FvH4_5g39040

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0006260
Physical Location & Seq
Reverse (-)
28832142 .. 28832864
723 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g39040.t1

Sequence Viewer

Length: 723 bp
ATGTCAGCTCTTCTTCTCCCAGACGAGCTGTGGAGGCGAGTCCTAGAAATCGGGGGGTTGAGCTACAAAGACCTCTGCTGTTTATCAGTCACCTGCAGACGCCTCCACCGATTATCCGATGAGGATCATCTCTGGTCCCACCGCCTCTCCTCCGATTTCCCTCCTCCTCTTAATACCTCCTCCTCATCAGTTTCCTCCTCTAAATCTCTCTATAAACTCAGATTTGAGAGAGATCGGGACAAGAGAAAGGCGACCCATCAAAGAGCGGTGTTGAGGAAGGAGAGCCAGATTGTTGAACATTCCAGAAAGCTCCGGGATATGGAGACCCGACTGGCCCAAGAGACCCACAGAATGCGAGCTGCTCTCGTTCAACTCTCCGATTTACACAAGGTCAGTCAAGCTTCAGTAGCATTGAATAATGTGTGGCAGCCAGAGATAATTAGGGGTCGACAGAAACAAATAGTGGAGCAATGTGTTGTACCAGTTGAGTCTCGGCTCCGTGCCTTTGAAATGGAGCTTAGGCTTTGCAAGCAGCAGATTTCAGGGTTAGAAAAGGCGTGTAAAGATGAGAAGCGACGGCTATGTTTGGCTGAACAAGAGTTGCAATCTATGACATATCAACCCTTATTACGAGATCATCAAAATCTACGGGATGATGCCGCTCAACGTACTAGCAAGAGCAAAAGGTTGAAAAGATTGCATGGCCAAGGAAGAAAATCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like

Protein Analysis

241

Amino Acids

28.04

Weight (kDa)

9.95

Isoelectric Point (pI)

