Rmu_ssc0000423.1_g000001

Transcriptional regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000423.1
OG0010370
Physical Location & Seq
Forward (+)
462 .. 7533
7072 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000423.1_g000001.1.cds

Sequence Viewer

Length: 2799 bp
atgttattttgtacaacttgtataaagaggaatattggagaggaatgcttatccaaggcccagaccgatggctggcagtgttgttcctgttgcccaagtctcatacagacattgaagttacaatttgaggaagcaatgggatctggagatttgatagtttctagctctgatagtgattcagatgattcagatgcagatgtggatgttgctatcagttctaagaggaagagaaagaagaagatacgaaggataattgatgataccgaattgggagaagagaccaaaagaaaaattgcgattgaaaaggaacgtcaagagcgtttgaagtccttgcaagtacaattttctgtcaaatctaaactgaagtgctctgctagctataatgggaatatatctgaaggtgttagtgctgaagtcatgggtgatgcatcagctggttatatagtgaatgttatgagagagaaaggtgaagaacctgtgagaattcctccaagcctttcatcaaaattgaaggctcatcagattatgggcgtaaggtttatgtgggagaacatcgtacaatctatcagagaagtgaagtctggggataaagggcttggttgtattctagctcacatgatgggccttggtaaaacgcttcaggttattacttttctgtatactgcaatgagaagtatcgatttgggattaaaaactgcacttattgtcactcctgttaatgtgctgcataattggcggcaagagttcttgaagtggagaccttcagaagtaaagcctcttcggatcttcatgctagaagatgtgtcaagggagaggagactagagttgcttgcaaaatggagagctaagggtggtgttttcttgattggctactccgctttcagaaacttatcccttggaaagcatgtgaaggatcggaacatggctagagaaatttgtcatgccttacaggatggacctgatatacttgtttgtgatgaggcccatattattaagaataccaaggccgatgtaacccaggccttgaaacaagttagatgccaaagaagaatagcattaactggatcacctcttcagaacaatctcatggaatattattgtatggttgattttgtaagggaaggttttcttggaagtagccacgagtttagaaaccgcttccagaatcccattgagaatggtcagcatactaattcaactgtggaagatgtgaaaatcatgaatcagagatcgcatattctgtatgaacagttgaaaggatttgttcaaagaatggacatgagtgtggtgaagaaggacttaccacctaaaactgtctttgtgattactgtgaggctttctcccatacagaagaaattatacaagagattccttgatgtgcacggattcactactgacaagatttataatgaaaagatgaaaagaggttttttcgctggctaccaggccttagctcagatatggaaccatccagggatattgcaattgagaaaagatgacaaagactatgtgaggcatgaagatggtgttgagaattttcttgctgatgacagctctagtgatgaaaacactgactatataggagagaagcaagggaatgtcaatgaaattttgccaggaaaaaaagatgatggttactttcagaaggattggtggaatgatctcatccatgaaaataattataaggagcttgattatagtggcaaaatggtattgctgcttgaaattctatctatgtgttctgatgtgggtgataaggcattggtatttagtcagagcataccaactcttgatctgatagaactttaccttgcaagattacctcgacatgggaagagatggaagttttggaagaaaggaaaagattggtttaggctagatggtagaacagagagctcagaaaggcaaaaactggttgagcgctttaatgatcctgcaaataagagggtgaaatgcactctaatttccaccaaagctggatctttggggataaatcttcatgctgctaaccgtgtaatcatagttgatgggtcttggaatccaacctatgatcttcaggctatctatcgttcttggaggtatggccaaacaaagccggtgtttgcttacagattgatggcacatggaactatggaagaaaaaatttataagcgtcaggtaacaaaggagggcctggctgcaagggtagtggatagacaacaggtacataggacaatatctaaagaagagatgttacatctttttgagtttggtgacgatgaaaaccatgatgggcctgagcaagataacagagctaatcaaagtatcactggttcagtcgaaaatttgcctaagcacggaccacatctttctcatggaagttgcgcttctgacaaattaatggaaagattaattggcaagcattatccgagttggattgctaattttcacttacatgagacactattgcaagagaatgaagaggaaaagctatcaaaagaagagcaagacatggcttgggaagtataccggaaatcatttgaatgggaggaagtgaagcaagttcctgtcagtgaatctgcagttgaccaaaagccagagccagctgcatcaactgtgaactcgcctgcaatagagatgagcagccttgcagaatccaaggtgagggatacttatgtgcagcggaaatgcactaagctttcacatgtgctgacccttagaagtcaaggtacaaaatctggttgcaccactgtgtgtggggaatgtgctcgagagataagctgggagggtttgcatcaagaaggcaagtctgcaaaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000775 GO:0000785 GO:0000792 GO:0000902 GO:0000904 GO:0001674 GO:0001932 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005700 GO:0005701 GO:0005721 GO:0005722 GO:0006139 GO:0006259 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006336 GO:0006342 GO:0006355 GO:0006725 GO:0006807 GO:0006915 GO:0006928 GO:0006935 GO:0006996 GO:0007154 GO:0007165 GO:0007275 GO:0007399 GO:0007409 GO:0007411 GO:0008150 GO:0008152 GO:0008219 GO:0008347 GO:0009555 GO:0009605 GO:0009653 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0009987 GO:0010369 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010646 GO:0012501 GO:0016043 GO:0016458 GO:0016462 GO:0016477 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019220 GO:0019222 GO:0022008 GO:0022607 GO:0023051 GO:0023052 GO:0030030 GO:0030154 GO:0030182 GO:0031175 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031399 GO:0031497 GO:0032268 GO:0032501 GO:0032502 GO:0032872 GO:0032989 GO:0032990 GO:0033043 GO:0033044 GO:0034401 GO:0034622 GO:0034641 GO:0034724 GO:0034728 GO:0035556 GO:0040011 GO:0040029 GO:0042063 GO:0042221 GO:0042325 GO:0042330 GO:0042393 GO:0042585 GO:0043007 GO:0043073 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043408 GO:0043570 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0046328 GO:0046483 GO:0048229 GO:0048468 GO:0048519 GO:0048523 GO:0048583 GO:0048666 GO:0048667 GO:0048699 GO:0048731 GO:0048812 GO:0048856 GO:0048858 GO:0048869 GO:0048870 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051172 