Transcriptional regulator
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G08600 AT1G08600 AT1G08600 AT1G08600 |
| fragaria_vesca | FvH4_6g01581 |
| malus_domestica | MD00G1149200.v1.1 MD04G1232200.v1.1 |
| prunus_persica | Prupe.6G351600_v2.0.a1 Prupe.6G351600_v2.0.a1 |
| pyrus_communis | pycom04g20560 pycom12g22990 |
| rosa_chinensis | RchiOBHm_Chr3g0449401 |
| rosa_laevigata | RLG00000025834 |
| rosa_multiflora | Rmu_ssc0000423.1_g000001 |
| rosa_roxburghii | Rroxscaffold_6G00427360 |
| rosa_rugosa | Rorug02G0620400 |
| rosa_samantha | Rh3AG018100 Rh3BG018400 Rh3CG017300 Rh3DG018800 |
| rosa_wichuraiana | Rw3G001450 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 4 cut(s) | 519, 3129, 3405, 3870 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 109 |
| AccBSI | CCGCTC | 1 cut(s) | 3643 |
| AccI | GTMKAC | 2 cut(s) | 2381, 4227 |
| AciI | CCGC | 7 cut(s) | 863, 1301, 2458, 2598, 2878, 3643, 4384 |
| AclWI | GGATC | 8 cut(s) | 941, 1467, 1870, 2513, 2643, 2794, 3647, 3709 |
| AcoI | YGGCCR | 1 cut(s) | 3805 |
| AcyI | GRCGYC | 1 cut(s) | 71 |
| AdeI | CACNNNGTG | 1 cut(s) | 4455 |
| AfaI | GTAC | 6 cut(s) | 1192, 1735, 2061, 2280, 3927, 4432 |
| AfeI | AGCGCT | 2 cut(s) | 309, 814 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 109, 564, 3551, 4058, 4365 |
| AflIII | ACRYGT | 1 cut(s) | 4405 |
| AjiI | CACGTC | 1 cut(s) | 109 |
| AjnI | CCWGG | 6 cut(s) | 895, 2739, 3165, 3193, 3337, 3894 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 2835, 2867, 4098, 4130 |
| AleI | CACNNNNGTG | 1 cut(s) | 4451 |
| Alw21I | GWGCWC | 7 cut(s) | 444, 469, 1300, 2093, 3105, 3620, 4471 |
| Alw26I | GTCTC | 9 cut(s) | 327, 332, 449, 1078, 1511, 1994, 2473, 2533, 4154 |
| Alw44I | GTGCAC | 1 cut(s) | 3101 |
| AlwI | GGATC | 8 cut(s) | 941, 1467, 1870, 2513, 2643, 2794, 3647, 3709 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 965 |
| Ama87I | CYCGRG | 2 cut(s) | 221, 4470 |
| Aor51HI | AGCGCT | 2 cut(s) | 309, 814 |
| ApaLI | GTGCAC | 1 cut(s) | 3101 |
| AseI | ATTAAT | 2 cut(s) | 4100, 4112 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2847 |
| AspLEI | GCGC | 4 cut(s) | 310, 815, 1575, 4088 |
| AsuC2I | CCSGG | 1 cut(s) | 8 |
| AsuNHI | GCTAGC | 2 cut(s) | 854, 2096 |
| AvaI | CYCGRG | 2 cut(s) | 221, 4470 |
| AvaII | GGWCC | 3 cut(s) | 1332, 2678, 4061 |