59.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 5 - 48 8.1e-08 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 101
Acc36I ACCTGC 1 cut(s) 101
AccBSI CCGCTC 2 cut(s) 266, 662
AccI GTMKAC 1 cut(s) 448
AciI CCGC 3 cut(s) 142, 266, 660
AclWI GGATC 1 cut(s) 132
AcoI YGGCCR 1 cut(s) 703
AcuI CTGAAG 1 cut(s) 387
AcyI GRCGYC 1 cut(s) 100
AfaI GTAC 2 cut(s) 480, 670
AfiI CCNNNNNNNGG 1 cut(s) 319
AgsI TTSAA 5 cut(s) 296, 371, 415, 509, 691
AluBI AGCT 7 cut(s) 8, 28, 63, 310, 359, 401, 517
AluI AGCT 7 cut(s) 8, 28, 63, 310, 359, 401, 517
Alw26I GTCTC 3 cut(s) 317, 335, 495
AlwI GGATC 1 cut(s) 132
AoxI GGCC 2 cut(s) 333, 703
ApeKI GCWGC 3 cut(s) 359, 427, 532
AspS9I GGNCC 2 cut(s) 135, 334
AsuC2I CCSGG 1 cut(s) 314
AsuHPI GGTGA 1 cut(s) 82
AvaII GGWCC 1 cut(s) 135
BalI TGGCCA 1 cut(s) 705
BbvI GCAGC 3 cut(s) 346, 439, 544
BccI CCATC 1 cut(s) 264
BceAI ACGGC 1 cut(s) 593
BcnI CCSGG 1 cut(s) 314
BcoDI GTCTC 3 cut(s) 317, 335, 495
BfaI CTAG 2 cut(s) 44, 672
BfmI CTRYAG 1 cut(s) 94
BfuAI ACCTGC 1 cut(s) 101
BisI GCNGC 4 cut(s) 360, 428, 533, 660
BlsI GCNGC 4 cut(s) 361, 429, 534, 661
Bme1390I CCNGG 1 cut(s) 314
Bme18I GGWCC 1 cut(s) 135
BmgT120I GGNCC 2 cut(s) 135, 334
BmiI GGNNCC 2 cut(s) 137, 497
BmrFI CCNGG 1 cut(s) 314
BmsI GCATC 1 cut(s) 646
BplI GAGNNNNNCTC 2 cut(s) 348, 380
Bpu10I CCTNAGC 1 cut(s) 518
BpuMI CCSGG 1 cut(s) 314
BsaBI GATNNNNATC 1 cut(s) 123
BsaHI GRCGYC 1 cut(s) 100
BsaI GGTCTC 2 cut(s) 317, 335
BsaJI CCNNGG 1 cut(s) 706
BsaXI ACNNNNNCTCC 2 cut(s) 131, 161
Bsc4I CCNNNNNNNGG 1 cut(s) 319
Bse1I ACTGG 2 cut(s) 336, 482
Bse3DI GCAATG 1 cut(s) 476
Bse8I GATNNNNATC 1 cut(s) 123
BseDI CCNNGG 1 cut(s) 706
BseGI GGATG 1 cut(s) 658
BseJI GATNNNNATC 1 cut(s) 123
BseLI CCNNNNNNNGG 1 cut(s) 319
BseMI GCAATG 1 cut(s) 476
BseMII CTCAG 1 cut(s) 232
BseNI ACTGG 2 cut(s) 336, 482
BseRI GAGGAG 6 cut(s) 139, 153, 156, 169, 172, 187
BseXI GCAGC 3 cut(s) 346, 439, 544
BshFI GGCC 2 cut(s) 335, 705
BsiSI CCGG 1 cut(s) 313
BslFI GGGAC 2 cut(s) 121, 251
BslI CCNNNNNNNGG 1 cut(s) 319
BsmAI GTCTC 3 cut(s) 317, 335, 495
BsmFI GGGAC 2 cut(s) 121, 251
BsmI GAATGC 1 cut(s) 357
BsnI GGCC 2 cut(s) 335, 705
Bso31I GGTCTC 2 cut(s) 317, 335
Bsp143I GATC 3 cut(s) 124, 232, 634
BspACI CCGC 3 cut(s) 142, 266, 660
BspANI GGCC 2 cut(s) 335, 705
BspCNI CTCAG 1 cut(s) 231
BspLI GGNNCC 2 cut(s) 137, 497
BspMAI CTGCAG 1 cut(s) 98
BspMI ACCTGC 1 cut(s) 101
BspPI GGATC 1 cut(s) 132
BspQI GCTCTTC 1 cut(s) 15
BspTNI GGTCTC 2 cut(s) 317, 335
BsrBI CCGCTC 2 cut(s) 266, 662
BsrDI GCAATG 1 cut(s) 476
BsrI ACTGG 2 cut(s) 336, 482
BssECI CCNNGG 1 cut(s) 706
BssMI GATC 3 cut(s) 124, 232, 634
BssNI GRCGYC 1 cut(s) 100
BssT1I CCWWGG 1 cut(s) 706
Bst6I CTCTTC 1 cut(s) 15
BstACI GRCGYC 1 cut(s) 100
BstC8I GCNNGC 2 cut(s) 357, 530
BstDEI CTNAG 2 cut(s) 218, 518
BstF5I GGATG 1 cut(s) 658
BstKTI GATC 3 cut(s) 127, 235, 637
BstMAI GTCTC 3 cut(s) 317, 335, 495
BstMBI GATC 3 cut(s) 124, 232, 634
BstMWI GCNNNNNNNGC 3 cut(s) 34, 407, 529
BstSCI CCNGG 1 cut(s) 312
BstSFI CTRYAG 1 cut(s) 94
BstV1I GCAGC 3 cut(s) 346, 439, 544
BsuRI GGCC 2 cut(s) 335, 705
BtsCI GGATG 1 cut(s) 658
BveI ACCTGC 1 cut(s) 101
Cac8I GCNNGC 2 cut(s) 357, 530
Cfr13I GGNCC 2 cut(s) 135, 334
CseI GACGC 1 cut(s) 108
Csp6I GTAC 2 cut(s) 479, 669
CviAII CATG 1 cut(s) 701
CviQI GTAC 2 cut(s) 479, 669
DdeI CTNAG 2 cut(s) 218, 518
DpnI GATC 3 cut(s) 126, 234, 636