GO:0051174 GO:0051179 GO:0051246 GO:0051252 GO:0051253 GO:0051276 GO:0051674 GO:0051716 GO:0060255 GO:0061564 GO:0065003 GO:0065004 GO:0065007 GO:0070302 GO:0070828 GO:0070868 GO:0071103 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0097190 GO:0097193 GO:0097485 GO:0097549 GO:0098687 GO:0120036 GO:0120039 GO:1900049 GO:1901360 GO:1902275 GO:1902531 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Helicase_C SNF2_N

Protein Analysis

932

Amino Acids

106.58

Weight (kDa)

8.57

Isoelectric Point (pI)

44.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010370)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08600 AT1G08600 AT1G08600 AT1G08600
fragaria_vesca FvH4_6g01581
malus_domestica MD00G1149200.v1.1 MD04G1232200.v1.1
prunus_persica Prupe.6G351600_v2.0.a1 Prupe.6G351600_v2.0.a1
pyrus_communis pycom04g20560 pycom12g22990
rosa_chinensis RchiOBHm_Chr3g0449401
rosa_laevigata RLG00000025834
rosa_multiflora Rmu_ssc0000423.1_g000001
rosa_roxburghii Rroxscaffold_6G00427360
rosa_rugosa Rorug02G0620400
rosa_samantha Rh3AG018100 Rh3BG018400 Rh3CG017300 Rh3DG018800
rosa_wichuraiana Rw3G001450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 1407, 1683, 2148
AccI GTMKAC 2 cut(s) 659, 2505
AciI CCGC 4 cut(s) 736, 876, 1156, 2662
AclWI GGATC 6 cut(s) 148, 791, 921, 1072, 1925, 1987
AcoI YGGCCR 1 cut(s) 2083
AcsI RAATTY 7 cut(s) 483, 933, 1534, 1608, 1725, 2142, 2323
AcuI CTGAAG 7 cut(s) 383, 417, 432, 623, 747, 1058, 2039
AdeI CACNNNGTG 1 cut(s) 2733
AfaI GTAC 5 cut(s) 13, 339, 558, 2205, 2710
AfeI AGCGCT 1 cut(s) 1922
AfiI CCNNNNNNNGG 4 cut(s) 72, 1829, 2336, 2643
AflIII ACRYGT 1 cut(s) 2683
AjnI CCWGG 5 cut(s) 1017, 1443, 1471, 1615, 2172
AjuI GAANNNNNNNTTGG 4 cut(s) 1113, 1145, 2376, 2408
AleI CACNNNNGTG 1 cut(s) 2729
Alw21I GWGCWC 4 cut(s) 371, 1383, 1898, 2749
Alw26I GTCTC 5 cut(s) 104, 272, 751, 811, 2432
Alw44I GTGCAC 1 cut(s) 1379
AlwI GGATC 6 cut(s) 148, 791, 921, 1072, 1925, 1987
Ama87I CYCGRG 1 cut(s) 2748
Aor51HI AGCGCT 1 cut(s) 1922
AoxI GGCC 9 cut(s) 57, 622, 981, 1005, 1020, 1446, 2083, 2170, 2273
ApaLI GTGCAC 1 cut(s) 1379
ApeKI GCWGC 7 cut(s) 724, 1717, 2003, 2177, 2585, 2622, 2659
ApoI RAATTY 7 cut(s) 483, 933, 1534, 1608, 1725, 2142, 2323
AseI ATTAAT 2 cut(s) 2378, 2390
Asp700I GAANNNNTTC 1 cut(s) 1125
AspLEI GCGC 2 cut(s) 1923, 2366