| BaeGI | GKGCMC | 1 cut(s) | 3105 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 4362, 4395 |
| BalI | TGGCCA | 1 cut(s) | 3807 |
| BanII | GRGCYC | 2 cut(s) | 444, 3620 |
| BarI | GAAGNNNNNNTAC | 8 cut(s) | 2484, 2516, 3065, 3097, 3939, 3971, 4414, 4446 |
| BauI | CACGAG | 1 cut(s) | 2864 |
| BbsI | GAAGAC | 1 cut(s) | 432 |
| Bbv12I | GWGCWC | 7 cut(s) | 444, 469, 1300, 2093, 3105, 3620, 4471 |
| BceAI | ACGGC | 1 cut(s) | 58 |
| BciT130I | CCWGG | 6 cut(s) | 897, 2741, 3167, 3195, 3339, 3896 |
| BciVI | GTATCC | 1 cut(s) | 4363 |
| BclI | TGATCA | 1 cut(s) | 1138 |
| BcnI | CCSGG | 1 cut(s) | 8 |
| BcoDI | GTCTC | 9 cut(s) | 327, 332, 449, 1078, 1511, 1994, 2473, 2533, 4154 |
| BfmI | CTRYAG | 4 cut(s) | 291, 710, 1826, 4281 |
| BfoI | RGCGCY | 2 cut(s) | 311, 816 |
| BfuI | GTATCC | 1 cut(s) | 4363 |
| BlpI | GCTNAGC | 1 cut(s) | 438 |
| Bme1390I | CCNGG | 7 cut(s) | 8, 897, 2741, 3167, 3195, 3339, 3896 |
| Bme18I | GGWCC | 3 cut(s) | 1332, 2678, 4061 |
| BmeT110I | CYCGRG | 2 cut(s) | 221, 4470 |
| BmgBI | CACGTC | 1 cut(s) | 109 |
| BmiI | GGNNCC | 5 cut(s) | 228, 540, 1308, 1333, 3188 |
| BmrFI | CCNGG | 7 cut(s) | 8, 897, 2741, 3167, 3195, 3339, 3896 |
| BmrI | ACTGGG | 2 cut(s) | 592, 844 |
| BmtI | GCTAGC | 2 cut(s) | 858, 2100 |
| BmuI | ACTGGG | 2 cut(s) | 592, 844 |
| BpiI | GAAGAC | 1 cut(s) | 432 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 2194, 2226, 3046, 3078 |
| BpmI | CTGGAG | 3 cut(s) | 918, 1515, 1887 |
| Bpu10I | CCTNAGC | 5 cut(s) | 300, 2568, 3172, 3999, 4053 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 438 |
| BpuEI | CTTGAG | 2 cut(s) | 473, 1868 |
| BpuMI | CCSGG | 1 cut(s) | 8 |
| Bsa29I | ATCGAT | 2 cut(s) | 191, 2400 |
| BsaHI | GRCGYC | 1 cut(s) | 71 |
| BsaI | GGTCTC | 3 cut(s) | 1511, 1994, 2473 |
| BsaJI | CCNNGG | 9 cut(s) | 55, 895, 1776, 2347, 2617, 2724, 2739, 3194, 4359 |
| BsaWI | WCCGGW | 1 cut(s) | 4230 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 109, 564, 3551, 4058, 4365 |
| Bse118I | RCCGGY | 2 cut(s) | 1303, 3817 |
| Bse1I | ACTGG | 8 cut(s) | 434, 587, 839, 1165, 1198, 2788, 3639, 4036 |
| Bse3DI | GCAATG | 3 cut(s) | 1699, 1863, 2394 |
| BseBI | CCWGG | 6 cut(s) | 897, 2741, 3167, 3195, 3339, 3896 |
| BseCI | ATCGAT | 2 cut(s) | 191, 2400 |
| BseDI | CCNNGG | 9 cut(s) | 55, 895, 1776, 2347, 2617, 2724, 2739, 3194, 4359 |
