Rh3AG323200

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0006260
Physical Location & Seq
Forward (+)
45289053 .. 45292742
3690 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG323200.1

Sequence Viewer

Length: 594 bp
ATGTCAGTTCTCCCAGACGAGCTCTGGAGGCGAGTCTTCGAAATCGGCGGGTTCAGCTACAAAGATCTCTGCTGTGTATCTATCACCTGCAAGCGCTTCCGCCGATTATCCGATGAGGACCATCTCTGGTCGCACCTCCTCTCCTCGGATTTCCCCCTTGTCGCTTCTCATCCCTCTTCTTCCTCAGTCAGCTCTAAATCTCTCTATAAACTCAGGTTTGAGAGAGATAGGGATAAGAAAATAGCGGCCCATCAACGAGCGCTGTTGCGGAAGGAGAGCCAGATTATTGAACATTTAAGAAAGCTCCGGGACATAGAGAGCCGATTGGCCCAAGAGACCCACAAAATGCAAGGGACTCTTGTTGACCTCTCCAATTTTCACCAGGTCAGGCAAGCTTCACTAGCATTGAATGTCTGGCAGCCAGAGATAATTAGGGGCCGACAAAAACAAATAGTGGAGCAATGTGTTGTATCGACTGAGTCTCGGCTCCATGCCCTTGAAATGGAGCTTAGGCTGTGCAAACAGCAGATTTCAGGGTTAGAAAAGGCGTATGTAAGTTTCCTGATCTTGCTTTGCATTGTCAAGAAGGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like

Protein Analysis

197

Amino Acids

22.94

Weight (kDa)

9.43

Isoelectric Point (pI)

