Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0006260

Physical Location & Seq

Genomic Coordinates Reverse (-)

978103 .. 980900

Gene Structure 2798 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g01160.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGTCAGCTCTCCCGGATGAGTTGTGGAGGCGAATTCTAGAAATCGGCGTTCAAAGCGGCAGTTTCAGCTACAAGGACCTCTGCCGTATATCAATCTCCTCTGCGCGCCTCCGCCGCTTATCCGACGAAGACTCCCTATGGTCCCACCTCCTCTCCTCCGATTTGCCTACTTCTTCTTCCTCGATTACCTCCCCAAATCCATCAACCTCTAAATCCCTCTACAAAATCAGGTTTGAGAGAGAGAGGGATAAGAAAATGGCGGCGCATCGGAGGGCGGTTTTGAGGAAGGAGAGTCAGGTTGTAGAACGGTCTATGAAGCTCCGAGAGATGGAGGCTCGATTGGCCGAAGAGACTCAGAAAATGCAAGCAGCACTTACCGAGCTCTCAAATTTGAGCAGGATTAGGCAAGCTTCAGTTGCATTGAATGTGTGGCTGCCAGAGATCATCCGGGGTAGACAAAAACAAATAGTGGAGCAATGTGTAGTACCTGTTGAGTCTCGGTTCCATTCCCTTGAAATGGAGCTCAAGCTCTGCAAGCAGCACATTTTAGGGTTAGAAAAAGCCCATAAAGATGAGAAACGAAGGCTTGCTTTGGTGGAAGAAGAGCTGCAGTCAATGAGATATCACCCTTTAAGAAATCATGAGCAAATCAATTGCAGGGACATTGAAAATAACATCAAGAGAAAAAAGTTAAAAAGATGTCATGGTCAGGGGAGAAAACCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box-like

Protein Analysis

242

Amino Acids

28.15

Weight (kDa)

9.87

Isoelectric Point (pI)

