FvH4_3g02594

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0006260
Physical Location & Seq
Reverse (-)
1322663 .. 1323853
1191 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g02594.t1

Sequence Viewer

Length: 936 bp
ATGGTTTGTTTACTTATTTCGAATGGCTGCGTTAACTACCACAAACAGTTGCGAAGATGGAAGTGGCCTCCGTTCAATTTACCAGAAGCAGGAGAGGGGTGTGAGGATATGATGATGTTGGTTATCCCAGACAAGCTGTGGAGGCGAGTCTTAGAAATCGGGGGGTTGAGCTACAAAGACCTCTGCTGTGTATCAATCACCTGCTGGCGCATCCACCGACTATCCGATGAGGATCTTCTCTGGTCCCGCATCCTCTCCTCCGATTTCCCTCCTCATTCCTCTTCTTCGTCCTCCTCTAAATCTCTCTATAAACTCAGATTTGAGAGAGATCGGGATAAGAGAAAGGTGACCCATCAAAGAGCGGTGTTGAGGAAGGAGAGCCAGATTATTGAACATTCCCGAAAGCTCCGGGATATGGAGACCCGATTGGCCCAAGAGACCGACAGAATGCGAGCCACTCTTGTTGAACTCTCCAATTTTCACAAGGTCAGGCAAGCTTCTTCACTAGCATTGAATAATGTGTGGCAGCGAGAGATAACTAGGGGTCGACAAAAACAAATAGTGGAGCAATGCGTTGTACCAGCTGAGTCTCGGCACCATGCCCTTGAAATGGAGCTTAGGCTCTGTAAGATGCTGATTTCAGGGTTAGAAAAGGCGTGTAAAGATGAGAAGCGACGGCTTGGTTTGGTTGAACAAGAGTTGCAACCTATGAGATATCACCCCTTACGAGATCAGAAGCCACTGATTCCAGGGGATGCTCAATGTACTGGCAAGAGCAAAAAGTTGAAAAGATTTCATGGCCAAGGAATCTGTTTGTCTTGTCGTCATCCTTCTTCCTCATCAGATTACATTGTCATGGTTGACTCGATTAGGTTCCAAGTTATTGAACAATACGGTCCAGCAATAGAACTTCGAGTCAATGTGAGTACTAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like

Protein Analysis

312

Amino Acids

36.26

Weight (kDa)

9.5

Isoelectric Point (pI)

