut(s) 1474, 2229
BseNI ACTGG 8 cut(s) 305, 458, 710, 1102, 1135, 2623, 3474, 3871
BseRI GAGGAG 6 cut(s) 137, 239, 866, 1033, 1330, 2386
BseSI GKGCMC 1 cut(s) 2928
BseYI CCCAGC 1 cut(s) 4317
BsgI GTGCAG 3 cut(s) 409, 2238, 4235
BshVI ATCGAT 1 cut(s) 2235
BsiHKAI GWGCWC 8 cut(s) 315, 340, 1237, 1928, 2928, 3299, 3455, 4306
BsiHKCI CYCGRG 1 cut(s) 4305
BsiSI CCGG 3 cut(s) 1241, 3653, 4066
BslFI GGGAC 1 cut(s) 768
BslI CCNNNNNNNGG 4 cut(s) 19, 3386, 3893, 4200
BsmBI CGTCTC 1 cut(s) 1283
BsmFI GGGAC 1 cut(s) 768
BsmI GAATGC 1 cut(s) 1607
Bso31I GGTCTC 3 cut(s) 1448, 1829, 2308
BsoBI CYCGRG 1 cut(s) 4305
Bsp1286I GDGCHC 8 cut(s) 315, 340, 1237, 1928, 2928, 3299, 3455, 4306
Bsp1407I TGTACA 1 cut(s) 2904
Bsp1720I GCTNAGC 1 cut(s) 309
BspACI CCGC 4 cut(s) 734, 2293, 2433, 4219
BspDI ATCGAT 1 cut(s) 2235
BspHI TCATGA 1 cut(s) 2763
BspLI GGNNCC 4 cut(s) 411, 1245, 1270, 3011
BspMAI CTGCAG 3 cut(s) 166, 585, 4120
BspOI GCTAGC 2 cut(s) 729, 1935
BspPI GGATC 8 cut(s) 878, 1404, 1705, 2348, 2478, 2629, 3482, 3544
BspQI GCTCTTC 1 cut(s) 4032
BspTNI GGTCTC 3 cut(s) 1448, 1829, 2308
BsrDI GCAATG 2 cut(s) 1474, 2229
BsrFI RCCGGY 2 cut(s) 1240, 3652
BsrGI TGTACA 1 cut(s) 2904
BsrI ACTGG 8 cut(s) 305, 458, 710, 1102, 1135, 2623, 3474, 3871
BssAI RCCGGY 2 cut(s) 1240, 3652
BssECI CCNNGG 9 cut(s) 627, 766, 1611, 2182, 2452, 2559, 2574, 3017, 4194
BssNAI GTATAC 3 cut(s) 823, 2217, 4063
BssT1I CCWWGG 5 cut(s) 1611, 2182, 2452, 2559, 4194
Bst1107I GTATAC 3 cut(s) 823, 2217, 4063
Bst2UI CCWGG 6 cut(s) 768, 2576, 2990, 3018, 3162, 3731
BstAUI TGTACA 1 cut(s) 2904
BstF5I GGATG 8 cut(s) 568, 619, 1051, 1516, 1765, 2515, 3013, 3222
BstH2I RGCGCY 3 cut(s) 182, 687, 3481
BstHHI GCGC 4 cut(s) 181, 686, 1512, 3480
BstMWI GCNNNNNNNGC 8 cut(s) 167, 176, 319, 905, 1098, 1241, 1932, 2290
BstNI CCWGG 6 cut(s) 768, 2576, 2990, 3018, 3162, 3731
BstNSI RCATGY 2 cut(s) 2465, 4244
BstSCI CCNGG 6 cut(s) 766, 2574, 2988, 3016, 3160, 3729
BstSFI CTRYAG 5 cut(s) 162, 581, 1326, 1661, 4116
BstSLI GKGCMC 1 cut(s) 2928
BstV2I GAAGAC 1 cut(s) 303
BstX2I RGATCY 3 cut(s) 1697, 2340, 3536
BstXI CCANNNNNNTGG 1 cut(s) 1625
BstYI RGATCY 3 cut(s) 1697, 2340, 3536
BstZ17I GTATAC 3 cut(s) 823, 2217, 4063
Bsu15I ATCGAT 1 cut(s) 2235
BsuI GTATCC 1 cut(s) 4198
BsuTUI ATCGAT 1 cut(s) 2235
BtrI CACGTC 1 cut(s) 19
BtsCI GGATG 8 cut(s) 568, 619, 1051, 1516, 1765, 2515, 3013, 3222
BtsI GCAGTG 2 cut(s) 1640, 1698
CaiI CAGNNNCTG 1 cut(s) 902
CciI TCATGA 1 cut(s) 2763
CfoI GCGC 4 cut(s) 181, 686, 1512, 3480
Cfr10I RCCGGY 2 cut(s) 1240, 3652
ClaI ATCGAT 1 cut(s) 2235
CseI GACGC 3 cut(s) 986, 1265, 3698
Csp6I GTAC 5 cut(s) 1895, 2114, 2905, 3761, 4266