| BseGI | GGATG | 8 cut(s) | 697, 748, 1114, 1579, 1930, 2680, 3190, 3387 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 109, 564, 3551, 4058, 4365 |
| BseMI | GCAATG | 3 cut(s) | 1699, 1863, 2394 |
| BseNI | ACTGG | 8 cut(s) | 434, 587, 839, 1165, 1198, 2788, 3639, 4036 |
| BseRI | GAGGAG | 6 cut(s) | 266, 368, 929, 1096, 1393, 2551 |
| BseSI | GKGCMC | 1 cut(s) | 3105 |
| BseYI | CCCAGC | 1 cut(s) | 4482 |
| BsgI | GTGCAG | 3 cut(s) | 538, 2403, 4400 |
| BshVI | ATCGAT | 2 cut(s) | 191, 2400 |
| BsiHKAI | GWGCWC | 7 cut(s) | 444, 469, 1300, 2093, 3105, 3620, 4471 |
| BsiHKCI | CYCGRG | 2 cut(s) | 221, 4470 |
| BsiSI | CCGG | 4 cut(s) | 8, 1304, 3818, 4231 |
| BslFI | GGGAC | 2 cut(s) | 51, 897 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 109, 564, 3551, 4058, 4365 |
| BsmAI | GTCTC | 9 cut(s) | 327, 332, 449, 1078, 1511, 1994, 2473, 2533, 4154 |
| BsmFI | GGGAC | 2 cut(s) | 51, 897 |
| BsmI | GAATGC | 1 cut(s) | 1772 |
| Bso31I | GGTCTC | 3 cut(s) | 1511, 1994, 2473 |
| BsoBI | CYCGRG | 2 cut(s) | 221, 4470 |
| Bsp1286I | GDGCHC | 7 cut(s) | 444, 469, 1300, 2093, 3105, 3620, 4471 |
| Bsp1407I | TGTACA | 1 cut(s) | 1733 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 438 |
| BspACI | CCGC | 7 cut(s) | 863, 1301, 2458, 2598, 2878, 3643, 4384 |
| BspDI | ATCGAT | 2 cut(s) | 191, 2400 |
| BspHI | TCATGA | 1 cut(s) | 2940 |
| BspLI | GGNNCC | 5 cut(s) | 228, 540, 1308, 1333, 3188 |
| BspMAI | CTGCAG | 3 cut(s) | 295, 714, 4285 |
| BspOI | GCTAGC | 2 cut(s) | 858, 2100 |
| BspPI | GGATC | 8 cut(s) | 941, 1467, 1870, 2513, 2643, 2794, 3647, 3709 |
| BspQI | GCTCTTC | 1 cut(s) | 4197 |
| BspTNI | GGTCTC | 3 cut(s) | 1511, 1994, 2473 |
| BsrBI | CCGCTC | 1 cut(s) | 3643 |
| BsrDI | GCAATG | 3 cut(s) | 1699, 1863, 2394 |
| BsrFI | RCCGGY | 2 cut(s) | 1303, 3817 |
| BsrGI | TGTACA | 1 cut(s) | 1733 |
| BsrI | ACTGG | 8 cut(s) | 434, 587, 839, 1165, 1198, 2788, 3639, 4036 |
| BssAI | RCCGGY | 2 cut(s) | 1303, 3817 |
| BssECI | CCNNGG | 9 cut(s) | 55, 895, 1776, 2347, 2617, 2724, 2739, 3194, 4359 |
| BssNAI | GTATAC | 2 cut(s) | 2382, 4228 |
| BssNI | GRCGYC | 1 cut(s) | 71 |
| BssSI | CACGAG | 1 cut(s) | 2864 |
| BssT1I | CCWWGG | 6 cut(s) | 55, 1776, 2347, 2617, 2724, 4359 |
| Bst1107I | GTATAC | 2 cut(s) | 2382, 4228 |
| Bst2BI | CACGAG | 1 cut(s) | 2864 |
| Bst2UI | CCWGG | 6 cut(s) | 897, 2741, 3167, 3195, 3339, 3896 |
