Prupe.7G018500_v2.0.a1

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0006260
Physical Location & Seq
Reverse (-)
2742545 .. 2751266
8722 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G018500.9

Sequence Viewer

Length: 744 bp
ATGTCAGCTCTCCCTGAGGAGCTATGGAGGCGAATTTTAGAAATCGGTGTTCAAAGACGCGGCGTTAGCTACAAAGACCTCTGCTGTCTATCAATCTCCTCCAGGCGCCTCCACCGATTATGCGATGAAGACTTTCTCTGGTCCCACCTCCTCTCCTCTGATTTCCCGCCTTTCTTTTCCCCTTCTTCTTCCTCAATTACCTCCGCGCATTCATCATCCTGTAAATACCTATACAAACTCAGGTATGAAAGGGATAGGGATAAGAAAATAGCGGCACATCGGAGAGCGGTGTTGAGGAAGGAGAGTCAGGTTTTAGAACGTTTTATGAGGCTCCGAGACATGGAGACCCGATTGGCTGAAGAGACTAACAAAATGCGAGCAACTCTTGCTGAGCTCTCAAATTTGAGCAATGTCAGGCAAGCTTCAGTAGCATTGAATGTATGGCAGCCAGAGATCATCCGGGGTAGACAAAAGCAAATAGTAGAGCAATGTGTTGTACCTGTTGAGTCTCGGTTCCATGTACTTCACATGGAGCTCAAGCTCTGCAAGCAGCAGATTTTAGGGTTAGAAAAGGCCCATATAGATGAGAAACGAAGGCTTGCTTTGGTGGAAGAAGAGTTGCAATCAATGAGATATCACCCTTTAAGAGACCAAAAGCCAATTAATAGCGGGGAGGTTGAATTTAACATCAAGAGAAAAAAGTTGAAAAAATGTGAAGTTCATTGTCCAGGGAGGGAACCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like

Protein Analysis

248

Amino Acids

29.08

Weight (kDa)

9.52

Isoelectric Point (pI)