58.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 209
Acc36I ACCTGC 1 cut(s) 209
AccB1I GGYRCC 1 cut(s) 594
AccBSI CCGCTC 1 cut(s) 362
AccI GTMKAC 1 cut(s) 547
AciI CCGC 2 cut(s) 247, 362
AclWI GGATC 1 cut(s) 240
AcoI YGGCCR 1 cut(s) 799
AfaI GTAC 3 cut(s) 579, 766, 928
AfiI CCNNNNNNNGG 3 cut(s) 89, 415, 610
AgsI TTSAA 8 cut(s) 76, 392, 467, 514, 608, 692, 787, 887
AjnI CCWGG 1 cut(s) 748
AluBI AGCT 6 cut(s) 136, 171, 406, 497, 584, 616
AluI AGCT 6 cut(s) 136, 171, 406, 497, 584, 616
Alw26I GTCTC 3 cut(s) 413, 431, 594
AlwI GGATC 1 cut(s) 240
AoxI GGCC 3 cut(s) 65, 429, 799
ApeKI GCWGC 2 cut(s) 27, 526
AspLEI GCGC 1 cut(s) 210
AspS9I GGNCC 3 cut(s) 243, 430, 896
AsuC2I CCSGG 1 cut(s) 410
AsuHPI GGTGA 3 cut(s) 190, 358, 710
AsuII TTCGAA 1 cut(s) 20
AvaII GGWCC 2 cut(s) 243, 896
BalI TGGCCA 1 cut(s) 801
BanI GGYRCC 1 cut(s) 594
BbvI GCAGC 2 cut(s) 14, 538
BccI CCATC 2 cut(s) 51, 360
BceAI ACGGC 1 cut(s) 692
BciT130I CCWGG 1 cut(s) 750
BcnI CCSGG 1 cut(s) 410
BcoDI GTCTC 3 cut(s) 413, 431, 594
BfaI CTAG 2 cut(s) 506, 540
BfuAI ACCTGC 1 cut(s) 209
BisI GCNGC 2 cut(s) 28, 527
BlsI GCNGC 2 cut(s) 29, 528
BmcAI AGTACT 1 cut(s) 928
Bme1390I CCNGG 2 cut(s) 410, 750
Bme18I GGWCC 2 cut(s) 243, 896
BmgT120I GGNCC 3 cut(s) 243, 430, 896
BmiI GGNNCC 3 cut(s) 245, 596, 875
BmrFI CCNGG 2 cut(s) 410, 750
BmsI GCATC 4 cut(s) 219, 258, 621, 745
Bpu10I CCTNAGC 1 cut(s) 617
Bpu14I TTCGAA 1 cut(s) 20
BpuMI CCSGG 1 cut(s) 410
BsaBI GATNNNNATC 1 cut(s) 231
BsaI GGTCTC 2 cut(s) 413, 431
BsaJI CCNNGG 2 cut(s) 749, 802
Bsc4I CCNNNNNNNGG 3 cut(s) 89, 415, 610
Bse1I ACTGG 1 cut(s) 772
Bse3DI GCAATG 1 cut(s) 575
Bse8I GATNNNNATC 1 cut(s) 231
BseBI CCWGG 1 cut(s) 750
BseDI CCNNGG 2 cut(s) 749, 802
BseGI GGATG 4 cut(s) 210, 249, 760, 826
BseJI GATNNNNATC 1 cut(s) 231
BseLI CCNNNNNNNGG 3 cut(s) 89, 415, 610
BseMI GCAATG 1 cut(s) 575
BseMII CTCAG 2 cut(s) 328, 576
BseNI ACTGG 1 cut(s) 772
BseRI GAGGAG 3 cut(s) 247, 261, 283
BseXI GCAGC 2 cut(s) 14, 538
BshFI GGCC 3 cut(s) 67, 431, 801
BshNI GGYRCC 1 cut(s) 594
BsiSI CCGG 1 cut(s) 409
BslFI GGGAC 1 cut(s) 229
BslI CCNNNNNNNGG 3 cut(s) 89, 415, 610
BsmAI GTCTC 3 cut(s) 413, 431, 594
BsmFI GGGAC 1 cut(s) 229
BsmI GAATGC 1 cut(s) 453
BsnI GGCC 3 cut(s) 67, 431, 801
Bso31I GGTCTC 2 cut(s) 413, 431
Bsp119I TTCGAA 1 cut(s) 20
Bsp143I GATC 3 cut(s) 232, 328, 730
BspACI CCGC 2 cut(s) 247, 362
BspANI GGCC 3 cut(s) 67, 431, 801
BspCNI CTCAG 2 cut(s) 327, 577
BspLI GGNNCC 3 cut(s) 245, 596, 875
BspMI ACCTGC 1 cut(s) 209
BspPI GGATC 1 cut(s) 240
BspT104I TTCGAA 1 cut(s) 20
BspT107I GGYRCC 1 cut(s) 594
BspTNI GGTCTC 2 cut(s) 413, 431
BsrBI CCGCTC 1 cut(s) 362
BsrDI GCAATG 1 cut(s) 575
BsrI ACTGG 1 cut(s) 772