| BstACI | GRCGYC | 1 cut(s) | 71 |
| BstAUI | TGTACA | 1 cut(s) | 1733 |
| BstF5I | GGATG | 8 cut(s) | 697, 748, 1114, 1579, 1930, 2680, 3190, 3387 |
| BstH2I | RGCGCY | 2 cut(s) | 311, 816 |
| BstHHI | GCGC | 4 cut(s) | 310, 815, 1575, 4088 |
| BstMAI | GTCTC | 9 cut(s) | 327, 332, 449, 1078, 1511, 1994, 2473, 2533, 4154 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 51, 296, 305, 448, 968, 1161, 1304, 2097, 2455 |
| BstNI | CCWGG | 6 cut(s) | 897, 2741, 3167, 3195, 3339, 3896 |
| BstNSI | RCATGY | 2 cut(s) | 2630, 4409 |
| BstSCI | CCNGG | 7 cut(s) | 6, 895, 2739, 3165, 3193, 3337, 3894 |
| BstSFI | CTRYAG | 4 cut(s) | 291, 710, 1826, 4281 |
| BstSLI | GKGCMC | 1 cut(s) | 3105 |
| BstV2I | GAAGAC | 1 cut(s) | 432 |
| BstX2I | RGATCY | 3 cut(s) | 1862, 2505, 3701 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1790 |
| BstYI | RGATCY | 3 cut(s) | 1862, 2505, 3701 |
| BstZ17I | GTATAC | 2 cut(s) | 2382, 4228 |
| Bsu15I | ATCGAT | 2 cut(s) | 191, 2400 |
| BsuI | GTATCC | 1 cut(s) | 4363 |
| BsuTUI | ATCGAT | 2 cut(s) | 191, 2400 |
| BtrI | CACGTC | 1 cut(s) | 109 |
| BtsCI | GGATG | 8 cut(s) | 697, 748, 1114, 1579, 1930, 2680, 3190, 3387 |
| BtsI | GCAGTG | 1 cut(s) | 1805 |
| BtsIMutI | CAGTG | 9 cut(s) | 580, 832, 1317, 1408, 1805, 3291, 4029, 4279, 4449 |
| CaiI | CAGNNNCTG | 1 cut(s) | 965 |
| CciI | TCATGA | 1 cut(s) | 2940 |
| CfoI | GCGC | 4 cut(s) | 310, 815, 1575, 4088 |
| Cfr10I | RCCGGY | 2 cut(s) | 1303, 3817 |
| ClaI | ATCGAT | 2 cut(s) | 191, 2400 |
| CseI | GACGC | 4 cut(s) | 79, 1049, 1328, 3863 |
| Csp6I | GTAC | 6 cut(s) | 1191, 1734, 2060, 2279, 3926, 4431 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 3891, 3926 |
| CviQI | GTAC | 6 cut(s) | 1191, 1734, 2060, 2279, 3926, 4431 |
| DraIII | CACNNNGTG | 1 cut(s) | 4455 |
| EaeI | YGGCCR | 1 cut(s) | 3805 |
| EciI | GGCGGA | 1 cut(s) | 1290 |
| Ecl136II | GAGCTC | 2 cut(s) | 442, 3618 |
| Eco130I | CCWWGG | 6 cut(s) | 55, 1776, 2347, 2617, 2724, 4359 |
| Eco147I | AGGCCT | 2 cut(s) | 2744, 3170 |
| Eco24I | GRGCYC | 2 cut(s) | 444, 3620 |
| Eco31I | GGTCTC | 3 cut(s) | 1511, 1994, 2473 |
| Eco32I | GATATC | 1 cut(s) | 195 |
| Eco47I | GGWCC | 3 cut(s) | 1332, 2678, 4061 |
| Eco47III | AGCGCT | 2 cut(s) | 309, 814 |
| Eco53kI | GAGCTC | 2 cut(s) | 442, 3618 |
| Eco88I | CYCGRG | 2 cut(s) | 221, 4470 |
| EcoICRI | GAGCTC | 2 cut(s) | 442, 3618 |