72.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006260)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08710 AT1G08710
fragaria_vesca	FvH4_3g02594 FvH4_5g39040
malus_domestica	MD12G1014000.v1.1
prunus_persica	Prupe.7G018500_v2.0.a1 Prupe.7G018500_v2.0.a1 Prupe.7G018500_v2.0.a1 Prupe.7G018500_v2.0.a1 Prupe.7G018500_v2.0.a1 Prupe.7G018500_v2.0.a1 Prupe.7G018500_v2.0.a1 Prupe.7G018500_v2.0.a1 Prupe.7G018500_v2.0.a1
pyrus_communis	pycom12g01160
rosa_chinensis	RchiOBHm_Chr3g0495701
rosa_laevigata	RLG00000022593
rosa_multiflora	Rmu_co8418867.1_g000001 Rmu_sc0002977.1_g000008 Rmu_sc0005747.1_g000002
rosa_roxburghii	Rroxscaffold_6G00390090
rosa_rugosa	Rorug03G0275600
rosa_samantha	Rh3AG323200 Rh3BG358800 Rh3CG355400 Rh3DG358600
rosa_wichuraiana	Rw3G028250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	454
AccII	CGCG	1 cut(s)	106
AciI	CCGC	5 cut(s)	57, 112, 115, 260, 275
AcoI	YGGCCR	1 cut(s)	342
AcsI	RAATTY	2 cut(s)	33, 388
AcuI	CTGAAG	1 cut(s)	396
AfaI	GTAC	1 cut(s)	486
AfiI	CCNNNNNNNGG	2 cut(s)	328, 517
AgsI	TTSAA	4 cut(s)	53, 424, 515, 668
AluBI	AGCT	8 cut(s)	8, 69, 319, 382, 410, 523, 529, 607
AluI	AGCT	8 cut(s)	8, 69, 319, 382, 410, 523, 529, 607
Alw21I	GWGCWC	2 cut(s)	384, 525
Alw26I	GTCTC	2 cut(s)	344, 501
AoxI	GGCC	1 cut(s)	342
ApeKI	GCWGC	4 cut(s)	368, 433, 538, 607
ApoI	RAATTY	2 cut(s)	33, 388
AspLEI	GCGC	3 cut(s)	106, 108, 265
AspS9I	GGNCC	2 cut(s)	76, 141
AsuC2I	CCSGG	2 cut(s)	14, 449
AsuHPI	GGTGA	1 cut(s)	617
AvaII	GGWCC	2 cut(s)	76, 141
BanII	GRGCYC	2 cut(s)	384, 525
BbsI	GAAGAC	1 cut(s)	135
Bbv12I	GWGCWC	2 cut(s)	384, 525
BbvI	GCAGC	4 cut(s)	380, 420, 550, 594
BccI	CCATC	2 cut(s)	208, 322
BceAI	ACGGC	1 cut(s)	69
BcnI	CCSGG	2 cut(s)	14, 449
BcoDI	GTCTC	2 cut(s)	344, 501
BfaI	CTAG	1 cut(s)	38
BfmI	CTRYAG	1 cut(s)	608
BisI	GCNGC	7 cut(s)	58, 115, 261, 369, 434, 539, 608
BlsI	GCNGC	7 cut(s)	59, 116, 262, 370, 435, 540, 609
Bme1390I	CCNGG	2 cut(s)	14, 449
Bme18I	GGWCC	2 cut(s)	76, 141
BmgT120I	GGNCC	2 cut(s)	76, 141
BmiI	GGNNCC	2 cut(s)	143, 503
BmrFI	CCNGG	2 cut(s)	14, 449
BmsI	GCATC	1 cut(s)	274
BpiI	GAAGAC	1 cut(s)	135
BpuEI	CTTGAG	1 cut(s)	509
BpuMI	CCSGG	2 cut(s)	14, 449
BsaJI	CCNNGG	1 cut(s)	448
BsaXI	ACNNNNNCTCC	4 cut(s)	116, 137, 146, 167
Bsc4I	CCNNNNNNNGG	2 cut(s)	328, 517
Bse3DI	GCAATG	1 cut(s)	482
BseDI	CCNNGG	1 cut(s)	448
BseGI	GGATG	2 cut(s)	22, 444
BseLI	CCNNNNNNNGG	2 cut(s)	328, 517
BseMI	GCAATG	1 cut(s)	482
BseMII	CTCAG	1 cut(s)	368
BsePI	GCGCGC	1 cut(s)	104
BseRI	GAGGAG	3 cut(s)	88, 140, 145
BseXI	GCAGC	4 cut(s)	380, 420, 550, 594
Bsh1236I	CGCG	1 cut(s)	106
BshFI	GGCC	1 cut(s)	344
BsiHKAI	GWGCWC	2 cut(s)	384, 525
BsiSI	CCGG	2 cut(s)	14, 448
BslFI	GGGAC	2 cut(s)	127, 674
BslI	CCNNNNNNNGG	2 cut(s)	328, 517