CspCI CAANNNNNGTGG 4 cut(s) 828, 863, 3726, 3761
CviQI GTAC 5 cut(s) 1895, 2114, 2905, 3761, 4266
DraIII CACNNNGTG 1 cut(s) 4290
EaeI YGGCCR 1 cut(s) 3640
Ecl136II GAGCTC 2 cut(s) 313, 3453
Eco130I CCWWGG 5 cut(s) 1611, 2182, 2452, 2559, 4194
Eco147I AGGCCT 2 cut(s) 2579, 2993
Eco24I GRGCYC 2 cut(s) 315, 3455
Eco31I GGTCTC 3 cut(s) 1448, 1829, 2308
Eco47I GGWCC 3 cut(s) 1269, 2513, 3896
Eco47III AGCGCT 3 cut(s) 180, 685, 3479
Eco53kI GAGCTC 2 cut(s) 313, 3453
Eco88I CYCGRG 1 cut(s) 4305
EcoICRI GAGCTC 2 cut(s) 313, 3453
EcoO109I RGGNCCY 1 cut(s) 3727
EcoRI GAATTC 3 cut(s) 761, 813, 2040
EcoRII CCWGG 6 cut(s) 766, 2574, 2988, 3016, 3160, 3729
EcoT14I CCWWGG 5 cut(s) 1611, 2182, 2452, 2559, 4194
EcoT22I ATGCAT 2 cut(s) 1578, 1987
EcoT38I GRGCYC 2 cut(s) 315, 3455
ErhI CCWWGG 5 cut(s) 1611, 2182, 2452, 2559, 4194
Esp3I CGTCTC 1 cut(s) 1283
FalI AAGNNNNNCTT 6 cut(s) 2670, 2702, 2828, 2860, 3907, 3939
FaqI GGGAC 1 cut(s) 768
FbaI TGATCA 2 cut(s) 1075, 4176
FblI GTMKAC 3 cut(s) 822, 2216, 4062
FokI GGATG 8 cut(s) 575, 626, 1058, 1503, 1772, 2522, 3000, 3209
FriOI GRGCYC 2 cut(s) 315, 3455
GlaI GCGC 4 cut(s) 180, 685, 1511, 3479
GsaI CCCAGC 1 cut(s) 4321
GsuI CTGGAG 3 cut(s) 789, 1452, 1722
HaeII RGCGCY 3 cut(s) 182, 687, 3481
HapII CCGG 3 cut(s) 1241, 3653, 4066
HgaI GACGC 3 cut(s) 986, 1265, 3698
HhaI GCGC 4 cut(s) 181, 686, 1512, 3480
Hin6I GCGC 4 cut(s) 179, 684, 1510, 3478
HinP1I GCGC 4 cut(s) 179, 684, 1510, 3478
HincII GTYRAC 1 cut(s) 4123
HindII GTYRAC 1 cut(s) 4123
HindIII AAGCTT 4 cut(s) 432, 995, 1350, 4232
HpaII CCGG 3 cut(s) 1241, 3653, 4066
HpyCH4IV ACGT 2 cut(s) 18, 1867
HpyF10VI GCNNNNNNNGC 8 cut(s) 167, 176, 319, 905, 1098, 1241, 1932, 2290
HpySE526I ACGT 2 cut(s) 18, 1867
HspAI GCGC 4 cut(s) 179, 684, 1510, 3478
Ksp22I TGATCA 2 cut(s) 1075, 4176
LguI GCTCTTC 1 cut(s) 4032
LmnI GCTCC 8 cut(s) 124, 226, 415, 606, 1240, 1476, 3244, 3302
MaeII ACGT 2 cut(s) 18, 1867
MfeI CAATTG 2 cut(s) 1071, 3029
MflI RGATCY 3 cut(s) 1697, 2340, 3536
MhlI GDGCHC 8 cut(s) 315, 340, 1237, 1928, 2928, 3299, 3455, 4306
MlsI TGGCCA 1 cut(s) 3642
MluNI TGGCCA 1 cut(s) 3642
MlyI GAGTC 5 cut(s) 200, 497, 780, 1115, 1327
MmeI TCCRAC 3 cut(s) 327, 3623, 3950
Mox20I TGGCCA 1 cut(s) 3642
Mph1103I ATGCAT 2 cut(s) 1578, 1987
MroXI GAANNNNTTC 2 cut(s) 1065, 2682
MscI TGGCCA 1 cut(s) 3642
MslI CAYNNNNRTG 7 cut(s) 249, 1404, 2828, 3066, 3990, 4078, 4286
Msp20I TGGCCA 1 cut(s) 3642
MspA1I CMGCKG 5 cut(s) 266, 899, 1991, 4142, 4219
MspI CCGG 3 cut(s) 1241, 3653, 4066
MspR9I CCNGG 6 cut(s) 768, 2576, 2990, 3018, 3162, 3731
MunI CAATTG 2 cut(s) 1071, 3029
Mva1269I GAATGC 1 cut(s) 1607
MvaI CCWGG 6 cut(s) 768, 2576, 2990, 3018, 3162, 3731