| EcoO109I | RGGNCCY | 1 cut(s) | 3892 |
| EcoRI | GAATTC | 2 cut(s) | 890, 2205 |
| EcoRII | CCWGG | 6 cut(s) | 895, 2739, 3165, 3193, 3337, 3894 |
| EcoRV | GATATC | 1 cut(s) | 195 |
| EcoT14I | CCWWGG | 6 cut(s) | 55, 1776, 2347, 2617, 2724, 4359 |
| EcoT22I | ATGCAT | 2 cut(s) | 1641, 2152 |
| EcoT38I | GRGCYC | 2 cut(s) | 444, 3620 |
| ErhI | CCWWGG | 6 cut(s) | 55, 1776, 2347, 2617, 2724, 4359 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 2835, 2867, 3005, 3037, 4072, 4104 |
| FaqI | GGGAC | 2 cut(s) | 51, 897 |
| FbaI | TGATCA | 1 cut(s) | 1138 |
| FblI | GTMKAC | 2 cut(s) | 2381, 4227 |
| FokI | GGATG | 8 cut(s) | 704, 755, 1121, 1566, 1937, 2687, 3177, 3374 |
| FriOI | GRGCYC | 2 cut(s) | 444, 3620 |
| GlaI | GCGC | 4 cut(s) | 309, 814, 1574, 4087 |
| GsaI | CCCAGC | 1 cut(s) | 4486 |
| GsuI | CTGGAG | 3 cut(s) | 918, 1515, 1887 |
| HaeII | RGCGCY | 2 cut(s) | 311, 816 |
| HapII | CCGG | 4 cut(s) | 8, 1304, 3818, 4231 |
| HgaI | GACGC | 4 cut(s) | 79, 1049, 1328, 3863 |
| HhaI | GCGC | 4 cut(s) | 310, 815, 1575, 4088 |
| Hin1I | GRCGYC | 1 cut(s) | 71 |
| Hin6I | GCGC | 4 cut(s) | 308, 813, 1573, 4086 |
| HinP1I | GCGC | 4 cut(s) | 308, 813, 1573, 4086 |
| HincII | GTYRAC | 1 cut(s) | 4288 |
| HindII | GTYRAC | 1 cut(s) | 4288 |
| HindIII | AAGCTT | 4 cut(s) | 561, 1058, 1413, 4397 |
| HpaII | CCGG | 4 cut(s) | 8, 1304, 3818, 4231 |
| Hpy166II | GTNNAC | 8 cut(s) | 680, 847, 1103, 2382, 3103, 4228, 4288, 4321 |
| Hpy8I | GTNNAC | 8 cut(s) | 680, 847, 1103, 2382, 3103, 4228, 4288, 4321 |
| Hpy99I | CGWCG | 2 cut(s) | 73, 797 |
| HpyCH4IV | ACGT | 3 cut(s) | 108, 1838, 2032 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 51, 296, 305, 448, 968, 1161, 1304, 2097, 2455 |
| HpySE526I | ACGT | 3 cut(s) | 108, 1838, 2032 |
| Hsp92I | GRCGYC | 1 cut(s) | 71 |
| HspAI | GCGC | 4 cut(s) | 308, 813, 1573, 4086 |
| KroI | GCCGGC | 1 cut(s) | 1303 |
| KroNI | GCCGGC | 1 cut(s) | 1305 |
| Ksp22I | TGATCA | 1 cut(s) | 1138 |
| LguI | GCTCTTC | 1 cut(s) | 4197 |
| LmnI | GCTCC | 8 cut(s) | 253, 355, 544, 735, 1303, 1539, 1664, 3409 |
| MaeII | ACGT | 3 cut(s) | 108, 1838, 2032 |
| MaeIII | GTNAC | 9 cut(s) | 1238, 1289, 1839, 2428, 2734, 3356, 3880, 3954, 3974 |
| MbiI | CCGCTC | 1 cut(s) | 3643 |
| MfeI | CAATTG | 2 cut(s) | 1134, 3206 |
| MflI | RGATCY | 3 cut(s) | 1862, 2505, 3701 |