AspS9I GGNCC 7 cut(s) 58, 622, 956, 982, 2170, 2273, 2339
AsuHPI GGTGA 8 cut(s) 434, 479, 1059, 1300, 1763, 1960, 2264, 2653
AsuNHI GCTAGC 1 cut(s) 374
AvaI CYCGRG 1 cut(s) 2748
AvaII GGWCC 2 cut(s) 956, 2339
BaeGI GKGCMC 1 cut(s) 1383
BaeI ACNNNNGTAYC 2 cut(s) 2640, 2673
BalI TGGCCA 1 cut(s) 2085
BanII GRGCYC 1 cut(s) 1898
BarI GAAGNNNNNNTAC 8 cut(s) 762, 794, 1343, 1375, 2217, 2249, 2692, 2724
BauI CACGAG 1 cut(s) 1142
Bbv12I GWGCWC 4 cut(s) 371, 1383, 1898, 2749
BbvI GCAGC 7 cut(s) 711, 1704, 1990, 2164, 2572, 2634, 2671
BciT130I CCWGG 5 cut(s) 1019, 1445, 1473, 1617, 2174
BciVI GTATCC 1 cut(s) 2641
BcoDI GTCTC 5 cut(s) 104, 272, 751, 811, 2432
BfaI CTAG 8 cut(s) 162, 375, 608, 794, 821, 927, 1557, 1877
BfmI CTRYAG 1 cut(s) 2559
BfoI RGCGCY 1 cut(s) 1924
BfuI GTATCC 1 cut(s) 2641
BisI GCNGC 8 cut(s) 725, 737, 1718, 2004, 2178, 2586, 2623, 2660
BlsI GCNGC 8 cut(s) 726, 738, 1719, 2005, 2179, 2587, 2624, 2661
Bme1390I CCNGG 5 cut(s) 1019, 1445, 1473, 1617, 2174
Bme18I GGWCC 2 cut(s) 956, 2339
BmeT110I CYCGRG 1 cut(s) 2748
BmgT120I GGNCC 7 cut(s) 58, 622, 956, 982, 2170, 2273, 2339
BmiI GGNNCC 1 cut(s) 1466
BmrFI CCNGG 5 cut(s) 1019, 1445, 1473, 1617, 2174
BmsI GCATC 6 cut(s) 181, 415, 437, 1028, 2597, 2782
BmtI GCTAGC 1 cut(s) 378
BplI GAGNNNNNCTC 4 cut(s) 472, 504, 1324, 1356
BpmI CTGGAG 1 cut(s) 165
Bpu10I CCTNAGC 4 cut(s) 846, 1450, 2277, 2331
Bsa29I ATCGAT 1 cut(s) 678
BsaI GGTCTC 2 cut(s) 272, 751
BsaJI CCNNGG 7 cut(s) 54, 625, 895, 1002, 1017, 1472, 2637
BsaWI WCCGGW 1 cut(s) 2508
Bsc4I CCNNNNNNNGG 4 cut(s) 72, 1829, 2336, 2643
Bse118I RCCGGY 1 cut(s) 2095
Bse1I ACTGG 3 cut(s) 1066, 1917, 2314
Bse3DI GCAATG 2 cut(s) 141, 672
BseBI CCWGG 5 cut(s) 1019, 1445, 1473, 1617, 2174
BseCI ATCGAT 1 cut(s) 678
BseDI CCNNGG 7 cut(s) 54, 625, 895, 1002, 1017, 1472, 2637
BseGI GGATG 4 cut(s) 208, 958, 1468, 1665
BseLI CCNNNNNNNGG 4 cut(s) 72, 1829, 2336, 2643
BseMI GCAATG 2 cut(s) 141, 672
BseMII CTCAG 3 cut(s) 1469, 1911, 2268
BseNI ACTGG 3 cut(s) 1066, 1917, 2314
BseRI GAGGAG 1 cut(s) 829
BseSI GKGCMC 1 cut(s) 1383
BseXI GCAGC 7 cut(s) 711, 1704, 1990, 2164, 2572, 2634, 2671
BseYI CCCAGC 1 cut(s) 2760
BsgI GTGCAG 2 cut(s) 681, 2678
BshFI GGCC 9 cut(s) 59, 624, 983, 1007, 1022, 1448, 2085, 2172, 2275
BshVI ATCGAT 1 cut(s) 678
BsiHKAI GWGCWC 4 cut(s) 371, 1383, 1898, 2749