DpnII GATC 3 cut(s) 124, 232, 634
EaeI YGGCCR 1 cut(s) 703
Eam1104I CTCTTC 1 cut(s) 15
EarI CTCTTC 1 cut(s) 15
Eco130I CCWWGG 1 cut(s) 706
Eco31I GGTCTC 2 cut(s) 317, 335
Eco47I GGWCC 1 cut(s) 135
Eco57I CTGAAG 1 cut(s) 387
EcoT14I CCWWGG 1 cut(s) 706
ErhI CCWWGG 1 cut(s) 706
FaeI CATG 1 cut(s) 704
FaiI YATR 7 cut(s) 213, 320, 583, 611, 616, 702, 721
FaqI GGGAC 2 cut(s) 121, 251
FatI CATG 1 cut(s) 700
FblI GTMKAC 1 cut(s) 448
Fnu4HI GCNGC 4 cut(s) 360, 428, 533, 660
FokI GGATG 1 cut(s) 665
Fsp4HI GCNGC 4 cut(s) 360, 428, 533, 660
FspBI CTAG 2 cut(s) 44, 672
GluI GCNGC 4 cut(s) 360, 428, 533, 660
HaeIII GGCC 2 cut(s) 335, 705
HapII CCGG 1 cut(s) 313
HgaI GACGC 1 cut(s) 108
Hin1I GRCGYC 1 cut(s) 100
Hin1II CATG 1 cut(s) 704
HincII GTYRAC 1 cut(s) 449
HindII GTYRAC 1 cut(s) 449
HindIII AAGCTT 1 cut(s) 399
HinfI GANTC 2 cut(s) 39, 488
HpaII CCGG 1 cut(s) 313
HphI GGTGA 1 cut(s) 82
Hpy166II GTNNAC 1 cut(s) 449
Hpy188I TCNGA 4 cut(s) 118, 154, 221, 379
Hpy188III TCNNGA 2 cut(s) 236, 303
Hpy8I GTNNAC 1 cut(s) 449
Hpy99I CGWCG 1 cut(s) 579
HpyAV CCTTC 1 cut(s) 271
HpyCH4IV ACGT 1 cut(s) 667
HpyCH4V TGCA 4 cut(s) 96, 528, 604, 700
HpyF10VI GCNNNNNNNGC 3 cut(s) 34, 407, 529
HpyF3I CTNAG 2 cut(s) 218, 518
HpySE526I ACGT 1 cut(s) 667
Hsp92I GRCGYC 1 cut(s) 100
Hsp92II CATG 1 cut(s) 704
Kzo9I GATC 3 cut(s) 124, 232, 634
LguI GCTCTTC 1 cut(s) 15
LmnI GCTCC 4 cut(s) 315, 466, 501, 514
Lsp1109I GCAGC 3 cut(s) 346, 439, 544
LweI GCATC 1 cut(s) 646
MaeI CTAG 2 cut(s) 44, 672
MaeII ACGT 1 cut(s) 667
MaeIII GTNAC 1 cut(s) 88
MalI GATC 3 cut(s) 126, 234, 636
MbiI CCGCTC 2 cut(s) 266, 662
MboI GATC 3 cut(s) 124, 232, 634
MboII GAAGA 2 cut(s) 5, 723
MlsI TGGCCA 1 cut(s) 705
MluCI AATT 1 cut(s) 438
MluNI TGGCCA 1 cut(s) 705
MlyI GAGTC 2 cut(s) 48, 497
Mox20I TGGCCA 1 cut(s) 705
MscI TGGCCA 1 cut(s) 705
MseI TTAA 1 cut(s) 171
Msp20I TGGCCA 1 cut(s) 705
MspI CCGG 1 cut(s) 313
MspR9I CCNGG 1 cut(s) 314
Mva1269I GAATGC 1 cut(s) 357
MwoI GCNNNNNNNGC 3 cut(s) 34, 407, 529
NciI CCSGG 1 cut(s) 314
NdeII GATC 3 cut(s) 124, 232, 634
NlaIII CATG 1 cut(s) 704
NlaIV GGNNCC 2 cut(s) 137, 497
NmeAIII GCCGAG 1 cut(s) 472
NmuCI GTSAC 1 cut(s) 88
PaqCI CACCTGC 1 cut(s) 101
PciSI GCTCTTC 1 cut(s) 15
PcsI WCGNNNNNNNCGW 1 cut(s) 106
PctI GAATGC 1 cut(s) 357
PfoI TCCNGGA 1 cut(s) 312
PkrI GCNGC 4 cut(s) 361, 429, 534, 661
PleI GAGTC 2 cut(s) 47, 496
PpsI GAGTC 2 cut(s) 47, 496
PspN4I GGNNCC 2 cut(s) 137, 497
PspPI GGNCC 2 cut(s) 135, 334
PstI CTGCAG 1 cut(s) 98
RsaI GTAC 2 cut(s) 480, 670
RsaNI GTAC 2 cut(s) 479, 669
SalI GTCGAC 1 cut(s) 447
SapI GCTCTTC 1 cut(s) 15
SaqAI TTAA 1 cut(s) 171
SatI GCNGC 4 cut(s) 360, 428, 533, 660
Sau3AI GATC 3 cut(s) 124, 232, 634
Sau96I GGNCC 2 cut(s) 135, 334
SchI GAGTC 2 cut(s) 48, 497
ScrFI CCNGG 1 cut(s) 314
SfaNI GCATC 1 cut(s) 646
SfcI CTRYAG 1 cut(s) 94
SinI GGWCC 1 cut(s) 135
Sse9I AATT 1 cut(s) 438
SsiI CCGC 3 cut(s) 142, 266, 660
SspMI CTAG 2 cut(s) 44, 672
StyD4I CCNGG 1 cut(s) 312
StyI CCWWGG 1 cut(s) 706
TaiI ACGT 1 cut(s) 670
TaqI TCGA 1 cut(s) 448
TasI AATT 1 cut(s) 438
TauI GCSGC 1 cut(s) 662
Tru1I TTAA 1 cut(s) 171
Tru9I TTAA 1 cut(s) 171
TseFI GTSAC 1 cut(s) 88
TseI GCWGC 3 cut(s) 359, 427, 532
Tsp45I GTSAC 1 cut(s) 88
TspGWI ACGGA 1 cut(s) 488
VpaK11BI GGWCC 1 cut(s) 135
XcmI CCANNNNNNNNNTGG 1 cut(s) 27
XmiI GTMKAC 1 cut(s) 448
XspI CTAG 2 cut(s) 44, 672
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.