68.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 105
AccBSI CCGCTC 1 cut(s) 287
AccI GTMKAC 1 cut(s) 466
AccII CGCG 2 cut(s) 60, 206
AciI CCGC 6 cut(s) 60, 167, 204, 272, 287, 669
AclI AACGTT 1 cut(s) 319
AcsI RAATTY 3 cut(s) 33, 400, 680
AcuI CTGAAG 2 cut(s) 378, 408
AcyI GRCGYC 1 cut(s) 106
AfaI GTAC 2 cut(s) 498, 522
AfiI CCNNNNNNNGG 1 cut(s) 340
AgsI TTSAA 4 cut(s) 53, 436, 680, 706
AjnI CCWGG 2 cut(s) 101, 727
AluBI AGCT 7 cut(s) 8, 22, 69, 394, 422, 535, 541
AluI AGCT 7 cut(s) 8, 22, 69, 394, 422, 535, 541
Alw21I GWGCWC 2 cut(s) 396, 537
Alw26I GTCTC 5 cut(s) 330, 338, 356, 513, 642
AoxI GGCC 1 cut(s) 573
ApeKI GCWGC 2 cut(s) 445, 550
ApoI RAATTY 3 cut(s) 33, 400, 680
AseI ATTAAT 1 cut(s) 663
Asp700I GAANNNNTTC 1 cut(s) 132
AspLEI GCGC 2 cut(s) 108, 208
AspS9I GGNCC 2 cut(s) 141, 574
AsuC2I CCSGG 1 cut(s) 461
AsuHPI GGTGA 1 cut(s) 629
AvaII GGWCC 1 cut(s) 141
AxyI CCTNAGG 1 cut(s) 15
BanI GGYRCC 1 cut(s) 105
BanII GRGCYC 2 cut(s) 396, 537
BbsI GAAGAC 1 cut(s) 135
Bbv12I GWGCWC 2 cut(s) 396, 537
BbvI GCAGC 2 cut(s) 457, 562
BciT130I CCWGG 2 cut(s) 103, 729
BcnI CCSGG 1 cut(s) 461
BcoDI GTCTC 5 cut(s) 330, 338, 356, 513, 642
BfoI RGCGCY 1 cut(s) 109
BisI GCNGC 4 cut(s) 61, 273, 446, 551
BlpI GCTNAGC 1 cut(s) 390
BlsI GCNGC 4 cut(s) 62, 274, 447, 552
Bme1390I CCNGG 3 cut(s) 103, 461, 729
Bme18I GGWCC 1 cut(s) 141
BmgT120I GGNCC 2 cut(s) 141, 574
BmiI GGNNCC 5 cut(s) 107, 143, 332, 515, 738
BmrFI CCNGG 3 cut(s) 103, 461, 729
BpiI GAAGAC 1 cut(s) 135
BpmI CTGGAG 1 cut(s) 85
Bpu1102I GCTNAGC 1 cut(s) 390
BpuEI CTTGAG 1 cut(s) 521
BpuMI CCSGG 1 cut(s) 461
BsaHI GRCGYC 1 cut(s) 106
BsaI GGTCTC 2 cut(s) 338, 642
BsaJI CCNNGG 2 cut(s) 460, 728
BsaXI ACNNNNNCTCC 2 cut(s) 137, 167
Bsc4I CCNNNNNNNGG 1 cut(s) 340
Bse21I CCTNAGG 1 cut(s) 15
Bse3DI GCAATG 2 cut(s) 415, 494
BseBI CCWGG 2 cut(s) 103, 729
BseDI CCNNGG 2 cut(s) 460, 728
BseGI GGATG 2 cut(s) 215, 456
BseLI CCNNNNNNNGG 1 cut(s) 340
BseMI GCAATG 2 cut(s) 415, 494
BseMII CTCAG 3 cut(s) 6, 253, 381
BseRI GAGGAG 4 cut(s) 32, 88, 140, 145
BseXI GCAGC 2 cut(s) 457, 562
Bsh1236I CGCG 2 cut(s) 60, 206
BshFI GGCC 1 cut(s) 575
BshNI GGYRCC 1 cut(s) 105
BsiHKAI GWGCWC 2 cut(s) 396, 537
BsiSI CCGG 1 cut(s) 460
BslFI GGGAC 1 cut(s) 127
BslI CCNNNNNNNGG 1 cut(s) 340
BsmAI GTCTC 5 cut(s) 330, 338, 356, 513, 642
BsmFI GGGAC 1 cut(s) 127
BsmI GAATGC 1 cut(s) 208
BsnI GGCC 1 cut(s) 575
Bso31I GGTCTC 2 cut(s) 338, 642
Bsp1286I GDGCHC 2 cut(s) 396, 537
Bsp143I GATC 1 cut(s) 453
Bsp1720I GCTNAGC 1 cut(s) 390
BspACI CCGC 6 cut(s) 60, 167, 204, 272, 287, 669
BspANI GGCC 1 cut(s) 575
BspCNI CTCAG 3 cut(s) 7, 252, 382
BspFNI CGCG 2 cut(s) 60, 206
