Transcriptional regulator
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G08600 AT1G08600 AT1G08600 AT1G08600 |
| fragaria_vesca | FvH4_6g01581 |
| malus_domestica | MD00G1149200.v1.1 MD04G1232200.v1.1 |
| prunus_persica | Prupe.6G351600_v2.0.a1 Prupe.6G351600_v2.0.a1 |
| pyrus_communis | pycom04g20560 pycom12g22990 |
| rosa_chinensis | RchiOBHm_Chr3g0449401 |
| rosa_laevigata | RLG00000025834 |
| rosa_multiflora | Rmu_ssc0000423.1_g000001 |
| rosa_roxburghii | Rroxscaffold_6G00427360 |
| rosa_rugosa | Rorug02G0620400 |
| rosa_samantha | Rh3AG018100 Rh3BG018400 Rh3CG017300 Rh3DG018800 |
| rosa_wichuraiana | Rw3G001450 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 4 cut(s) | 429, 3039, 3315, 3780 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 19 |
| AccI | GTMKAC | 2 cut(s) | 2291, 4137 |
| AciI | CCGC | 5 cut(s) | 773, 2368, 2508, 2788, 4294 |
| AclWI | GGATC | 8 cut(s) | 851, 1377, 1780, 2423, 2553, 2704, 3557, 3619 |
| AcoI | YGGCCR | 1 cut(s) | 3715 |
| AcuI | CTGAAG | 9 cut(s) | 273, 1251, 1497, 2049, 2064, 2255, 2379, 2690, 3671 |
| AdeI | CACNNNGTG | 1 cut(s) | 4365 |
| AfaI | GTAC | 5 cut(s) | 1645, 1971, 2190, 3837, 4342 |
| AfeI | AGCGCT | 3 cut(s) | 219, 724, 3554 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 19, 474, 1704, 3461, 3968, 4275 |
| AflIII | ACRYGT | 1 cut(s) | 4315 |
| AjiI | CACGTC | 1 cut(s) | 19 |
| AjnI | CCWGG | 6 cut(s) | 805, 2649, 3075, 3103, 3247, 3804 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 2745, 2777, 4008, 4040 |
| AleI | CACNNNNGTG | 1 cut(s) | 4361 |
| Alw21I | GWGCWC | 6 cut(s) | 379, 1210, 2003, 3015, 3530, 4381 |
| Alw44I | GTGCAC | 1 cut(s) | 3011 |
| AlwI | GGATC | 8 cut(s) | 851, 1377, 1780, 2423, 2553, 2704, 3557, 3619 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 875 |
| Ama87I | CYCGRG | 2 cut(s) | 131, 4380 |
| Aor51HI | AGCGCT | 3 cut(s) | 219, 724, 3554 |
| ApaLI | GTGCAC | 1 cut(s) | 3011 |
| AseI | ATTAAT | 2 cut(s) | 4010, 4022 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2757 |
| AspLEI | GCGC | 5 cut(s) | 220, 725, 1485, 3555, 3998 |
| AsuNHI | GCTAGC | 2 cut(s) | 764, 2006 |
| AvaI | CYCGRG | 2 cut(s) | 131, 4380 |
| AvaII | GGWCC | 3 cut(s) | 1242, 2588, 3971 |
| BaeGI | GKGCMC | 1 cut(s) | 3015 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 4272, 4305 |
| BalI | TGGCCA | 1 cut(s) | 3717 |
| BanII | GRGCYC | 1 cut(s) | 3530 |
| BarI | GAAGNNNNNNTAC | 8 cut(s) | 2394, 2426, 2975, 3007, 3849, 3881, 4324, 4356 |
| BauI | CACGAG | 1 cut(s) | 2774 |
| BbsI | GAAGAC | 1 cut(s) | 342 |
| Bbv12I | GWGCWC | 6 cut(s) | 379, 1210, 2003, 3015, 3530, 4381 |
