AT1G08710

F-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0006260
Physical Location & Seq
Forward (+)
2771620 .. 2773531
1912 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G08710.2

Sequence Viewer

Length: 825 bp
ATGTCTGCAAACGAGATACCCGACGAGCTATGGAGAAAGATCCTAGAGATTGGCGTAAAGTCTTCGACTTTCTCGTACAAAGATCTTTGCTGCATCTCTATCTCCTCTCGCCGTCTCTTCCGATTGTCCTGCGATGATTCCCTCTGGGATCTTCTGCTCGTCCATGATTTCCCTAACCACATCGTCTCTGCTTCTTCTTCTTCTGAATCTCCCACCAAGTTTATCTACATGACTAGGTTTGAGAGGGAGAAGGAGAGGAAATTAGCTGCCCATAGAAGAGCTTTACTCAGGAAGGAGAGTGAAATTTCTGAATGGGGCCGGAGGATTCGTGAATTGGAGGCACGATTGTCCGACGAGGCTGAGAGACTACAGTCTTCTTCTCTGCAATTTTCAGATTTGCTGAAAGTGAGGCAAGCATCAGTAGCTTTGAACGTTTGGCAGCCGGAGGTAGTACGTGGTAGACAAAAGCAAATGGTTGAGCAAAACGCTGTTCCTGTTGAGGGTCGATTGCGTGCACTTGAGATGGAGATGAAGTTATGCAAGCAGCAAATCATGGGTTTGAATAGGGCACTTAGGGAGGTAAAACACCGATATGACATAGCAATAAAAGAGCTAGAATCCATGAAGTATCATCCTTTACGAGATTACAAGTCGATACGTAATGGAGACCAAGGAAGTAATGGCAAGACGAAAAAGTTGAAAACTAGCATCAACTATAGTGGAGACCAAGTAAGTAATGGCAAGAGGAGGAAGTTGAAAACAAGCATTGATTTTCCAGCAAAACCCAGAAACACGGAGAAGCTGTTCCAGTCAGAATCAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like

Protein Analysis

274

Amino Acids

31.89

Weight (kDa)

9.67

Isoelectric Point (pI)