BsiHKCI CYCGRG 1 cut(s) 2748
BsiSI CCGG 2 cut(s) 2096, 2509
BslI CCNNNNNNNGG 4 cut(s) 72, 1829, 2336, 2643
BsmAI GTCTC 5 cut(s) 104, 272, 751, 811, 2432
BsmI GAATGC 1 cut(s) 50
BsnI GGCC 9 cut(s) 59, 624, 983, 1007, 1022, 1448, 2085, 2172, 2275
Bso31I GGTCTC 2 cut(s) 272, 751
BsoBI CYCGRG 1 cut(s) 2748
Bsp1286I GDGCHC 4 cut(s) 371, 1383, 1898, 2749
Bsp1407I TGTACA 1 cut(s) 11
BspACI CCGC 4 cut(s) 736, 876, 1156, 2662
BspANI GGCC 9 cut(s) 59, 624, 983, 1007, 1022, 1448, 2085, 2172, 2275
BspCNI CTCAG 3 cut(s) 1468, 1910, 2269
BspDI ATCGAT 1 cut(s) 678
BspHI TCATGA 1 cut(s) 1218
BspLI GGNNCC 1 cut(s) 1466
BspMAI CTGCAG 1 cut(s) 2563
BspOI GCTAGC 1 cut(s) 378
BspPI GGATC 6 cut(s) 148, 791, 921, 1072, 1925, 1987
BspQI GCTCTTC 1 cut(s) 2475
BspTNI GGTCTC 2 cut(s) 272, 751
BsrDI GCAATG 2 cut(s) 141, 672
BsrFI RCCGGY 1 cut(s) 2095
BsrGI TGTACA 1 cut(s) 11
BsrI ACTGG 3 cut(s) 1066, 1917, 2314
BssAI RCCGGY 1 cut(s) 2095
BssECI CCNNGG 7 cut(s) 54, 625, 895, 1002, 1017, 1472, 2637
BssNAI GTATAC 2 cut(s) 660, 2506
BssSI CACGAG 1 cut(s) 1142
BssT1I CCWWGG 5 cut(s) 54, 625, 895, 1002, 2637
Bst1107I GTATAC 2 cut(s) 660, 2506
Bst2BI CACGAG 1 cut(s) 1142
Bst2UI CCWGG 5 cut(s) 1019, 1445, 1473, 1617, 2174
Bst4CI ACNGT 7 cut(s) 1201, 1251, 1315, 1330, 2012, 2596, 2731
Bst6I CTCTTC 8 cut(s) 221, 270, 783, 1077, 1829, 2220, 2454, 2475
BstAUI TGTACA 1 cut(s) 11
BstC8I GCNNGC 7 cut(s) 74, 376, 831, 1438, 2399, 2583, 2607
BstDEI CTNAG 9 cut(s) 219, 846, 1450, 1455, 1897, 2277, 2331, 2673, 2696
BstF5I GGATG 4 cut(s) 208, 958, 1468, 1665
BstH2I RGCGCY 1 cut(s) 1924
BstHHI GCGC 2 cut(s) 1923, 2366
BstMAI GTCTC 5 cut(s) 104, 272, 751, 811, 2432
BstMWI GCNNNNNNNGC 2 cut(s) 375, 733
BstNI CCWGG 5 cut(s) 1019, 1445, 1473, 1617, 2174
BstNSI RCATGY 2 cut(s) 908, 2687
BstSCI CCNGG 5 cut(s) 1017, 1443, 1471, 1615, 2172
BstSFI CTRYAG 1 cut(s) 2559
BstSLI GKGCMC 1 cut(s) 1383
BstV1I GCAGC 7 cut(s) 711, 1704, 1990, 2164, 2572, 2634, 2671
BstX2I RGATCY 3 cut(s) 140, 783, 1979
BstXI CCANNNNNNTGG 1 cut(s) 68
BstYI RGATCY 3 cut(s) 140, 783, 1979
BstZ17I GTATAC 2 cut(s) 660, 2506
Bsu15I ATCGAT 1 cut(s) 678
BsuI GTATCC 1 cut(s) 2641
BsuRI GGCC 9 cut(s) 59, 624, 983, 1007, 1022, 1448, 2085, 2172, 2275
BsuTUI ATCGAT 1 cut(s) 678
BtsCI GGATG 4 cut(s) 208, 958, 1468, 1665
BtsI GCAGTG 1 cut(s) 83
BtsIMutI CAGTG 5 cut(s) 83, 1569, 2307, 2557, 2727