BsmAI	GTCTC	2 cut(s)	344, 501
BsmFI	GGGAC	2 cut(s)	127, 674
BsnI	GGCC	1 cut(s)	344
Bsp1286I	GDGCHC	2 cut(s)	384, 525
Bsp143I	GATC	1 cut(s)	441
BspACI	CCGC	5 cut(s)	57, 112, 115, 260, 275
BspANI	GGCC	1 cut(s)	344
BspCNI	CTCAG	1 cut(s)	367
BspFNI	CGCG	1 cut(s)	106
BspHI	TCATGA	1 cut(s)	640
BspLI	GGNNCC	2 cut(s)	143, 503
BspMAI	CTGCAG	1 cut(s)	612
BspQI	GCTCTTC	1 cut(s)	597
BsrDI	GCAATG	1 cut(s)	482
BssECI	CCNNGG	1 cut(s)	448
BssHII	GCGCGC	1 cut(s)	104
BssMI	GATC	1 cut(s)	441
Bst4CI	ACNGT	1 cut(s)	309
Bst6I	CTCTTC	2 cut(s)	342, 597
BstC8I	GCNNGC	5 cut(s)	106, 366, 408, 536, 588
BstDEI	CTNAG	2 cut(s)	354, 723
BstF5I	GGATG	2 cut(s)	22, 444
BstFNI	CGCG	1 cut(s)	106
BstHHI	GCGC	3 cut(s)	106, 108, 265
BstKTI	GATC	1 cut(s)	444
BstMAI	GTCTC	2 cut(s)	344, 501
BstMBI	GATC	1 cut(s)	441
BstMWI	GCNNNNNNNGC	6 cut(s)	54, 66, 114, 341, 416, 535
BstSCI	CCNGG	2 cut(s)	12, 447
BstSFI	CTRYAG	1 cut(s)	608
BstUI	CGCG	1 cut(s)	106
BstV1I	GCAGC	4 cut(s)	380, 420, 550, 594
BstV2I	GAAGAC	1 cut(s)	135
BsuRI	GGCC	1 cut(s)	344
BtsCI	GGATG	2 cut(s)	22, 444
Cac8I	GCNNGC	5 cut(s)	106, 366, 408, 536, 588
CciI	TCATGA	1 cut(s)	640
CfoI	GCGC	3 cut(s)	106, 108, 265
Cfr13I	GGNCC	2 cut(s)	76, 141
Csp6I	GTAC	1 cut(s)	485
CviAII	CATG	2 cut(s)	641, 704
CviQI	GTAC	1 cut(s)	485
DdeI	CTNAG	2 cut(s)	354, 723
DpnI	GATC	1 cut(s)	443
DpnII	GATC	1 cut(s)	441
EaeI	YGGCCR	1 cut(s)	342
Eam1104I	CTCTTC	2 cut(s)	342, 597
EarI	CTCTTC	2 cut(s)	342, 597
EciI	GGCGGA	1 cut(s)	101
Ecl136II	GAGCTC	2 cut(s)	382, 523
Eco24I	GRGCYC	2 cut(s)	384, 525
Eco32I	GATATC	1 cut(s)	623
Eco47I	GGWCC	2 cut(s)	76, 141
Eco53kI	GAGCTC	2 cut(s)	382, 523
Eco57I	CTGAAG	1 cut(s)	396
EcoICRI	GAGCTC	2 cut(s)	382, 523
EcoO109I	RGGNCCY	1 cut(s)	76
EcoRI	GAATTC	1 cut(s)	33
EcoRV	GATATC	1 cut(s)	623
EcoT38I	GRGCYC	2 cut(s)	384, 525
FaeI	CATG	2 cut(s)	644, 707
FaiI	YATR	6 cut(s)	89, 139, 314, 567, 642, 705
FalI	AAGNNNNNCTT	4 cut(s)	357, 389, 574, 606
FaqI	GGGAC	2 cut(s)	127, 674
FatI	CATG	2 cut(s)	640, 703
FblI	GTMKAC	1 cut(s)	454
Fnu4HI	GCNGC	7 cut(s)	58, 115, 261, 369, 434, 539, 608
FokI	GGATG	2 cut(s)	29, 431
FriOI	GRGCYC	2 cut(s)	384, 525
Fsp4HI	GCNGC	7 cut(s)	58, 115, 261, 369, 434, 539, 608
FspBI	CTAG	1 cut(s)	38
GlaI	GCGC	3 cut(s)	105, 107, 264
GluI	GCNGC	7 cut(s)	58, 115, 261, 369, 434, 539, 608
HaeIII	GGCC	1 cut(s)	344
HapII	CCGG	2 cut(s)	14, 448
HhaI	GCGC	3 cut(s)	106, 108, 265
Hin1II	CATG	2 cut(s)	644, 707
Hin6I	GCGC	3 cut(s)	104, 106, 263
HinP1I	GCGC	3 cut(s)	104, 106, 263
HindIII	AAGCTT	1 cut(s)	408
HinfI	GANTC	4 cut(s)	131, 292, 352, 494
HpaII	CCGG	2 cut(s)	14, 448
HphI	GGTGA	1 cut(s)	617
Hpy166II	GTNNAC	1 cut(s)	455
Hpy188I	TCNGA	5 cut(s)	124, 160, 270, 323, 357
Hpy188III	TCNNGA	3 cut(s)	38, 641, 679