| BciT130I | CCWGG | 6 cut(s) | 807, 2651, 3077, 3105, 3249, 3806 |
| BciVI | GTATCC | 1 cut(s) | 4273 |
| BclI | TGATCA | 1 cut(s) | 1048 |
| BfmI | CTRYAG | 5 cut(s) | 201, 620, 1396, 1736, 4191 |
| BfoI | RGCGCY | 3 cut(s) | 221, 726, 3556 |
| BfuI | GTATCC | 1 cut(s) | 4273 |
| BglII | AGATCT | 1 cut(s) | 1400 |
| BlpI | GCTNAGC | 1 cut(s) | 348 |
| Bme1390I | CCNGG | 6 cut(s) | 807, 2651, 3077, 3105, 3249, 3806 |
| Bme18I | GGWCC | 3 cut(s) | 1242, 2588, 3971 |
| BmeT110I | CYCGRG | 2 cut(s) | 131, 4380 |
| BmgBI | CACGTC | 1 cut(s) | 19 |
| BmiI | GGNNCC | 5 cut(s) | 138, 450, 1218, 1243, 3098 |
| BmrFI | CCNGG | 6 cut(s) | 807, 2651, 3077, 3105, 3249, 3806 |
| BmrI | ACTGGG | 2 cut(s) | 502, 754 |
| BmsI | GCATC | 9 cut(s) | 136, 529, 1431, 1813, 2047, 2069, 2660, 4229, 4414 |
| BmtI | GCTAGC | 2 cut(s) | 768, 2010 |
| BmuI | ACTGGG | 2 cut(s) | 502, 754 |
| BpiI | GAAGAC | 1 cut(s) | 342 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 2104, 2136, 2956, 2988 |
| BpmI | CTGGAG | 3 cut(s) | 828, 1425, 1797 |
| Bpu10I | CCTNAGC | 5 cut(s) | 210, 2478, 3082, 3909, 3963 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 348 |
| BpuEI | CTTGAG | 1 cut(s) | 383 |
| Bsa29I | ATCGAT | 2 cut(s) | 101, 2310 |
| BsaI | GGTCTC | 3 cut(s) | 1421, 1904, 2383 |
| BsaJI | CCNNGG | 8 cut(s) | 805, 1686, 2257, 2527, 2634, 2649, 3104, 4269 |
| BsaWI | WCCGGW | 1 cut(s) | 4140 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 19, 474, 1704, 3461, 3968, 4275 |
| Bse118I | RCCGGY | 2 cut(s) | 1213, 3727 |
| Bse1I | ACTGG | 8 cut(s) | 344, 497, 749, 1075, 1108, 2698, 3549, 3946 |
| Bse3DI | GCAATG | 3 cut(s) | 1609, 1773, 2304 |
| BseBI | CCWGG | 6 cut(s) | 807, 2651, 3077, 3105, 3249, 3806 |
| BseCI | ATCGAT | 2 cut(s) | 101, 2310 |
| BseDI | CCNNGG | 8 cut(s) | 805, 1686, 2257, 2527, 2634, 2649, 3104, 4269 |
| BseGI | GGATG | 8 cut(s) | 607, 658, 1024, 1489, 1840, 2590, 3100, 3297 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 19, 474, 1704, 3461, 3968, 4275 |
| BseMI | GCAATG | 3 cut(s) | 1609, 1773, 2304 |
| BseNI | ACTGG | 8 cut(s) | 344, 497, 749, 1075, 1108, 2698, 3549, 3946 |
| BseRI | GAGGAG | 5 cut(s) | 176, 278, 839, 1006, 2461 |
| BseSI | GKGCMC | 1 cut(s) | 3015 |
| BseYI | CCCAGC | 1 cut(s) | 4392 |
| BsgI | GTGCAG | 3 cut(s) | 448, 2313, 4310 |
| BshVI | ATCGAT | 2 cut(s) | 101, 2310 |
| BsiHKAI | GWGCWC | 6 cut(s) | 379, 1210, 2003, 3015, 3530, 4381 |
| BsiHKCI | CYCGRG | 2 cut(s) | 131, 4380 |
| BsiSI | CCGG | 3 cut(s) | 1214, 3728, 4141 |
| BslFI | GGGAC | 1 cut(s) | 807 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 19, 474, 1704, 3461, 3968, 4275 |