55.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 460
AclI AACGTT 1 cut(s) 432
AclWI GGATC 2 cut(s) 34, 156
AcsI RAATTY 1 cut(s) 303
AfaI GTAC 2 cut(s) 77, 453
AfiI CCNNNNNNNGG 1 cut(s) 500
AgsI TTSAA 4 cut(s) 430, 562, 700, 757
AloI GAACNNNNNNTCC 2 cut(s) 788, 820
AluBI AGCT 6 cut(s) 28, 266, 281, 425, 613, 802
AluI AGCT 6 cut(s) 28, 266, 281, 425, 613, 802
Alw21I GWGCWC 1 cut(s) 517
Alw26I GTCTC 5 cut(s) 119, 190, 358, 660, 717
Alw44I GTGCAC 1 cut(s) 513
AlwI GGATC 2 cut(s) 34, 156
AoxI GGCC 1 cut(s) 316
ApaLI GTGCAC 1 cut(s) 513
ApeKI GCWGC 4 cut(s) 90, 266, 439, 544
ApoI RAATTY 1 cut(s) 303
Asp700I GAANNNNTTC 1 cut(s) 803
AspS9I GGNCC 1 cut(s) 316
BaeGI GKGCMC 2 cut(s) 517, 571
BbsI GAAGAC 2 cut(s) 54, 366
Bbv12I GWGCWC 1 cut(s) 517
BbvI GCAGC 4 cut(s) 77, 253, 451, 556
BccI CCATC 1 cut(s) 517
BceAI ACGGC 1 cut(s) 96
BcgI CGANNNNNNTGC 2 cut(s) 111, 145
BcoDI GTCTC 5 cut(s) 119, 190, 358, 660, 717
BfaI CTAG 4 cut(s) 44, 234, 614, 705
BfmI CTRYAG 2 cut(s) 368, 715
BglII AGATCT 1 cut(s) 82
BisI GCNGC 4 cut(s) 91, 267, 440, 545
BlsI GCNGC 4 cut(s) 92, 268, 441, 546
BmgT120I GGNCC 1 cut(s) 316
BmiI GGNNCC 1 cut(s) 317
BmsI GCATC 3 cut(s) 102, 425, 717
BoxI GACNNNNGTC 1 cut(s) 370
BpiI GAAGAC 2 cut(s) 54, 366
BplI GAGNNNNNCTC 2 cut(s) 270, 302
BpuEI CTTGAG 1 cut(s) 539
BsaAI YACGTR 2 cut(s) 455, 659
BsaI GGTCTC 2 cut(s) 660, 717
BsaJI CCNNGG 1 cut(s) 670
BsaXI ACNNNNNCTCC 8 cut(s) 313, 343, 518, 548, 714, 744, 788, 818
Bsc4I CCNNNNNNNGG 1 cut(s) 500
Bse1I ACTGG 1 cut(s) 808
BseDI CCNNGG 1 cut(s) 670
BseGI GGATG 1 cut(s) 631
BseLI CCNNNNNNNGG 1 cut(s) 500
BseMII CTCAG 2 cut(s) 301, 351
BseNI ACTGG 1 cut(s) 808
BseRI GAGGAG 2 cut(s) 94, 760
BseSI GKGCMC 2 cut(s) 517, 571
BseXI GCAGC 4 cut(s) 77, 253, 451, 556
BshFI GGCC 1 cut(s) 318
BsiHKAI GWGCWC 1 cut(s) 517
BsiSI CCGG 2 cut(s) 319, 443
BslI CCNNNNNNNGG 1 cut(s) 500
BsmAI GTCTC 5 cut(s) 119, 190, 358, 660, 717
BsmBI CGTCTC 2 cut(s) 119, 190
BsnI GGCC 1 cut(s) 318
Bso31I GGTCTC 2 cut(s) 660, 717
Bsp1286I GDGCHC 2 cut(s) 517, 571
Bsp143I GATC 3 cut(s) 39, 82, 148
BspANI GGCC 1 cut(s) 318
BspCNI CTCAG 2 cut(s) 300, 352
BspLI GGNNCC 1 cut(s) 317
BspPI GGATC 2 cut(s) 34, 156
BspQI GCTCTTC 1 cut(s) 271
BspTNI GGTCTC 2 cut(s) 660, 717
BsrI ACTGG 1 cut(s) 808
BssECI CCNNGG 1 cut(s) 670
BssMI GATC 3 cut(s) 39, 82, 148
BssT1I CCWWGG 1 cut(s) 670
Bst4CI ACNGT 1 cut(s) 372
Bst6I CTCTTC 2 cut(s) 122, 271
BstBAI YACGTR 2 cut(s) 455, 659
BstC8I GCNNGC 3 cut(s) 414, 513, 542
BstDEI CTNAG 3 cut(s) 287, 360, 572
BstF5I GGATG 1 cut(s) 631
BstKTI GATC 3 cut(s) 42, 85, 151
BstMAI GTCTC 5 cut(s) 119, 190, 358, 660, 717
BstMBI GATC 3 cut(s) 39, 82, 148
BstMWI GCNNNNNNNGC 1 cut(s) 422
BstPAI GACNNNNGTC 1 cut(s) 370
BstSFI CTRYAG 2 cut(s) 368, 715
BstSLI GKGCMC 2 cut(s) 517, 571
BstSNI TACGTA 1 cut(s) 659
BstV1I GCAGC 4 cut(s) 77, 253, 451, 556
BstV2I GAAGAC 2 cut(s) 54, 366
BstX2I RGATCY 3 cut(s) 39, 82, 148
BstYI RGATCY 3 cut(s) 39, 82, 148
BsuRI GGCC 1 cut(s) 318
BtgZI GCGATG 1 cut(s) 147
BtsCI GGATG 1 cut(s) 631
Cac8I GCNNGC 3 cut(s) 414, 513, 542
Cfr13I GGNCC 1 cut(s) 316
Csp6I GTAC 2 cut(s) 76, 452
CspCI CAANNNNNGTGG 2 cut(s) 700, 735
CviAII CATG 4 cut(s) 164, 229, 553, 622
CviJI RGCY 9 cut(s) 28, 266, 281, 318, 359, 425, 442, 613, 802
CviKI_1 RGCY 9 cut(s) 28, 266, 281, 318, 359, 425, 442, 613, 802
CviQI GTAC 2 cut(s) 76, 452