BspLI GGNNCC 5 cut(s) 107, 143, 332, 515, 738
BspT107I GGYRCC 1 cut(s) 105
BspTNI GGTCTC 2 cut(s) 338, 642
BsrBI CCGCTC 1 cut(s) 287
BsrDI GCAATG 2 cut(s) 415, 494
BssECI CCNNGG 2 cut(s) 460, 728
BssMI GATC 1 cut(s) 453
BssNI GRCGYC 1 cut(s) 106
Bst2UI CCWGG 2 cut(s) 103, 729
Bst6I CTCTTC 2 cut(s) 354, 609
BstACI GRCGYC 1 cut(s) 106
BstAPI GCANNNNNTGC 1 cut(s) 386
BstC8I GCNNGC 4 cut(s) 378, 420, 548, 600
BstDEI CTNAG 4 cut(s) 15, 239, 390, 741
BstF5I GGATG 2 cut(s) 215, 456
BstFNI CGCG 2 cut(s) 60, 206
BstH2I RGCGCY 1 cut(s) 109
BstHHI GCGC 2 cut(s) 108, 208
BstKTI GATC 1 cut(s) 456
BstMAI GTCTC 5 cut(s) 330, 338, 356, 513, 642
BstMBI GATC 1 cut(s) 453
BstMWI GCNNNNNNNGC 5 cut(s) 28, 66, 386, 428, 547
BstNI CCWGG 2 cut(s) 103, 729
BstSCI CCNGG 3 cut(s) 101, 459, 727
BstUI CGCG 2 cut(s) 60, 206
BstV1I GCAGC 2 cut(s) 457, 562
BstV2I GAAGAC 1 cut(s) 135
Bsu36I CCTNAGG 1 cut(s) 15
BsuRI GGCC 1 cut(s) 575
BtgZI GCGATG 1 cut(s) 138
BtsCI GGATG 2 cut(s) 215, 456
Cac8I GCNNGC 4 cut(s) 378, 420, 548, 600
CfoI GCGC 2 cut(s) 108, 208
Cfr13I GGNCC 2 cut(s) 141, 574
CseI GACGC 1 cut(s) 66
Csp6I GTAC 2 cut(s) 497, 521
CviAII CATG 3 cut(s) 340, 518, 529
CviQI GTAC 2 cut(s) 497, 521
DdeI CTNAG 4 cut(s) 15, 239, 390, 741
DinI GGCGCC 1 cut(s) 107
DpnI GATC 1 cut(s) 455
DpnII GATC 1 cut(s) 453
Eam1104I CTCTTC 2 cut(s) 354, 609
EarI CTCTTC 2 cut(s) 354, 609
Ecl136II GAGCTC 2 cut(s) 394, 535
Eco24I GRGCYC 2 cut(s) 396, 537
Eco31I GGTCTC 2 cut(s) 338, 642
Eco32I GATATC 1 cut(s) 635
Eco47I GGWCC 1 cut(s) 141
Eco53kI GAGCTC 2 cut(s) 394, 535
Eco57I CTGAAG 2 cut(s) 378, 408
Eco81I CCTNAGG 1 cut(s) 15
EcoICRI GAGCTC 2 cut(s) 394, 535
EcoRII CCWGG 2 cut(s) 101, 727
EcoRV GATATC 1 cut(s) 635
EcoT38I GRGCYC 2 cut(s) 396, 537
EgeI GGCGCC 1 cut(s) 107
EheI GGCGCC 1 cut(s) 107
FaeI CATG 3 cut(s) 343, 521, 532
FalI AAGNNNNNCTT 2 cut(s) 586, 618
FaqI GGGAC 1 cut(s) 127
FatI CATG 3 cut(s) 339, 517, 528
FauI CCCGC 2 cut(s) 174, 662
FblI GTMKAC 1 cut(s) 466
Fnu4HI GCNGC 4 cut(s) 61, 273, 446, 551
FokI GGATG 2 cut(s) 202, 443
FriOI GRGCYC 2 cut(s) 396, 537
Fsp4HI GCNGC 4 cut(s) 61, 273, 446, 551
GlaI GCGC 2 cut(s) 107, 207
GluI GCNGC 4 cut(s) 61, 273, 446, 551
GsuI CTGGAG 1 cut(s) 85
HaeII RGCGCY 1 cut(s) 109
HaeIII GGCC 1 cut(s) 575
HapII CCGG 1 cut(s) 460
HgaI GACGC 1 cut(s) 66
HhaI GCGC 2 cut(s) 108, 208
Hin1I GRCGYC 1 cut(s) 106
Hin1II CATG 3 cut(s) 343, 521, 532
Hin6I GCGC 2 cut(s) 106, 206
HinP1I GCGC 2 cut(s) 106, 206
HindIII AAGCTT 1 cut(s) 420
HinfI GANTC 2 cut(s) 304, 506
HpaII CCGG 1 cut(s) 460
HphI GGTGA 1 cut(s) 629
Hpy166II GTNNAC 1 cut(s) 467
Hpy188I TCNGA 3 cut(s) 160, 282, 335
Hpy188III TCNNGA 1 cut(s) 691
Hpy8I GTNNAC 1 cut(s) 467
