Rroxscaffold_6G00390090

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0006260
Physical Location & Seq
Reverse (-)
4567321 .. 4569719
2399 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00390090.1

Sequence Viewer

Length: 582 bp
ATGATGACCATCTCTGGTCGCACCTCCTCTCCTCGGATTTCCCCCCTTGCCCCTCCTCATCCCTCTTCTTCCTCAATCACCTCTAAATCTCTCTATAAACTCAGGTTTGAGAGAGATAGGGATAAGAAAATAGCGGCCCATCAACGAGCGCTGTTGCGGAAGGAGAGCCAGATTATTGAACATTTAAGAAAGCTCCGGGACATGGAGAACCGATTGGCCCAAGAGACCCACAAAATGCGAGCGACTCTTGTTGACCTTTCCAATTTTCACCAGGTCAGGCAAGCTTCACTAGCATTGAATGTCTGGCAGCCAGAGATAATCAGGGGCCGACAAAAACAAATAGTGGAGCAATGTGTTGTACCGACTGAGTCTCGGCTCCATGCCCTTGAAATGGAGCTTAGGCTCTGCAAACAGCAGATTTCAGGGTTAGAAAAGGCGTATAAAGATGAGAAGCAAAGGCTTGGTTTGGCTGAAGAAGAGTTGCAATCGATTAGATATCACCCTTTACGAGATCATAAGCCACTATGTTCGGGGGACGCTCAATGTACAAGCAAAAGCAAAAAGTTGAAAAGATTTAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like

Protein Analysis

193

Amino Acids

22.43

Weight (kDa)

10.05

Isoelectric Point (pI)