53.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 2 - 46 2.6e-09 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 95
Acc36I ACCTGC 1 cut(s) 95
AciI CCGC 4 cut(s) 48, 100, 245, 268
AfeI AGCGCT 2 cut(s) 95, 261
AfiI CCNNNNNNNGG 2 cut(s) 145, 502
AgsI TTSAA 3 cut(s) 290, 409, 500
AjnI CCWGG 1 cut(s) 381
AluBI AGCT 6 cut(s) 22, 57, 192, 304, 395, 508
AluI AGCT 6 cut(s) 22, 57, 192, 304, 395, 508
Alw21I GWGCWC 1 cut(s) 24
Alw26I GTCTC 2 cut(s) 329, 486
Aor51HI AGCGCT 2 cut(s) 95, 261
AoxI GGCC 3 cut(s) 246, 327, 436
ApeKI GCWGC 1 cut(s) 418
AspLEI GCGC 2 cut(s) 96, 262
AspS9I GGNCC 4 cut(s) 118, 247, 328, 436
AsuC2I CCSGG 1 cut(s) 308
AsuHPI GGTGA 2 cut(s) 76, 371
AsuII TTCGAA 1 cut(s) 39
AvaII GGWCC 1 cut(s) 118
BanII GRGCYC 1 cut(s) 24
BbsI GAAGAC 1 cut(s) 28
Bbv12I GWGCWC 1 cut(s) 24
BbvI GCAGC 1 cut(s) 430
BccI CCATC 2 cut(s) 129, 258
BciT130I CCWGG 1 cut(s) 383
BcnI CCSGG 1 cut(s) 308
BcoDI GTCTC 2 cut(s) 329, 486
BfaI CTAG 2 cut(s) 401, 592
BfoI RGCGCY 2 cut(s) 97, 263
BfuAI ACCTGC 1 cut(s) 95
BglII AGATCT 1 cut(s) 64
BisI GCNGC 2 cut(s) 246, 419
BlsI GCNGC 2 cut(s) 247, 420
Bme1390I CCNGG 2 cut(s) 308, 383
Bme18I GGWCC 1 cut(s) 118
BmgT120I GGNCC 4 cut(s) 118, 247, 328, 436
BmiI GGNNCC 2 cut(s) 437, 488
BmrFI CCNGG 2 cut(s) 308, 383
BpiI GAAGAC 1 cut(s) 28
BpmI CTGGAG 1 cut(s) 46
Bpu10I CCTNAGC 1 cut(s) 509
Bpu14I TTCGAA 1 cut(s) 39
BpuMI CCSGG 1 cut(s) 308
BsaI GGTCTC 1 cut(s) 329
BsaJI CCNNGG 1 cut(s) 144
BsaXI ACNNNNNCTCC 2 cut(s) 125, 155
Bsc4I CCNNNNNNNGG 2 cut(s) 145, 502
Bse3DI GCAATG 1 cut(s) 467
BseBI CCWGG 1 cut(s) 383
BseDI CCNNGG 1 cut(s) 144
BseGI GGATG 1 cut(s) 169
BseLI CCNNNNNNNGG 2 cut(s) 145, 502
BseMI GCAATG 1 cut(s) 467
BseMII CTCAG 3 cut(s) 198, 226, 468
BseRI GAGGAG 2 cut(s) 128, 133
BseXI GCAGC 1 cut(s) 430
BshFI GGCC 3 cut(s) 248, 329, 438
BsiHKAI GWGCWC 1 cut(s) 24
BsiSI CCGG 1 cut(s) 307
BslFI GGGAC 2 cut(s) 323, 367
BslI CCNNNNNNNGG 2 cut(s) 145, 502
BsmAI GTCTC 2 cut(s) 329, 486
BsmFI GGGAC 2 cut(s) 323, 367
BsnI GGCC 3 cut(s) 248, 329, 438
Bso31I GGTCTC 1 cut(s) 329
Bsp119I TTCGAA 1 cut(s) 39
Bsp1286I GDGCHC 1 cut(s) 24
Bsp143I GATC 2 cut(s) 64, 564
BspACI CCGC 4 cut(s) 48, 100, 245, 268
BspANI GGCC 3 cut(s) 248, 329, 438
BspCNI CTCAG 3 cut(s) 197, 225, 469
BspLI GGNNCC 2 cut(s) 437, 488
BspMI ACCTGC 1 cut(s) 95
BspT104I TTCGAA 1 cut(s) 39
BspTNI GGTCTC 1 cut(s) 329
BsrDI GCAATG 1 cut(s) 467
BssECI CCNNGG 1 cut(s) 144
BssMI GATC 2 cut(s) 64, 564
Bst2UI CCWGG 1 cut(s) 383
Bst6I CTCTTC 1 cut(s) 181
BstBI TTCGAA 1 cut(s) 39
BstC8I GCNNGC 2 cut(s) 92, 393
BstDEI CTNAG 4 cut(s) 184, 212, 477, 509
BstF5I GGATG 1 cut(s) 169
BstH2I RGCGCY 2 cut(s) 97, 263
BstHHI GCGC 2 cut(s) 96, 262
BstKTI GATC 2 cut(s) 67, 567
BstMAI GTCTC 2 cut(s) 329, 486
BstMBI GATC 2 cut(s) 64, 564
BstMWI GCNNNNNNNGC 3 cut(s) 28, 54, 401
BstNI CCWGG 1 cut(s) 383
BstSCI CCNGG 2 cut(s) 306, 381
BstV1I GCAGC 1 cut(s) 430
BstV2I GAAGAC 1 cut(s) 28
BstX2I RGATCY 1 cut(s) 64
BstYI RGATCY 1 cut(s) 64
BsuRI GGCC 3 cut(s) 248, 329, 438
BtsCI GGATG 1 cut(s) 169
BveI ACCTGC 1 cut(s) 95
Cac8I GCNNGC 2 cut(s) 92, 393
CfoI GCGC 2 cut(s) 96, 262
Cfr13I GGNCC 4 cut(s) 118, 247, 328, 436
CsiI ACCWGGT 1 cut(s) 381
CviAII CATG 1 cut(s) 491
DdeI CTNAG 4 cut(s) 184, 212, 477, 509
DpnI GATC 2 cut(s) 66, 566
DpnII GATC 2 cut(s) 64, 564