HpyAV CCTTC 3 cut(s) 192, 292, 588
HpyCH4IV ACGT 1 cut(s) 319
HpyCH4V TGCA 2 cut(s) 546, 622
HpyF10VI GCNNNNNNNGC 5 cut(s) 28, 66, 386, 428, 547
HpyF3I CTNAG 4 cut(s) 15, 239, 390, 741
HpySE526I ACGT 1 cut(s) 319
Hsp92I GRCGYC 1 cut(s) 106
Hsp92II CATG 3 cut(s) 343, 521, 532
HspAI GCGC 2 cut(s) 106, 206
KasI GGCGCC 1 cut(s) 105
Kzo9I GATC 1 cut(s) 453
LmnI GCTCC 3 cut(s) 19, 336, 532
Lsp1109I GCAGC 2 cut(s) 457, 562
MaeII ACGT 1 cut(s) 319
MalI GATC 1 cut(s) 455
MbiI CCGCTC 1 cut(s) 287
MboI GATC 1 cut(s) 453
MboII GAAGA 6 cut(s) 140, 177, 180, 371, 623, 626
MhlI GDGCHC 2 cut(s) 396, 537
MluCI AATT 5 cut(s) 33, 195, 400, 660, 680
Mly113I GGCGCC 1 cut(s) 106
MlyI GAGTC 2 cut(s) 313, 515
MroXI GAANNNNTTC 1 cut(s) 132
MseI TTAA 3 cut(s) 644, 663, 684
MslI CAYNNNNRTG 1 cut(s) 582
MspI CCGG 1 cut(s) 460
MspR9I CCNGG 3 cut(s) 103, 461, 729
Mva1269I GAATGC 1 cut(s) 208
MvaI CCWGG 2 cut(s) 103, 729
MvnI CGCG 2 cut(s) 60, 206
MwoI GCNNNNNNNGC 5 cut(s) 28, 66, 386, 428, 547
NarI GGCGCC 1 cut(s) 106
NciI CCSGG 1 cut(s) 461
NdeII GATC 1 cut(s) 453
NlaIII CATG 3 cut(s) 343, 521, 532
NlaIV GGNNCC 5 cut(s) 107, 143, 332, 515, 738
PctI GAATGC 1 cut(s) 208
PdmI GAANNNNTTC 1 cut(s) 132
PkrI GCNGC 4 cut(s) 62, 274, 447, 552
PleI GAGTC 2 cut(s) 312, 514
PluTI GGCGCC 1 cut(s) 109
PpsI GAGTC 2 cut(s) 312, 514
PshBI ATTAAT 1 cut(s) 663
Psp124BI GAGCTC 2 cut(s) 396, 537
Psp1406I AACGTT 1 cut(s) 319
Psp6I CCWGG 2 cut(s) 101, 727
PspGI CCWGG 2 cut(s) 101, 727
PspN4I GGNNCC 5 cut(s) 107, 143, 332, 515, 738
PspPI GGNCC 2 cut(s) 141, 574
RsaI GTAC 2 cut(s) 498, 522
RsaNI GTAC 2 cut(s) 497, 521
RseI CAYNNNNRTG 1 cut(s) 582
SacI GAGCTC 2 cut(s) 396, 537
SaqAI TTAA 3 cut(s) 644, 663, 684
SatI GCNGC 4 cut(s) 61, 273, 446, 551
Sau3AI GATC 1 cut(s) 453
Sau96I GGNCC 2 cut(s) 141, 574
SchI GAGTC 2 cut(s) 313, 515
ScrFI CCNGG 3 cut(s) 103, 461, 729
SduI GDGCHC 2 cut(s) 396, 537
SfoI GGCGCC 1 cut(s) 107
SinI GGWCC 1 cut(s) 141
SmiMI CAYNNNNRTG 1 cut(s) 582
SmlI CTYRAG 1 cut(s) 536
SmoI CTYRAG 1 cut(s) 536
Sse9I AATT 5 cut(s) 33, 195, 400, 660, 680
SsiI CCGC 6 cut(s) 60, 167, 204, 272, 287, 669
SspDI GGCGCC 1 cut(s) 105
SstI GAGCTC 2 cut(s) 396, 537
StyD4I CCNGG 3 cut(s) 101, 459, 727
TaiI ACGT 1 cut(s) 322
TasI AATT 5 cut(s) 33, 195, 400, 660, 680
TatI WGTACW 1 cut(s) 520
TauI GCSGC 2 cut(s) 63, 275
Tru1I TTAA 3 cut(s) 644, 663, 684
Tru9I TTAA 3 cut(s) 644, 663, 684
TseI GCWGC 2 cut(s) 445, 550
TspDTI ATGAA 4 cut(s) 141, 201, 261, 710
VpaK11BI GGWCC 1 cut(s) 141
VspI ATTAAT 1 cut(s) 663
XapI RAATTY 3 cut(s) 33, 400, 680
XmiI GTMKAC 1 cut(s) 466
XmnI GAANNNNTTC 1 cut(s) 132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.