| BsmFI | GGGAC | 1 cut(s) | 807 |
| BsmI | GAATGC | 1 cut(s) | 1682 |
| Bso31I | GGTCTC | 3 cut(s) | 1421, 1904, 2383 |
| BsoBI | CYCGRG | 2 cut(s) | 131, 4380 |
| Bsp1286I | GDGCHC | 6 cut(s) | 379, 1210, 2003, 3015, 3530, 4381 |
| Bsp1407I | TGTACA | 1 cut(s) | 1643 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 348 |
| BspACI | CCGC | 5 cut(s) | 773, 2368, 2508, 2788, 4294 |
| BspDI | ATCGAT | 2 cut(s) | 101, 2310 |
| BspHI | TCATGA | 1 cut(s) | 2850 |
| BspLI | GGNNCC | 5 cut(s) | 138, 450, 1218, 1243, 3098 |
| BspMAI | CTGCAG | 4 cut(s) | 205, 624, 1400, 4195 |
| BspOI | GCTAGC | 2 cut(s) | 768, 2010 |
| BspPI | GGATC | 8 cut(s) | 851, 1377, 1780, 2423, 2553, 2704, 3557, 3619 |
| BspQI | GCTCTTC | 1 cut(s) | 4107 |
| BspTNI | GGTCTC | 3 cut(s) | 1421, 1904, 2383 |
| BsrDI | GCAATG | 3 cut(s) | 1609, 1773, 2304 |
| BsrFI | RCCGGY | 2 cut(s) | 1213, 3727 |
| BsrGI | TGTACA | 1 cut(s) | 1643 |
| BsrI | ACTGG | 8 cut(s) | 344, 497, 749, 1075, 1108, 2698, 3549, 3946 |
| BssAI | RCCGGY | 2 cut(s) | 1213, 3727 |
| BssECI | CCNNGG | 8 cut(s) | 805, 1686, 2257, 2527, 2634, 2649, 3104, 4269 |
| BssNAI | GTATAC | 2 cut(s) | 2292, 4138 |
| BssSI | CACGAG | 1 cut(s) | 2774 |
| BssT1I | CCWWGG | 5 cut(s) | 1686, 2257, 2527, 2634, 4269 |
| Bst1107I | GTATAC | 2 cut(s) | 2292, 4138 |
| Bst2BI | CACGAG | 1 cut(s) | 2774 |
| Bst2UI | CCWGG | 6 cut(s) | 807, 2651, 3077, 3105, 3249, 3806 |
| BstAUI | TGTACA | 1 cut(s) | 1643 |
| BstF5I | GGATG | 8 cut(s) | 607, 658, 1024, 1489, 1840, 2590, 3100, 3297 |
| BstH2I | RGCGCY | 3 cut(s) | 221, 726, 3556 |
| BstHHI | GCGC | 5 cut(s) | 220, 725, 1485, 3555, 3998 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 206, 215, 358, 878, 1071, 1214, 2007, 2365 |
| BstNI | CCWGG | 6 cut(s) | 807, 2651, 3077, 3105, 3249, 3806 |
| BstNSI | RCATGY | 2 cut(s) | 2540, 4319 |
| BstSCI | CCNGG | 6 cut(s) | 805, 2649, 3075, 3103, 3247, 3804 |
| BstSFI | CTRYAG | 5 cut(s) | 201, 620, 1396, 1736, 4191 |
| BstSLI | GKGCMC | 1 cut(s) | 3015 |
| BstV2I | GAAGAC | 1 cut(s) | 342 |
| BstX2I | RGATCY | 4 cut(s) | 1400, 1772, 2415, 3611 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1700 |
| BstYI | RGATCY | 4 cut(s) | 1400, 1772, 2415, 3611 |
| BstZ17I | GTATAC | 2 cut(s) | 2292, 4138 |
| Bsu15I | ATCGAT | 2 cut(s) | 101, 2310 |
| BsuI | GTATCC | 1 cut(s) | 4273 |
| BsuTUI | ATCGAT | 2 cut(s) | 101, 2310 |
| BtrI | CACGTC | 1 cut(s) | 19 |
| BtsCI | GGATG | 8 cut(s) | 607, 658, 1024, 1489, 1840, 2590, 3100, 3297 |
| BtsI | GCAGTG | 1 cut(s) | 1715 |
| BtsIMutI | CAGTG | 9 cut(s) | 490, 742, 1227, 1318, 1715, 3201, 3939, 4189, 4359 |
| CaiI | CAGNNNCTG | 1 cut(s) | 875 |