Cac8I GCNNGC 7 cut(s) 74, 376, 831, 1438, 2399, 2583, 2607
CciI TCATGA 1 cut(s) 1218
CfoI GCGC 2 cut(s) 1923, 2366
Cfr10I RCCGGY 1 cut(s) 2095
Cfr13I GGNCC 7 cut(s) 58, 622, 956, 982, 2170, 2273, 2339
ClaI ATCGAT 1 cut(s) 678
CseI GACGC 1 cut(s) 2141
Csp6I GTAC 5 cut(s) 12, 338, 557, 2204, 2709
CspCI CAANNNNNGTGG 2 cut(s) 2169, 2204
CviQI GTAC 5 cut(s) 12, 338, 557, 2204, 2709
DdeI CTNAG 9 cut(s) 219, 846, 1450, 1455, 1897, 2277, 2331, 2673, 2696
DraIII CACNNNGTG 1 cut(s) 2733
EaeI YGGCCR 1 cut(s) 2083
Eam1104I CTCTTC 8 cut(s) 221, 270, 783, 1077, 1829, 2220, 2454, 2475
EarI CTCTTC 8 cut(s) 221, 270, 783, 1077, 1829, 2220, 2454, 2475
Ecl136II GAGCTC 1 cut(s) 1896
Eco130I CCWWGG 5 cut(s) 54, 625, 895, 1002, 2637
Eco147I AGGCCT 2 cut(s) 1022, 1448
Eco24I GRGCYC 1 cut(s) 1898
Eco31I GGTCTC 2 cut(s) 272, 751
Eco47I GGWCC 2 cut(s) 956, 2339
Eco47III AGCGCT 1 cut(s) 1922
Eco53kI GAGCTC 1 cut(s) 1896
Eco57I CTGAAG 7 cut(s) 383, 417, 432, 623, 747, 1058, 2039
Eco88I CYCGRG 1 cut(s) 2748
EcoICRI GAGCTC 1 cut(s) 1896
EcoO109I RGGNCCY 1 cut(s) 2170
EcoRI GAATTC 1 cut(s) 483
EcoRII CCWGG 5 cut(s) 1017, 1443, 1471, 1615, 2172
EcoT14I CCWWGG 5 cut(s) 54, 625, 895, 1002, 2637
EcoT22I ATGCAT 1 cut(s) 430
EcoT38I GRGCYC 1 cut(s) 1898
ErhI CCWWGG 5 cut(s) 54, 625, 895, 1002, 2637
FalI AAGNNNNNCTT 6 cut(s) 1113, 1145, 1283, 1315, 2350, 2382
FblI GTMKAC 2 cut(s) 659, 2505
Fnu4HI GCNGC 8 cut(s) 725, 737, 1718, 2004, 2178, 2586, 2623, 2660
FokI GGATG 4 cut(s) 215, 965, 1455, 1652
FriOI GRGCYC 1 cut(s) 1898
Fsp4HI GCNGC 8 cut(s) 725, 737, 1718, 2004, 2178, 2586, 2623, 2660
FspBI CTAG 8 cut(s) 162, 375, 608, 794, 821, 927, 1557, 1877
GlaI GCGC 2 cut(s) 1922, 2365
GluI GCNGC 8 cut(s) 725, 737, 1718, 2004, 2178, 2586, 2623, 2660
GsaI CCCAGC 1 cut(s) 2764
GsuI CTGGAG 1 cut(s) 165
HaeII RGCGCY 1 cut(s) 1924
HaeIII GGCC 9 cut(s) 59, 624, 983, 1007, 1022, 1448, 2085, 2172, 2275
HapII CCGG 2 cut(s) 2096, 2509
HgaI GACGC 1 cut(s) 2141
HhaI GCGC 2 cut(s) 1923, 2366
Hin6I GCGC 2 cut(s) 1921, 2364
HinP1I GCGC 2 cut(s) 1921, 2364
HincII GTYRAC 1 cut(s) 2566
HindII GTYRAC 1 cut(s) 2566
HindIII AAGCTT 1 cut(s) 2675
HinfI GANTC 9 cut(s) 176, 185, 1165, 1222, 1368, 1386, 2038, 2555, 2633
HpaII CCGG 2 cut(s) 2096, 2509
HphI GGTGA 8 cut(s) 434, 479, 1059, 1300, 1763, 1960, 2264, 2653