BssECI CCNNGG 2 cut(s) 749, 802
BssMI GATC 3 cut(s) 232, 328, 730
BssT1I CCWWGG 1 cut(s) 802
Bst2UI CCWGG 1 cut(s) 750
Bst4CI ACNGT 2 cut(s) 48, 896
Bst6I CTCTTC 1 cut(s) 286
BstBI TTCGAA 1 cut(s) 20
BstC8I GCNNGC 3 cut(s) 206, 453, 495
BstDEI CTNAG 5 cut(s) 151, 314, 585, 617, 930
BstEII GGTNACC 1 cut(s) 346
BstF5I GGATG 4 cut(s) 210, 249, 760, 826
BstHHI GCGC 1 cut(s) 210
BstKTI GATC 3 cut(s) 235, 331, 733
BstMAI GTCTC 3 cut(s) 413, 431, 594
BstMBI GATC 3 cut(s) 232, 328, 730
BstMWI GCNNNNNNNGC 1 cut(s) 142
BstNI CCWGG 1 cut(s) 750
BstPI GGTNACC 1 cut(s) 346
BstSCI CCNGG 2 cut(s) 408, 748
BstV1I GCAGC 2 cut(s) 14, 538
BstX2I RGATCY 1 cut(s) 232
BstYI RGATCY 1 cut(s) 232
BsuRI GGCC 3 cut(s) 67, 431, 801
BtsCI GGATG 4 cut(s) 210, 249, 760, 826
BtsIMutI CAGTG 1 cut(s) 740
BveI ACCTGC 1 cut(s) 209
Cac8I GCNNGC 3 cut(s) 206, 453, 495
CfoI GCGC 1 cut(s) 210
Cfr13I GGNCC 3 cut(s) 243, 430, 896
Csp6I GTAC 3 cut(s) 578, 765, 927
CspCI CAANNNNNGTGG 2 cut(s) 445, 480
CviAII CATG 3 cut(s) 599, 797, 856
CviQI GTAC 3 cut(s) 578, 765, 927
DdeI CTNAG 5 cut(s) 151, 314, 585, 617, 930
DpnI GATC 3 cut(s) 234, 330, 732
DpnII GATC 3 cut(s) 232, 328, 730
EaeI YGGCCR 1 cut(s) 799
Eam1104I CTCTTC 1 cut(s) 286
EarI CTCTTC 1 cut(s) 286
Eco130I CCWWGG 1 cut(s) 802
Eco31I GGTCTC 2 cut(s) 413, 431
Eco32I GATATC 1 cut(s) 716
Eco47I GGWCC 2 cut(s) 243, 896
Eco91I GGTNACC 1 cut(s) 346
EcoO65I GGTNACC 1 cut(s) 346
EcoRII CCWGG 1 cut(s) 748
EcoRV GATATC 1 cut(s) 716
EcoT14I CCWWGG 1 cut(s) 802
ErhI CCWWGG 1 cut(s) 802
FaeI CATG 3 cut(s) 602, 800, 859
FaiI YATR 7 cut(s) 110, 309, 416, 600, 710, 798, 857
FaqI GGGAC 1 cut(s) 229
FatI CATG 3 cut(s) 598, 796, 855
FauI CCCGC 1 cut(s) 254
FblI GTMKAC 1 cut(s) 547
Fnu4HI GCNGC 2 cut(s) 28, 527
FokI GGATG 4 cut(s) 197, 236, 767, 813
Fsp4HI GCNGC 2 cut(s) 28, 527
FspBI CTAG 2 cut(s) 506, 540
GlaI GCGC 1 cut(s) 209
GluI GCNGC 2 cut(s) 28, 527
HaeIII GGCC 3 cut(s) 67, 431, 801
HapII CCGG 1 cut(s) 409
HhaI GCGC 1 cut(s) 210
Hin1II CATG 3 cut(s) 602, 800, 859
Hin6I GCGC 1 cut(s) 208
HinP1I GCGC 1 cut(s) 208
HincII GTYRAC 3 cut(s) 34, 548, 862
HindII GTYRAC 3 cut(s) 34, 548, 862
HindIII AAGCTT 1 cut(s) 495
HinfI GANTC 6 cut(s) 147, 587, 745, 807, 863, 915
HpaI GTTAAC 1 cut(s) 34
HpaII CCGG 1 cut(s) 409
HphI GGTGA 3 cut(s) 190, 358, 710
Hpy166II GTNNAC 4 cut(s) 11, 34, 548, 862
Hpy188I TCNGA 5 cut(s) 226, 262, 317, 735, 844
Hpy188III TCNNGA 2 cut(s) 332, 399
Hpy8I GTNNAC 4 cut(s) 11, 34, 548, 862
Hpy99I CGWCG 1 cut(s) 678
HpyAV CCTTC 2 cut(s) 367, 840
HpyCH4III ACNGT 2 cut(s) 48, 896
HpyCH4V TGCA 1 cut(s) 703
HpyF10VI GCNNNNNNNGC 1 cut(s) 142
HpyF3I CTNAG 5 cut(s) 151, 314, 585, 617, 930