Eam1104I CTCTTC 1 cut(s) 181
EarI CTCTTC 1 cut(s) 181
EciI GGCGGA 1 cut(s) 89
Ecl136II GAGCTC 1 cut(s) 22
Eco24I GRGCYC 1 cut(s) 24
Eco31I GGTCTC 1 cut(s) 329
Eco47I GGWCC 1 cut(s) 118
Eco47III AGCGCT 2 cut(s) 95, 261
Eco53kI GAGCTC 1 cut(s) 22
EcoICRI GAGCTC 1 cut(s) 22
EcoRII CCWGG 1 cut(s) 381
EcoT38I GRGCYC 1 cut(s) 24
FaeI CATG 1 cut(s) 494
FaiI YATR 4 cut(s) 207, 314, 492, 552
FalI AAGNNNNNCTT 2 cut(s) 342, 374
FaqI GGGAC 2 cut(s) 323, 367
FatI CATG 1 cut(s) 490
FauI CCCGC 1 cut(s) 41
Fnu4HI GCNGC 2 cut(s) 246, 419
FokI GGATG 1 cut(s) 156
FriOI GRGCYC 1 cut(s) 24
Fsp4HI GCNGC 2 cut(s) 246, 419
FspBI CTAG 2 cut(s) 401, 592
GlaI GCGC 2 cut(s) 95, 261
GluI GCNGC 2 cut(s) 246, 419
GsuI CTGGAG 1 cut(s) 46
HaeII RGCGCY 2 cut(s) 97, 263
HaeIII GGCC 3 cut(s) 248, 329, 438
HapII CCGG 1 cut(s) 307
HhaI GCGC 2 cut(s) 96, 262
Hin1II CATG 1 cut(s) 494
Hin6I GCGC 2 cut(s) 94, 260
HinP1I GCGC 2 cut(s) 94, 260
HincII GTYRAC 1 cut(s) 364
HindII GTYRAC 1 cut(s) 364
HindIII AAGCTT 1 cut(s) 393
HinfI GANTC 3 cut(s) 33, 355, 479
HpaII CCGG 1 cut(s) 307
HphI GGTGA 2 cut(s) 76, 371
Hpy166II GTNNAC 1 cut(s) 364
Hpy188I TCNGA 2 cut(s) 112, 148
Hpy188III TCNNGA 3 cut(s) 25, 562, 583
Hpy8I GTNNAC 1 cut(s) 364
HpyAV CCTTC 2 cut(s) 265, 580
HpyCH4V TGCA 4 cut(s) 90, 349, 519, 576
HpyF10VI GCNNNNNNNGC 3 cut(s) 28, 54, 401
HpyF3I CTNAG 4 cut(s) 184, 212, 477, 509
Hsp92II CATG 1 cut(s) 494
HspAI GCGC 2 cut(s) 94, 260
Kzo9I GATC 2 cut(s) 64, 564
LmnI GCTCC 4 cut(s) 309, 457, 492, 505
Lsp1109I GCAGC 1 cut(s) 430
MabI ACCWGGT 1 cut(s) 381
MaeI CTAG 2 cut(s) 401, 592
MalI GATC 2 cut(s) 66, 566
MboI GATC 2 cut(s) 64, 564
MboII GAAGA 3 cut(s) 28, 168, 171
MflI RGATCY 1 cut(s) 64
MhlI GDGCHC 1 cut(s) 24
MluCI AATT 2 cut(s) 373, 429
MlyI GAGTC 3 cut(s) 42, 349, 488
MnlI CCTC 8 cut(s) 21, 109, 146, 149, 154, 184, 193, 377
MseI TTAA 1 cut(s) 296
MspI CCGG 1 cut(s) 307
MspR9I CCNGG 2 cut(s) 308, 383
MvaI CCWGG 1 cut(s) 383
MwoI GCNNNNNNNGC 3 cut(s) 28, 54, 401
NciI CCSGG 1 cut(s) 308
NdeII GATC 2 cut(s) 64, 564
NlaIII CATG 1 cut(s) 494
NlaIV GGNNCC 2 cut(s) 437, 488
NmeAIII GCCGAG 1 cut(s) 463
NspV TTCGAA 1 cut(s) 39
PaqCI CACCTGC 1 cut(s) 95
PflFI GACNNNGTC 1 cut(s) 478
PfoI TCCNGGA 1 cut(s) 306
PkrI GCNGC 2 cut(s) 247, 420
PleI GAGTC 3 cut(s) 41, 349, 487
PpsI GAGTC 3 cut(s) 41, 349, 487
Psp124BI GAGCTC 1 cut(s) 24
Psp6I CCWGG 1 cut(s) 381
PspGI CCWGG 1 cut(s) 381
PspN4I GGNNCC 2 cut(s) 437, 488
PspPI GGNCC 4 cut(s) 118, 247, 328, 436
PsuI RGATCY 1 cut(s) 64
PsyI GACNNNGTC 1 cut(s) 478
SacI GAGCTC 1 cut(s) 24
SaqAI TTAA 1 cut(s) 296
SatI GCNGC 2 cut(s) 246, 419
Sau3AI GATC 2 cut(s) 64, 564
Sau96I GGNCC 4 cut(s) 118, 247, 328, 436
SchI GAGTC 3 cut(s) 42, 349, 488
ScrFI CCNGG 2 cut(s) 308, 383
SduI GDGCHC 1 cut(s) 24
SexAI ACCWGGT 1 cut(s) 381
SfuI TTCGAA 1 cut(s) 39
SinI GGWCC 1 cut(s) 118
Sse9I AATT 2 cut(s) 373, 429
SsiI CCGC 4 cut(s) 48, 100, 245, 268
SspMI CTAG 2 cut(s) 401, 592
SstI GAGCTC 1 cut(s) 24
StyD4I CCNGG 2 cut(s) 306, 381
TaqI TCGA 2 cut(s) 39, 473
TasI AATT 2 cut(s) 373, 429
TauI GCSGC 1 cut(s) 248
Tru1I TTAA 1 cut(s) 296
Tru9I TTAA 1 cut(s) 296
TseI GCWGC 1 cut(s) 418
Tth111I GACNNNGTC 1 cut(s) 478
VpaK11BI GGWCC 1 cut(s) 118
XcmI CCANNNNNNNNNTGG 1 cut(s) 21
XspI CTAG 2 cut(s) 401, 592
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.