| CciI | TCATGA | 1 cut(s) | 2850 |
| CfoI | GCGC | 5 cut(s) | 220, 725, 1485, 3555, 3998 |
| Cfr10I | RCCGGY | 2 cut(s) | 1213, 3727 |
| ClaI | ATCGAT | 2 cut(s) | 101, 2310 |
| CseI | GACGC | 3 cut(s) | 959, 1238, 3773 |
| Csp6I | GTAC | 5 cut(s) | 1644, 1970, 2189, 3836, 4341 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 3801, 3836 |
| CviQI | GTAC | 5 cut(s) | 1644, 1970, 2189, 3836, 4341 |
| DraIII | CACNNNGTG | 1 cut(s) | 4365 |
| EaeI | YGGCCR | 1 cut(s) | 3715 |
| Ecl136II | GAGCTC | 1 cut(s) | 3528 |
| Eco130I | CCWWGG | 5 cut(s) | 1686, 2257, 2527, 2634, 4269 |
| Eco147I | AGGCCT | 2 cut(s) | 2654, 3080 |
| Eco24I | GRGCYC | 1 cut(s) | 3530 |
| Eco31I | GGTCTC | 3 cut(s) | 1421, 1904, 2383 |
| Eco32I | GATATC | 1 cut(s) | 105 |
| Eco47I | GGWCC | 3 cut(s) | 1242, 2588, 3971 |
| Eco47III | AGCGCT | 3 cut(s) | 219, 724, 3554 |
| Eco53kI | GAGCTC | 1 cut(s) | 3528 |
| Eco57I | CTGAAG | 9 cut(s) | 273, 1251, 1497, 2049, 2064, 2255, 2379, 2690, 3671 |
| Eco88I | CYCGRG | 2 cut(s) | 131, 4380 |
| EcoICRI | GAGCTC | 1 cut(s) | 3528 |
| EcoO109I | RGGNCCY | 1 cut(s) | 3802 |
| EcoRI | GAATTC | 2 cut(s) | 800, 2115 |
| EcoRII | CCWGG | 6 cut(s) | 805, 2649, 3075, 3103, 3247, 3804 |
| EcoRV | GATATC | 1 cut(s) | 105 |
| EcoT14I | CCWWGG | 5 cut(s) | 1686, 2257, 2527, 2634, 4269 |
| EcoT22I | ATGCAT | 2 cut(s) | 1551, 2062 |
| EcoT38I | GRGCYC | 1 cut(s) | 3530 |
| ErhI | CCWWGG | 5 cut(s) | 1686, 2257, 2527, 2634, 4269 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 2745, 2777, 2915, 2947, 3982, 4014 |
| FaqI | GGGAC | 1 cut(s) | 807 |
| FauNDI | CATATG | 1 cut(s) | 3679 |
| FbaI | TGATCA | 1 cut(s) | 1048 |
| FblI | GTMKAC | 2 cut(s) | 2291, 4137 |
| FokI | GGATG | 8 cut(s) | 614, 665, 1031, 1476, 1847, 2597, 3087, 3284 |
| FriOI | GRGCYC | 1 cut(s) | 3530 |
| GlaI | GCGC | 5 cut(s) | 219, 724, 1484, 3554, 3997 |
| GsaI | CCCAGC | 1 cut(s) | 4396 |
| GsuI | CTGGAG | 3 cut(s) | 828, 1425, 1797 |
| HaeII | RGCGCY | 3 cut(s) | 221, 726, 3556 |
| HapII | CCGG | 3 cut(s) | 1214, 3728, 4141 |
| HgaI | GACGC | 3 cut(s) | 959, 1238, 3773 |
| HhaI | GCGC | 5 cut(s) | 220, 725, 1485, 3555, 3998 |
| Hin6I | GCGC | 5 cut(s) | 218, 723, 1483, 3553, 3996 |
| HinP1I | GCGC | 5 cut(s) | 218, 723, 1483, 3553, 3996 |
| HincII | GTYRAC | 1 cut(s) | 4198 |
| HindII | GTYRAC | 1 cut(s) | 4198 |
| HindIII | AAGCTT | 4 cut(s) | 471, 968, 1323, 4307 |
| HpaII | CCGG | 3 cut(s) | 1214, 3728, 4141 |
| Hpy166II | GTNNAC | 8 cut(s) | 590, 757, 1013, 2292, 3013, 4138, 4198, 4231 |
| Hpy8I | GTNNAC | 8 cut(s) | 590, 757, 1013, 2292, 3013, 4138, 4198, 4231 |