| MhlI | GDGCHC | 7 cut(s) | 444, 469, 1300, 2093, 3105, 3620, 4471 |
| MlsI | TGGCCA | 1 cut(s) | 3807 |
| MluNI | TGGCCA | 1 cut(s) | 3807 |
| MlyI | GAGTC | 6 cut(s) | 5, 329, 626, 909, 1178, 1390 |
| MmeI | TCCRAC | 5 cut(s) | 456, 816, 1237, 3788, 4115 |
| Mox20I | TGGCCA | 1 cut(s) | 3807 |
| Mph1103I | ATGCAT | 2 cut(s) | 1641, 2152 |
| MroNI | GCCGGC | 1 cut(s) | 1303 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2847 |
| MscI | TGGCCA | 1 cut(s) | 3807 |
| MslI | CAYNNNNRTG | 7 cut(s) | 378, 1467, 3005, 3243, 4155, 4243, 4451 |
| Msp20I | TGGCCA | 1 cut(s) | 3807 |
| MspA1I | CMGCKG | 5 cut(s) | 395, 962, 2156, 4307, 4384 |
| MspI | CCGG | 4 cut(s) | 8, 1304, 3818, 4231 |
| MspR9I | CCNGG | 7 cut(s) | 8, 897, 2741, 3167, 3195, 3339, 3896 |
| MunI | CAATTG | 2 cut(s) | 1134, 3206 |
| Mva1269I | GAATGC | 1 cut(s) | 1772 |
| MvaI | CCWGG | 6 cut(s) | 897, 2741, 3167, 3195, 3339, 3896 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 51, 296, 305, 448, 968, 1161, 1304, 2097, 2455 |
| NaeI | GCCGGC | 1 cut(s) | 1305 |
| NciI | CCSGG | 1 cut(s) | 8 |
| NgoMIV | GCCGGC | 1 cut(s) | 1303 |
| NheI | GCTAGC | 2 cut(s) | 854, 2096 |
| NlaIV | GGNNCC | 5 cut(s) | 228, 540, 1308, 1333, 3188 |
| NmuCI | GTSAC | 2 cut(s) | 2428, 3974 |
| NsiI | ATGCAT | 2 cut(s) | 1641, 2152 |
| NspI | RCATGY | 2 cut(s) | 2630, 4409 |
| OliI | CACNNNNGTG | 1 cut(s) | 4451 |
| PaeR7I | CTCGAG | 2 cut(s) | 221, 4470 |
| PagI | TCATGA | 1 cut(s) | 2940 |
| PceI | AGGCCT | 2 cut(s) | 2744, 3170 |
| PciI | ACATGT | 1 cut(s) | 4405 |
| PciSI | GCTCTTC | 1 cut(s) | 4197 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 2038 |
| PctI | GAATGC | 1 cut(s) | 1772 |
| PdiI | GCCGGC | 1 cut(s) | 1305 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2847 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 109 |
| PleI | GAGTC | 6 cut(s) | 5, 328, 625, 908, 1178, 1389 |
| PpsI | GAGTC | 6 cut(s) | 5, 328, 625, 908, 1178, 1389 |
| PscI | ACATGT | 1 cut(s) | 4405 |
| PshBI | ATTAAT | 2 cut(s) | 4100, 4112 |
| PsiI | TTATAA | 4 cut(s) | 519, 3129, 3405, 3870 |
| Psp124BI | GAGCTC | 2 cut(s) | 444, 3620 |
| Psp6I | CCWGG | 6 cut(s) | 895, 2739, 3165, 3193, 3337, 3894 |
| PspFI | CCCAGC | 1 cut(s) | 4482 |
| PspGI | CCWGG | 6 cut(s) | 895, 2739, 3165, 3193, 3337, 3894 |
| PspN4I | GGNNCC | 5 cut(s) | 228, 540, 1308, 1333, 3188 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 4018, 4050 |
| PstI | CTGCAG | 3 cut(s) | 295, 714, 4285 |
| PstNI | CAGNNNCTG | 1 cut(s) | 965 |
| PsuI | RGATCY | 3 cut(s) | 1862, 2505, 3701 |
| PvuII | CAGCTG | 4 cut(s) | 395, 962, 2156, 4307 |
| RsaI | GTAC | 6 cut(s) | 1192, 1735, 2061, 2280, 3927, 4432 |
| RsaNI | GTAC | 6 cut(s) | 1191, 1734, 2060, 2279, 3926, 4431 |
| RseI | CAYNNNNRTG | 7 cut(s) | 378, 1467, 3005, 3243, 4155, 4243, 4451 |
| SacI | GAGCTC | 2 cut(s) | 444, 3620 |
| SapI | GCTCTTC | 1 cut(s) | 4197 |
| SchI | GAGTC | 6 cut(s) | 5, 329, 626, 909, 1178, 1390 |
| ScrFI | CCNGG | 7 cut(s) | 8, 897, 2741, 3167, 3195, 3339, 3896 |
| SduI | GDGCHC | 7 cut(s) | 444, 469, 1300, 2093, 3105, 3620, 4471 |
| SfcI | CTRYAG | 4 cut(s) | 291, 710, 1826, 4281 |
| Sfr274I | CTCGAG | 2 cut(s) | 221, 4470 |
| SinI | GGWCC | 3 cut(s) | 1332, 2678, 4061 |
| SlaI | CTCGAG | 2 cut(s) | 221, 4470 |
| SmiMI | CAYNNNNRTG | 7 cut(s) | 378, 1467, 3005, 3243, 4155, 4243, 4451 |
| SmlI | CTYRAG | 4 cut(s) | 221, 452, 1847, 4470 |
| SmoI | CTYRAG | 4 cut(s) | 221, 452, 1847, 4470 |
| SseBI | AGGCCT | 2 cut(s) | 2744, 3170 |
| SsiI | CCGC | 7 cut(s) | 863, 1301, 2458, 2598, 2878, 3643, 4384 |
| SspI | AATATT | 2 cut(s) | 1756, 2816 |
| SstI | GAGCTC | 2 cut(s) | 444, 3620 |
| StuI | AGGCCT | 2 cut(s) | 2744, 3170 |
| StyD4I | CCNGG | 7 cut(s) | 6, 895, 2739, 3165, 3193, 3337, 3894 |
| StyI | CCWWGG | 6 cut(s) | 55, 1776, 2347, 2617, 2724, 4359 |
| TaiI | ACGT | 3 cut(s) | 111, 1841, 2035 |
| TaqI | TCGA | 8 cut(s) | 191, 222, 444, 1384, 2400, 3547, 4041, 4471 |
| TatI | WGTACW | 3 cut(s) | 1190, 1733, 2059 |
| TauI | GCSGC | 1 cut(s) | 2461 |
| TscAI | CASTG | 9 cut(s) | 587, 839, 1324, 1408, 1805, 3298, 4036, 4279, 4456 |
| TseFI | GTSAC | 2 cut(s) | 2428, 3974 |
| Tsp45I | GTSAC | 2 cut(s) | 2428, 3974 |
| TspGWI | ACGGA | 4 cut(s) | 1093, 1526, 3120, 4074 |
| TspRI | CASTG | 9 cut(s) | 587, 839, 1324, 1408, 1805, 3298, 4036, 4279, 4456 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 109 |
| VneI | GTGCAC | 1 cut(s) | 3101 |
| VpaK11BI | GGWCC | 3 cut(s) | 1332, 2678, 4061 |
| VspI | ATTAAT | 2 cut(s) | 4100, 4112 |
| XceI | RCATGY | 2 cut(s) | 2630, 4409 |
| XhoI | CTCGAG | 2 cut(s) | 221, 4470 |
| XmiI | GTMKAC | 2 cut(s) | 2381, 4227 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2847 |
| Zsp2I | ATGCAT | 2 cut(s) | 1641, 2152 |