DdeI CTNAG 3 cut(s) 287, 360, 572
DpnI GATC 3 cut(s) 41, 84, 150
DpnII GATC 3 cut(s) 39, 82, 148
Eam1104I CTCTTC 2 cut(s) 122, 271
EarI CTCTTC 2 cut(s) 122, 271
Eco105I TACGTA 1 cut(s) 659
Eco130I CCWWGG 1 cut(s) 670
Eco31I GGTCTC 2 cut(s) 660, 717
EcoT14I CCWWGG 1 cut(s) 670
ErhI CCWWGG 1 cut(s) 670
Esp3I CGTCTC 2 cut(s) 119, 190
FaeI CATG 4 cut(s) 167, 232, 556, 625
FatI CATG 4 cut(s) 163, 228, 552, 621
FblI GTMKAC 1 cut(s) 460
Fnu4HI GCNGC 4 cut(s) 91, 267, 440, 545
FokI GGATG 1 cut(s) 618
Fsp4HI GCNGC 4 cut(s) 91, 267, 440, 545
FspBI CTAG 4 cut(s) 44, 234, 614, 705
GluI GCNGC 4 cut(s) 91, 267, 440, 545
HaeIII GGCC 1 cut(s) 318
HapII CCGG 2 cut(s) 319, 443
Hin1II CATG 4 cut(s) 167, 232, 556, 625
HinfI GANTC 5 cut(s) 137, 206, 325, 617, 815
HpaII CCGG 2 cut(s) 319, 443
Hpy166II GTNNAC 2 cut(s) 461, 515
Hpy188I TCNGA 7 cut(s) 122, 205, 310, 352, 394, 814, 820
Hpy188III TCNNGA 2 cut(s) 289, 329
Hpy8I GTNNAC 2 cut(s) 461, 515
Hpy99I CGWCG 2 cut(s) 26, 356
HpyAV CCTTC 2 cut(s) 244, 286
HpyCH4III ACNGT 1 cut(s) 372
HpyCH4IV ACGT 3 cut(s) 432, 454, 658
HpyCH4V TGCA 5 cut(s) 8, 93, 385, 515, 540
HpyF10VI GCNNNNNNNGC 1 cut(s) 422
HpyF3I CTNAG 3 cut(s) 287, 360, 572
HpySE526I ACGT 3 cut(s) 432, 454, 658
Hsp92II CATG 4 cut(s) 167, 232, 556, 625
Kzo9I GATC 3 cut(s) 39, 82, 148
LguI GCTCTTC 1 cut(s) 271
LpnPI CCDG 9 cut(s) 130, 142, 274, 332, 456, 507, 789, 799, 821
Lsp1109I GCAGC 4 cut(s) 77, 253, 451, 556
LweI GCATC 3 cut(s) 102, 425, 717
MaeI CTAG 4 cut(s) 44, 234, 614, 705
MaeII ACGT 3 cut(s) 432, 454, 658
MalI GATC 3 cut(s) 41, 84, 150
MboI GATC 3 cut(s) 39, 82, 148
MboII GAAGA 9 cut(s) 54, 109, 143, 186, 189, 192, 288, 366, 369
MflI RGATCY 3 cut(s) 39, 82, 148
MhlI GDGCHC 2 cut(s) 517, 571
MluCI AATT 4 cut(s) 260, 303, 332, 386
MmeI TCCRAC 1 cut(s) 375
MroXI GAANNNNTTC 1 cut(s) 803
MslI CAYNNNNRTG 1 cut(s) 591
MspI CCGG 2 cut(s) 319, 443
MwoI GCNNNNNNNGC 1 cut(s) 422
NdeII GATC 3 cut(s) 39, 82, 148
NlaIII CATG 4 cut(s) 167, 232, 556, 625
NlaIV GGNNCC 1 cut(s) 317
PciSI GCTCTTC 1 cut(s) 271
PcsI WCGNNNNNNNCGW 2 cut(s) 18, 71
PdmI GAANNNNTTC 1 cut(s) 803
PfeI GAWTC 5 cut(s) 137, 206, 325, 617, 815
PkrI GCNGC 4 cut(s) 92, 268, 441, 546
Ppu21I YACGTR 2 cut(s) 455, 659
PshAI GACNNNNGTC 1 cut(s) 370
Psp1406I AACGTT 1 cut(s) 432
PspN4I GGNNCC 1 cut(s) 317
PspPI GGNCC 1 cut(s) 316
PsuI RGATCY 3 cut(s) 39, 82, 148
RsaI GTAC 2 cut(s) 77, 453
RsaNI GTAC 2 cut(s) 76, 452
RseI CAYNNNNRTG 1 cut(s) 591
SapI GCTCTTC 1 cut(s) 271
SatI GCNGC 4 cut(s) 91, 267, 440, 545
Sau3AI GATC 3 cut(s) 39, 82, 148
Sau96I GGNCC 1 cut(s) 316
SduI GDGCHC 2 cut(s) 517, 571
SfaNI GCATC 3 cut(s) 102, 425, 717
SfcI CTRYAG 2 cut(s) 368, 715
SmiMI CAYNNNNRTG 1 cut(s) 591
SmlI CTYRAG 1 cut(s) 518
SmoI CTYRAG 1 cut(s) 518
SnaBI TACGTA 1 cut(s) 659
Sse9I AATT 4 cut(s) 260, 303, 332, 386
SspMI CTAG 4 cut(s) 44, 234, 614, 705
StyI CCWWGG 1 cut(s) 670
TaaI ACNGT 1 cut(s) 372
TaiI ACGT 3 cut(s) 435, 457, 661
TaqI TCGA 3 cut(s) 65, 505, 653
TasI AATT 4 cut(s) 260, 303, 332, 386
TfiI GAWTC 5 cut(s) 137, 206, 325, 617, 815
TseI GCWGC 4 cut(s) 90, 266, 439, 544
TspDTI ATGAA 2 cut(s) 545, 638
TspGWI ACGGA 1 cut(s) 809
VneI GTGCAC 1 cut(s) 513
XapI RAATTY 1 cut(s) 303
XcmI CCANNNNNNNNNTGG 2 cut(s) 677, 734
XmiI GTMKAC 1 cut(s) 460
XmnI GAANNNNTTC 1 cut(s) 803
XspI CTAG 4 cut(s) 44, 234, 614, 705
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.