| HpyCH4IV | ACGT | 2 cut(s) | 18, 1942 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 206, 215, 358, 878, 1071, 1214, 2007, 2365 |
| HpySE526I | ACGT | 2 cut(s) | 18, 1942 |
| HspAI | GCGC | 5 cut(s) | 218, 723, 1483, 3553, 3996 |
| Ksp22I | TGATCA | 1 cut(s) | 1048 |
| LguI | GCTCTTC | 1 cut(s) | 4107 |
| LmnI | GCTCC | 7 cut(s) | 163, 265, 454, 645, 1213, 1449, 1574 |
| LweI | GCATC | 9 cut(s) | 136, 529, 1431, 1813, 2047, 2069, 2660, 4229, 4414 |
| MaeII | ACGT | 2 cut(s) | 18, 1942 |
| MaeIII | GTNAC | 9 cut(s) | 1148, 1199, 1749, 2338, 2644, 3266, 3790, 3864, 3884 |
| MfeI | CAATTG | 2 cut(s) | 1044, 3116 |
| MflI | RGATCY | 4 cut(s) | 1400, 1772, 2415, 3611 |
| MhlI | GDGCHC | 6 cut(s) | 379, 1210, 2003, 3015, 3530, 4381 |
| MlsI | TGGCCA | 1 cut(s) | 3717 |
| MluNI | TGGCCA | 1 cut(s) | 3717 |
| MlyI | GAGTC | 4 cut(s) | 239, 536, 819, 1088 |
| MmeI | TCCRAC | 3 cut(s) | 366, 3698, 4025 |
| Mox20I | TGGCCA | 1 cut(s) | 3717 |
| Mph1103I | ATGCAT | 2 cut(s) | 1551, 2062 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2757 |
| MscI | TGGCCA | 1 cut(s) | 3717 |
| MslI | CAYNNNNRTG | 7 cut(s) | 288, 1377, 2915, 3153, 4065, 4153, 4361 |
| Msp20I | TGGCCA | 1 cut(s) | 3717 |
| MspA1I | CMGCKG | 5 cut(s) | 305, 872, 2066, 4217, 4294 |
| MspI | CCGG | 3 cut(s) | 1214, 3728, 4141 |
| MspR9I | CCNGG | 6 cut(s) | 807, 2651, 3077, 3105, 3249, 3806 |
| MunI | CAATTG | 2 cut(s) | 1044, 3116 |
| Mva1269I | GAATGC | 1 cut(s) | 1682 |
| MvaI | CCWGG | 6 cut(s) | 807, 2651, 3077, 3105, 3249, 3806 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 206, 215, 358, 878, 1071, 1214, 2007, 2365 |
| NdeI | CATATG | 1 cut(s) | 3679 |
| NheI | GCTAGC | 2 cut(s) | 764, 2006 |
| NlaIV | GGNNCC | 5 cut(s) | 138, 450, 1218, 1243, 3098 |
| NmuCI | GTSAC | 2 cut(s) | 2338, 3884 |
| NsiI | ATGCAT | 2 cut(s) | 1551, 2062 |
| NspI | RCATGY | 2 cut(s) | 2540, 4319 |
| OliI | CACNNNNGTG | 1 cut(s) | 4361 |
| PaeR7I | CTCGAG | 2 cut(s) | 131, 4380 |
| PagI | TCATGA | 1 cut(s) | 2850 |
| PceI | AGGCCT | 2 cut(s) | 2654, 3080 |
| PciI | ACATGT | 1 cut(s) | 4315 |
| PciSI | GCTCTTC | 1 cut(s) | 4107 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1948 |
| PctI | GAATGC | 1 cut(s) | 1682 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2757 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 19 |
| PleI | GAGTC | 4 cut(s) | 238, 535, 818, 1088 |
| PpsI | GAGTC | 4 cut(s) | 238, 535, 818, 1088 |
| PscI | ACATGT | 1 cut(s) | 4315 |
| PshBI | ATTAAT | 2 cut(s) | 4010, 4022 |
| PsiI | TTATAA | 4 cut(s) | 429, 3039, 3315, 3780 |
| Psp124BI | GAGCTC | 1 cut(s) | 3530 |
| Psp6I | CCWGG | 6 cut(s) | 805, 2649, 3075, 3103, 3247, 3804 |