Hpy8I	GTNNAC	1 cut(s)	455
Hpy99I	CGWCG	1 cut(s)	128
HpyAV	CCTTC	2 cut(s)	280, 576
HpyCH4III	ACNGT	1 cut(s)	309
HpyCH4V	TGCA	5 cut(s)	364, 419, 534, 610, 657
HpyF10VI	GCNNNNNNNGC	6 cut(s)	54, 66, 114, 341, 416, 535
HpyF3I	CTNAG	2 cut(s)	354, 723
Hsp92II	CATG	2 cut(s)	644, 707
HspAI	GCGC	3 cut(s)	104, 106, 263
Kzo9I	GATC	1 cut(s)	441
LguI	GCTCTTC	1 cut(s)	597
LmnI	GCTCC	3 cut(s)	324, 472, 520
LpnPI	CCDG	9 cut(s)	27, 214, 281, 382, 450, 461, 501, 643, 695
Lsp1109I	GCAGC	4 cut(s)	380, 420, 550, 594
LweI	GCATC	1 cut(s)	274
MaeI	CTAG	1 cut(s)	38
MalI	GATC	1 cut(s)	443
MboI	GATC	1 cut(s)	441
MboII	GAAGA	6 cut(s)	140, 165, 168, 359, 611, 614
MfeI	CAATTG	1 cut(s)	652
MhlI	GDGCHC	2 cut(s)	384, 525
MluCI	AATT	3 cut(s)	33, 388, 652
MlyI	GAGTC	4 cut(s)	125, 301, 346, 503
MmeI	TCCRAC	1 cut(s)	147
MseI	TTAA	2 cut(s)	632, 692
MslI	CAYNNNNRTG	1 cut(s)	570
MspI	CCGG	2 cut(s)	14, 448
MspR9I	CCNGG	2 cut(s)	14, 449
MunI	CAATTG	1 cut(s)	652
MvnI	CGCG	1 cut(s)	106
MwoI	GCNNNNNNNGC	6 cut(s)	54, 66, 114, 341, 416, 535
NciI	CCSGG	2 cut(s)	14, 449
NdeII	GATC	1 cut(s)	441
NlaIII	CATG	2 cut(s)	644, 707
NlaIV	GGNNCC	2 cut(s)	143, 503
PagI	TCATGA	1 cut(s)	640
PauI	GCGCGC	1 cut(s)	104
PciSI	GCTCTTC	1 cut(s)	597
PfoI	TCCNGGA	1 cut(s)	12
PkrI	GCNGC	7 cut(s)	59, 116, 262, 370, 435, 540, 609
PleI	GAGTC	4 cut(s)	125, 300, 346, 502
PpsI	GAGTC	4 cut(s)	125, 300, 346, 502
PpuMI	RGGWCCY	1 cut(s)	76
Psp124BI	GAGCTC	2 cut(s)	384, 525
Psp5II	RGGWCCY	1 cut(s)	76
PspN4I	GGNNCC	2 cut(s)	143, 503
PspPI	GGNCC	2 cut(s)	76, 141
PspPPI	RGGWCCY	1 cut(s)	76
PstI	CTGCAG	1 cut(s)	612
PteI	GCGCGC	1 cut(s)	104
RsaI	GTAC	1 cut(s)	486
RsaNI	GTAC	1 cut(s)	485
RseI	CAYNNNNRTG	1 cut(s)	570
SacI	GAGCTC	2 cut(s)	384, 525
SapI	GCTCTTC	1 cut(s)	597
SaqAI	TTAA	2 cut(s)	632, 692
SatI	GCNGC	7 cut(s)	58, 115, 261, 369, 434, 539, 608
Sau3AI	GATC	1 cut(s)	441
Sau96I	GGNCC	2 cut(s)	76, 141
SchI	GAGTC	4 cut(s)	125, 301, 346, 503
ScrFI	CCNGG	2 cut(s)	14, 449
SduI	GDGCHC	2 cut(s)	384, 525
SfaNI	GCATC	1 cut(s)	274
SfcI	CTRYAG	1 cut(s)	608
SinI	GGWCC	2 cut(s)	76, 141
SmiMI	CAYNNNNRTG	1 cut(s)	570
SmlI	CTYRAG	1 cut(s)	524
SmoI	CTYRAG	1 cut(s)	524
Sse9I	AATT	3 cut(s)	33, 388, 652
SsiI	CCGC	5 cut(s)	57, 112, 115, 260, 275
SspMI	CTAG	1 cut(s)	38
SstI	GAGCTC	2 cut(s)	384, 525
StyD4I	CCNGG	2 cut(s)	12, 447
TaaI	ACNGT	1 cut(s)	309
TaqI	TCGA	2 cut(s)	182, 337
TasI	AATT	3 cut(s)	33, 388, 652
TauI	GCSGC	3 cut(s)	60, 117, 263
Tru1I	TTAA	2 cut(s)	632, 692
Tru9I	TTAA	2 cut(s)	632, 692
TseI	GCWGC	4 cut(s)	368, 433, 538, 607
TspDTI	ATGAA	1 cut(s)	329
VpaK11BI	GGWCC	2 cut(s)	76, 141
XapI	RAATTY	2 cut(s)	33, 388
XbaI	TCTAGA	1 cut(s)	37
XmiI	GTMKAC	1 cut(s)	454
XspI	CTAG	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.