Hpy166II GTNNAC 5 cut(s) 660, 1381, 2506, 2566, 2599
Hpy188III TCNNGA 9 cut(s) 144, 314, 748, 862, 1162, 1219, 1790, 2750, 2777
Hpy8I GTNNAC 5 cut(s) 660, 1381, 2506, 2566, 2599
HpyAV CCTTC 9 cut(s) 240, 392, 505, 771, 904, 1115, 1288, 1639, 2774
HpyCH4III ACNGT 7 cut(s) 1201, 1251, 1315, 1330, 2012, 2596, 2731
HpyCH4IV ACGT 1 cut(s) 310
HpyF10VI GCNNNNNNNGC 2 cut(s) 375, 733
HpyF3I CTNAG 9 cut(s) 219, 846, 1450, 1455, 1897, 2277, 2331, 2673, 2696
HpySE526I ACGT 1 cut(s) 310
HspAI GCGC 2 cut(s) 1921, 2364
LguI GCTCTTC 1 cut(s) 2475
LmnI GCTCC 1 cut(s) 1687
Lsp1109I GCAGC 7 cut(s) 711, 1704, 1990, 2164, 2572, 2634, 2671
LweI GCATC 6 cut(s) 181, 415, 437, 1028, 2597, 2782
MaeI CTAG 8 cut(s) 162, 375, 608, 794, 821, 927, 1557, 1877
MaeII ACGT 1 cut(s) 310
MaeIII GTNAC 7 cut(s) 117, 706, 1012, 1634, 2158, 2232, 2252
MfeI CAATTG 1 cut(s) 1484
MflI RGATCY 3 cut(s) 140, 783, 1979
MhlI GDGCHC 4 cut(s) 371, 1383, 1898, 2749
MlsI TGGCCA 1 cut(s) 2085
MluNI TGGCCA 1 cut(s) 2085
MmeI TCCRAC 2 cut(s) 2066, 2393
Mox20I TGGCCA 1 cut(s) 2085
Mph1103I ATGCAT 1 cut(s) 430
MroXI GAANNNNTTC 1 cut(s) 1125
MscI TGGCCA 1 cut(s) 2085
MseI TTAA 7 cut(s) 689, 717, 993, 1058, 1926, 2378, 2390
MslI CAYNNNNRTG 5 cut(s) 1283, 1521, 2433, 2521, 2729
Msp20I TGGCCA 1 cut(s) 2085
MspA1I CMGCKG 3 cut(s) 434, 2585, 2662
MspI CCGG 2 cut(s) 2096, 2509
MspR9I CCNGG 5 cut(s) 1019, 1445, 1473, 1617, 2174
MunI CAATTG 1 cut(s) 1484
Mva1269I GAATGC 1 cut(s) 50
MvaI CCWGG 5 cut(s) 1019, 1445, 1473, 1617, 2174
MwoI GCNNNNNNNGC 2 cut(s) 375, 733
NheI GCTAGC 1 cut(s) 374
NlaIV GGNNCC 1 cut(s) 1466
NmuCI GTSAC 2 cut(s) 706, 2252
NsiI ATGCAT 1 cut(s) 430
NspI RCATGY 2 cut(s) 908, 2687
OliI CACNNNNGTG 1 cut(s) 2729
PaeR7I CTCGAG 1 cut(s) 2748
PagI TCATGA 1 cut(s) 1218
PceI AGGCCT 2 cut(s) 1022, 1448
PciI ACATGT 1 cut(s) 2683
PciSI GCTCTTC 1 cut(s) 2475
PcsI WCGNNNNNNNCGW 1 cut(s) 316
PctI GAATGC 1 cut(s) 50
PdmI GAANNNNTTC 1 cut(s) 1125
PfeI GAWTC 9 cut(s) 176, 185, 1165, 1222, 1368, 1386, 2038, 2555, 2633
PkrI GCNGC 8 cut(s) 726, 738, 1719, 2005, 2179, 2587, 2624, 2661
PscI ACATGT 1 cut(s) 2683
PshBI ATTAAT 2 cut(s) 2378, 2390
PsiI TTATAA 3 cut(s) 1407, 1683, 2148
Psp124BI GAGCTC 1 cut(s) 1898
Psp6I CCWGG 5 cut(s) 1017, 1443, 1471, 1615, 2172
PspFI CCCAGC 1 cut(s) 2760
PspGI CCWGG 5 cut(s) 1017, 1443, 1471, 1615, 2172
PspN4I GGNNCC 1 cut(s) 1466