| PspFI | CCCAGC | 1 cut(s) | 4392 |
| PspGI | CCWGG | 6 cut(s) | 805, 2649, 3075, 3103, 3247, 3804 |
| PspN4I | GGNNCC | 5 cut(s) | 138, 450, 1218, 1243, 3098 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 3928, 3960 |
| PstI | CTGCAG | 4 cut(s) | 205, 624, 1400, 4195 |
| PstNI | CAGNNNCTG | 1 cut(s) | 875 |
| PsuI | RGATCY | 4 cut(s) | 1400, 1772, 2415, 3611 |
| PvuII | CAGCTG | 4 cut(s) | 305, 872, 2066, 4217 |
| RsaI | GTAC | 5 cut(s) | 1645, 1971, 2190, 3837, 4342 |
| RsaNI | GTAC | 5 cut(s) | 1644, 1970, 2189, 3836, 4341 |
| RseI | CAYNNNNRTG | 7 cut(s) | 288, 1377, 2915, 3153, 4065, 4153, 4361 |
| SacI | GAGCTC | 1 cut(s) | 3530 |
| SapI | GCTCTTC | 1 cut(s) | 4107 |
| SchI | GAGTC | 4 cut(s) | 239, 536, 819, 1088 |
| ScrFI | CCNGG | 6 cut(s) | 807, 2651, 3077, 3105, 3249, 3806 |
| SduI | GDGCHC | 6 cut(s) | 379, 1210, 2003, 3015, 3530, 4381 |
| SfaNI | GCATC | 9 cut(s) | 136, 529, 1431, 1813, 2047, 2069, 2660, 4229, 4414 |
| SfcI | CTRYAG | 5 cut(s) | 201, 620, 1396, 1736, 4191 |
| Sfr274I | CTCGAG | 2 cut(s) | 131, 4380 |
| SinI | GGWCC | 3 cut(s) | 1242, 2588, 3971 |
| SlaI | CTCGAG | 2 cut(s) | 131, 4380 |
| SmiMI | CAYNNNNRTG | 7 cut(s) | 288, 1377, 2915, 3153, 4065, 4153, 4361 |
| SmlI | CTYRAG | 3 cut(s) | 131, 362, 4380 |
| SmoI | CTYRAG | 3 cut(s) | 131, 362, 4380 |
| SseBI | AGGCCT | 2 cut(s) | 2654, 3080 |
| SsiI | CCGC | 5 cut(s) | 773, 2368, 2508, 2788, 4294 |
| SspI | AATATT | 2 cut(s) | 1666, 2726 |
| SstI | GAGCTC | 1 cut(s) | 3530 |
| StuI | AGGCCT | 2 cut(s) | 2654, 3080 |
| StyD4I | CCNGG | 6 cut(s) | 805, 2649, 3075, 3103, 3247, 3804 |
| StyI | CCWWGG | 5 cut(s) | 1686, 2257, 2527, 2634, 4269 |
| TaiI | ACGT | 2 cut(s) | 21, 1945 |
| TaqI | TCGA | 8 cut(s) | 101, 132, 354, 1294, 2310, 3457, 3951, 4381 |
| TaqII | GACCGA | 1 cut(s) | 1712 |
| TatI | WGTACW | 2 cut(s) | 1643, 1969 |
| TauI | GCSGC | 1 cut(s) | 2371 |
| TscAI | CASTG | 9 cut(s) | 497, 749, 1234, 1318, 1715, 3208, 3946, 4189, 4366 |
| TseFI | GTSAC | 2 cut(s) | 2338, 3884 |
| Tsp45I | GTSAC | 2 cut(s) | 2338, 3884 |
| TspGWI | ACGGA | 4 cut(s) | 1003, 1436, 3030, 3984 |
| TspRI | CASTG | 9 cut(s) | 497, 749, 1234, 1318, 1715, 3208, 3946, 4189, 4366 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 19 |
| VneI | GTGCAC | 1 cut(s) | 3011 |
| VpaK11BI | GGWCC | 3 cut(s) | 1242, 2588, 3971 |
| VspI | ATTAAT | 2 cut(s) | 4010, 4022 |
| XceI | RCATGY | 2 cut(s) | 2540, 4319 |
| XhoI | CTCGAG | 2 cut(s) | 131, 4380 |
| XmiI | GTMKAC | 2 cut(s) | 2291, 4137 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2757 |
| Zsp2I | ATGCAT | 2 cut(s) | 1551, 2062 |