MwoI GCNNNNNNNGC 8 cut(s) 167, 176, 319, 905, 1098, 1241, 1932, 2290
NheI GCTAGC 2 cut(s) 725, 1931
NlaIV GGNNCC 4 cut(s) 411, 1245, 1270, 3011
NmuCI GTSAC 5 cut(s) 14, 781, 835, 2263, 3809
NsiI ATGCAT 2 cut(s) 1578, 1987
NspI RCATGY 2 cut(s) 2465, 4244
OliI CACNNNNGTG 1 cut(s) 4286
PaeR7I CTCGAG 1 cut(s) 4305
PagI TCATGA 1 cut(s) 2763
PceI AGGCCT 2 cut(s) 2579, 2993
PciI ACATGT 1 cut(s) 4240
PciSI GCTCTTC 1 cut(s) 4032
PcsI WCGNNNNNNNCGW 1 cut(s) 1873
PctI GAATGC 1 cut(s) 1607
PdmI GAANNNNTTC 2 cut(s) 1065, 2682
PleI GAGTC 5 cut(s) 199, 496, 779, 1115, 1326
PpsI GAGTC 5 cut(s) 199, 496, 779, 1115, 1326
PscI ACATGT 1 cut(s) 4240
PshBI ATTAAT 2 cut(s) 3935, 3947
PsiI TTATAA 3 cut(s) 390, 2952, 3705
Psp124BI GAGCTC 2 cut(s) 315, 3455
Psp6I CCWGG 6 cut(s) 766, 2574, 2988, 3016, 3160, 3729
PspFI CCCAGC 1 cut(s) 4317
PspGI CCWGG 6 cut(s) 766, 2574, 2988, 3016, 3160, 3729
PspN4I GGNNCC 4 cut(s) 411, 1245, 1270, 3011
PsrI GAACNNNNNNTAC 2 cut(s) 3853, 3885
PstI CTGCAG 3 cut(s) 166, 585, 4120
PstNI CAGNNNCTG 1 cut(s) 902
PsuI RGATCY 3 cut(s) 1697, 2340, 3536
PvuII CAGCTG 4 cut(s) 266, 899, 1991, 4142
RsaI GTAC 5 cut(s) 1896, 2115, 2906, 3762, 4267
RsaNI GTAC 5 cut(s) 1895, 2114, 2905, 3761, 4266
RseI CAYNNNNRTG 7 cut(s) 249, 1404, 2828, 3066, 3990, 4078, 4286
SacI GAGCTC 2 cut(s) 315, 3455
SapI GCTCTTC 1 cut(s) 4032
SchI GAGTC 5 cut(s) 200, 497, 780, 1115, 1327
ScrFI CCNGG 6 cut(s) 768, 2576, 2990, 3018, 3162, 3731
SduI GDGCHC 8 cut(s) 315, 340, 1237, 1928, 2928, 3299, 3455, 4306
SfcI CTRYAG 5 cut(s) 162, 581, 1326, 1661, 4116
Sfr274I CTCGAG 1 cut(s) 4305
SinI GGWCC 3 cut(s) 1269, 2513, 3896
SlaI CTCGAG 1 cut(s) 4305
SmiMI CAYNNNNRTG 7 cut(s) 249, 1404, 2828, 3066, 3990, 4078, 4286
SmlI CTYRAG 3 cut(s) 323, 1682, 4305
SmoI CTYRAG 3 cut(s) 323, 1682, 4305
SseBI AGGCCT 2 cut(s) 2579, 2993
SsiI CCGC 4 cut(s) 734, 2293, 2433, 4219
SspI AATATT 3 cut(s) 790, 1591, 2651
SstI GAGCTC 2 cut(s) 315, 3455
StuI AGGCCT 2 cut(s) 2579, 2993
StyD4I CCNGG 6 cut(s) 766, 2574, 2988, 3016, 3160, 3729
StyI CCWWGG 5 cut(s) 1611, 2182, 2452, 2559, 4194
TaiI ACGT 2 cut(s) 21, 1870
TaqI TCGA 5 cut(s) 315, 1321, 2235, 3382, 4306
TatI WGTACW 2 cut(s) 1894, 2904
TauI GCSGC 1 cut(s) 2296
TseFI GTSAC 5 cut(s) 14, 781, 835, 2263, 3809
Tsp45I GTSAC 5 cut(s) 14, 781, 835, 2263, 3809
TspGWI ACGGA 3 cut(s) 1030, 2943, 3909
VneI GTGCAC 1 cut(s) 2924
VpaK11BI GGWCC 3 cut(s) 1269, 2513, 3896
VspI ATTAAT 2 cut(s) 3935, 3947
XceI RCATGY 2 cut(s) 2465, 4244
XhoI CTCGAG 1 cut(s) 4305
XmiI GTMKAC 3 cut(s) 822, 2216, 4062
XmnI GAANNNNTTC 2 cut(s) 1065, 2682
Zsp2I ATGCAT 2 cut(s) 1578, 1987
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.