PspPI GGNCC 7 cut(s) 58, 622, 956, 982, 2170, 2273, 2339
PsrI GAACNNNNNNTAC 2 cut(s) 2296, 2328
PstI CTGCAG 1 cut(s) 2563
PsuI RGATCY 3 cut(s) 140, 783, 1979
PvuII CAGCTG 2 cut(s) 434, 2585
RsaI GTAC 5 cut(s) 13, 339, 558, 2205, 2710
RsaNI GTAC 5 cut(s) 12, 338, 557, 2204, 2709
RseI CAYNNNNRTG 5 cut(s) 1283, 1521, 2433, 2521, 2729
SacI GAGCTC 1 cut(s) 1898
SapI GCTCTTC 1 cut(s) 2475
SaqAI TTAA 7 cut(s) 689, 717, 993, 1058, 1926, 2378, 2390
SatI GCNGC 8 cut(s) 725, 737, 1718, 2004, 2178, 2586, 2623, 2660
Sau96I GGNCC 7 cut(s) 58, 622, 956, 982, 2170, 2273, 2339
ScrFI CCNGG 5 cut(s) 1019, 1445, 1473, 1617, 2174
SduI GDGCHC 4 cut(s) 371, 1383, 1898, 2749
SfaNI GCATC 6 cut(s) 181, 415, 437, 1028, 2597, 2782
SfcI CTRYAG 1 cut(s) 2559
Sfr274I CTCGAG 1 cut(s) 2748
SinI GGWCC 2 cut(s) 956, 2339
SlaI CTCGAG 1 cut(s) 2748
SmiMI CAYNNNNRTG 5 cut(s) 1283, 1521, 2433, 2521, 2729
SmlI CTYRAG 1 cut(s) 2748
SmoI CTYRAG 1 cut(s) 2748
SseBI AGGCCT 2 cut(s) 1022, 1448
SsiI CCGC 4 cut(s) 736, 876, 1156, 2662
SspI AATATT 2 cut(s) 34, 1094
SspMI CTAG 8 cut(s) 162, 375, 608, 794, 821, 927, 1557, 1877
SstI GAGCTC 1 cut(s) 1898
StuI AGGCCT 2 cut(s) 1022, 1448
StyD4I CCNGG 5 cut(s) 1017, 1443, 1471, 1615, 2172
StyI CCWWGG 5 cut(s) 54, 625, 895, 1002, 2637
TaaI ACNGT 7 cut(s) 1201, 1251, 1315, 1330, 2012, 2596, 2731
TaiI ACGT 1 cut(s) 313
TaqI TCGA 4 cut(s) 678, 1825, 2319, 2749
TaqII GACCGA 1 cut(s) 80
TatI WGTACW 2 cut(s) 11, 337
TauI GCSGC 1 cut(s) 739
TfiI GAWTC 9 cut(s) 176, 185, 1165, 1222, 1368, 1386, 2038, 2555, 2633
Tru1I TTAA 7 cut(s) 689, 717, 993, 1058, 1926, 2378, 2390
Tru9I TTAA 7 cut(s) 689, 717, 993, 1058, 1926, 2378, 2390
TscAI CASTG 5 cut(s) 83, 1576, 2314, 2557, 2734
TseFI GTSAC 2 cut(s) 706, 2252
TseI GCWGC 7 cut(s) 724, 1717, 2003, 2177, 2585, 2622, 2659
Tsp45I GTSAC 2 cut(s) 706, 2252
TspGWI ACGGA 2 cut(s) 1398, 2352
TspRI CASTG 5 cut(s) 83, 1576, 2314, 2557, 2734
VneI GTGCAC 1 cut(s) 1379
VpaK11BI GGWCC 2 cut(s) 956, 2339
VspI ATTAAT 2 cut(s) 2378, 2390
XapI RAATTY 7 cut(s) 483, 933, 1534, 1608, 1725, 2142, 2323
XceI RCATGY 2 cut(s) 908, 2687
XhoI CTCGAG 1 cut(s) 2748
XmiI GTMKAC 2 cut(s) 659, 2505
XmnI GAANNNNTTC 1 cut(s) 1125
XspI CTAG 8 cut(s) 162, 375, 608, 794, 821, 927, 1557, 1877
Zsp2I ATGCAT 1 cut(s) 430
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.