Hsp92II CATG 3 cut(s) 602, 800, 859
HspAI GCGC 1 cut(s) 208
KspAI GTTAAC 1 cut(s) 34
Kzo9I GATC 3 cut(s) 232, 328, 730
LmnI GCTCC 3 cut(s) 411, 565, 613
Lsp1109I GCAGC 2 cut(s) 14, 538
LweI GCATC 4 cut(s) 219, 258, 621, 745
MaeI CTAG 2 cut(s) 506, 540
MaeIII GTNAC 1 cut(s) 346
MalI GATC 3 cut(s) 234, 330, 732
MbiI CCGCTC 1 cut(s) 362
MboI GATC 3 cut(s) 232, 328, 730
MboII GAAGA 6 cut(s) 66, 227, 273, 276, 492, 825
MflI RGATCY 1 cut(s) 232
MlsI TGGCCA 1 cut(s) 801
MluCI AATT 2 cut(s) 76, 475
MluNI TGGCCA 1 cut(s) 801
MlyI GAGTC 4 cut(s) 156, 596, 857, 924
Mox20I TGGCCA 1 cut(s) 801
MscI TGGCCA 1 cut(s) 801
MseI TTAA 1 cut(s) 33
MslI CAYNNNNRTG 1 cut(s) 854
Msp20I TGGCCA 1 cut(s) 801
MspA1I CMGCKG 1 cut(s) 584
MspI CCGG 1 cut(s) 409
MspR9I CCNGG 2 cut(s) 410, 750
Mva1269I GAATGC 1 cut(s) 453
MvaI CCWGG 1 cut(s) 750
MwoI GCNNNNNNNGC 1 cut(s) 142
NciI CCSGG 1 cut(s) 410
NdeII GATC 3 cut(s) 232, 328, 730
NlaIII CATG 3 cut(s) 602, 800, 859
NlaIV GGNNCC 3 cut(s) 245, 596, 875
NmeAIII GCCGAG 1 cut(s) 571
NmuCI GTSAC 1 cut(s) 346
NspV TTCGAA 1 cut(s) 20
PaqCI CACCTGC 1 cut(s) 209
PctI GAATGC 1 cut(s) 453
PfeI GAWTC 2 cut(s) 745, 807
PfoI TCCNGGA 1 cut(s) 408
PkrI GCNGC 2 cut(s) 29, 528
PleI GAGTC 4 cut(s) 155, 595, 857, 923
PpsI GAGTC 4 cut(s) 155, 595, 857, 923
Psp6I CCWGG 1 cut(s) 748
PspEI GGTNACC 1 cut(s) 346
PspGI CCWGG 1 cut(s) 748
PspN4I GGNNCC 3 cut(s) 245, 596, 875
PspPI GGNCC 3 cut(s) 243, 430, 896
PsuI RGATCY 1 cut(s) 232
PvuII CAGCTG 1 cut(s) 584
RsaI GTAC 3 cut(s) 579, 766, 928
RsaNI GTAC 3 cut(s) 578, 765, 927
RseI CAYNNNNRTG 1 cut(s) 854
SalI GTCGAC 1 cut(s) 546
SaqAI TTAA 1 cut(s) 33
SatI GCNGC 2 cut(s) 28, 527
Sau3AI GATC 3 cut(s) 232, 328, 730
Sau96I GGNCC 3 cut(s) 243, 430, 896
ScaI AGTACT 1 cut(s) 928
SchI GAGTC 4 cut(s) 156, 596, 857, 924
ScrFI CCNGG 2 cut(s) 410, 750
SfaNI GCATC 4 cut(s) 219, 258, 621, 745
SfuI TTCGAA 1 cut(s) 20
SinI GGWCC 2 cut(s) 243, 896
SmiMI CAYNNNNRTG 1 cut(s) 854
Sse9I AATT 2 cut(s) 76, 475
SsiI CCGC 2 cut(s) 247, 362
SspMI CTAG 2 cut(s) 506, 540
StyD4I CCNGG 2 cut(s) 408, 748
StyI CCWWGG 1 cut(s) 802
TaaI ACNGT 2 cut(s) 48, 896
TaqI TCGA 4 cut(s) 20, 547, 866, 913
TaqII GACCGA 1 cut(s) 455
TasI AATT 2 cut(s) 76, 475
TatI WGTACW 2 cut(s) 764, 926
TfiI GAWTC 2 cut(s) 745, 807
Tru1I TTAA 1 cut(s) 33
Tru9I TTAA 1 cut(s) 33
TscAI CASTG 1 cut(s) 747
TseFI GTSAC 1 cut(s) 346
TseI GCWGC 2 cut(s) 27, 526
Tsp45I GTSAC 1 cut(s) 346
TspDTI ATGAA 1 cut(s) 785
TspGWI ACGGA 1 cut(s) 60
TspRI CASTG 1 cut(s) 747
VpaK11BI GGWCC 2 cut(s) 243, 896
XcmI CCANNNNNNNNNTGG 1 cut(s) 135
XmiI GTMKAC 1 cut(s) 547
XspI CTAG 2 cut(s) 506, 540
ZrmI AGTACT 1 cut(s) 928
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.