52.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 134, 157
AcuI CTGAAG 1 cut(s) 492
AfaI GTAC 2 cut(s) 360, 547
AfeI AGCGCT 1 cut(s) 150
AfiI CCNNNNNNNGG 3 cut(s) 33, 202, 391
AgsI TTSAA 4 cut(s) 179, 298, 389, 568
AjnI CCWGG 1 cut(s) 270
AluBI AGCT 3 cut(s) 193, 284, 397
AluI AGCT 3 cut(s) 193, 284, 397
Alw26I GTCTC 2 cut(s) 218, 375
Aor51HI AGCGCT 1 cut(s) 150
AoxI GGCC 3 cut(s) 135, 216, 325
ApeKI GCWGC 1 cut(s) 307
AspLEI GCGC 1 cut(s) 151
AspS9I GGNCC 3 cut(s) 136, 217, 325
AsuC2I CCSGG 1 cut(s) 197
AsuHPI GGTGA 3 cut(s) 70, 260, 491
BbvI GCAGC 1 cut(s) 319
BccI CCATC 2 cut(s) 17, 147
BciT130I CCWGG 1 cut(s) 272
BcnI CCSGG 1 cut(s) 197
BcoDI GTCTC 2 cut(s) 218, 375
BfaI CTAG 1 cut(s) 290
BfoI RGCGCY 1 cut(s) 152
BisI GCNGC 2 cut(s) 135, 308
BlsI GCNGC 2 cut(s) 136, 309
Bme1390I CCNGG 2 cut(s) 197, 272
BmgT120I GGNCC 3 cut(s) 136, 217, 325
BmiI GGNNCC 2 cut(s) 326, 377
BmrFI CCNGG 2 cut(s) 197, 272
Bpu10I CCTNAGC 1 cut(s) 398
BpuMI CCSGG 1 cut(s) 197
Bsa29I ATCGAT 1 cut(s) 488
BsaBI GATNNNNATC 1 cut(s) 8
BsaI GGTCTC 1 cut(s) 218
BsaJI CCNNGG 1 cut(s) 32
BsaXI ACNNNNNCTCC 2 cut(s) 13, 43
Bsc4I CCNNNNNNNGG 3 cut(s) 33, 202, 391
Bse3DI GCAATG 1 cut(s) 356
Bse8I GATNNNNATC 1 cut(s) 8
BseBI CCWGG 1 cut(s) 272
BseCI ATCGAT 1 cut(s) 488
BseDI CCNNGG 1 cut(s) 32
BseGI GGATG 1 cut(s) 58
BseJI GATNNNNATC 1 cut(s) 8
BseLI CCNNNNNNNGG 3 cut(s) 33, 202, 391
BseMI GCAATG 1 cut(s) 356
BseMII CTCAG 2 cut(s) 115, 357
BseRI GAGGAG 3 cut(s) 16, 21, 45
BseXI GCAGC 1 cut(s) 319
BshFI GGCC 3 cut(s) 137, 218, 327
BshVI ATCGAT 1 cut(s) 488
BsiSI CCGG 1 cut(s) 196
BslFI GGGAC 2 cut(s) 212, 548
BslI CCNNNNNNNGG 3 cut(s) 33, 202, 391
BsmAI GTCTC 2 cut(s) 218, 375
BsmFI GGGAC 2 cut(s) 212, 548
BsnI GGCC 3 cut(s) 137, 218, 327
Bso31I GGTCTC 1 cut(s) 218
Bsp1407I TGTACA 1 cut(s) 545
Bsp143I GATC 1 cut(s) 511
BspACI CCGC 2 cut(s) 134, 157
BspANI GGCC 3 cut(s) 137, 218, 327
BspCNI CTCAG 2 cut(s) 114, 358
BspDI ATCGAT 1 cut(s) 488
BspLI GGNNCC 2 cut(s) 326, 377
BspTNI GGTCTC 1 cut(s) 218
BsrDI GCAATG 1 cut(s) 356
BsrGI TGTACA 1 cut(s) 545
BssECI CCNNGG 1 cut(s) 32
BssMI GATC 1 cut(s) 511
Bst2UI CCWGG 1 cut(s) 272
Bst6I CTCTTC 2 cut(s) 70, 471
BstAUI TGTACA 1 cut(s) 545
BstC8I GCNNGC 2 cut(s) 240, 282
BstDEI CTNAG 3 cut(s) 101, 366, 398
BstF5I GGATG 1 cut(s) 58
BstH2I RGCGCY 1 cut(s) 152
BstHHI GCGC 1 cut(s) 151
BstKTI GATC 1 cut(s) 514
BstMAI GTCTC 2 cut(s) 218, 375
BstMBI GATC 1 cut(s) 511
BstMWI GCNNNNNNNGC 1 cut(s) 290
BstNI CCWGG 1 cut(s) 272
BstSCI CCNGG 2 cut(s) 195, 270
BstV1I GCAGC 1 cut(s) 319
Bsu15I ATCGAT 1 cut(s) 488
BsuRI GGCC 3 cut(s) 137, 218, 327
BsuTUI ATCGAT 1 cut(s) 488
BtsCI GGATG 1 cut(s) 58
Cac8I GCNNGC 2 cut(s) 240, 282
CfoI GCGC 1 cut(s) 151
Cfr13I GGNCC 3 cut(s) 136, 217, 325
ClaI ATCGAT 1 cut(s) 488
CseI GACGC 1 cut(s) 545
CsiI ACCWGGT 1 cut(s) 270
Csp6I GTAC 2 cut(s) 359, 546
CviAII CATG 2 cut(s) 202, 380
CviQI GTAC 2 cut(s) 359, 546
DdeI CTNAG 3 cut(s) 101, 366, 398
DpnI GATC 1 cut(s) 513
DpnII GATC 1 cut(s) 511
Eam1104I CTCTTC 2 cut(s) 70, 471
EarI CTCTTC 2 cut(s) 70, 471
Eco31I GGTCTC 1 cut(s) 218
Eco32I GATATC 1 cut(s) 497
Eco47III AGCGCT 1 cut(s) 150
Eco57I CTGAAG 1 cut(s) 492
EcoRII CCWGG 1 cut(s) 270
EcoRV GATATC 1 cut(s) 497
FaeI CATG 2 cut(s) 205, 383
FaiI YATR 6 cut(s) 96, 203, 381, 441, 516, 526
FaqI GGGAC 2 cut(s) 212, 548
FatI CATG 2 cut(s) 201, 379
Fnu4HI GCNGC 2 cut(s) 135, 308
FokI GGATG 1 cut(s) 45
Fsp4HI GCNGC 2 cut(s) 135, 308
FspBI CTAG 1 cut(s) 290
GlaI GCGC 1 cut(s) 150
GluI GCNGC 2 cut(s) 135, 308
HaeII RGCGCY 1 cut(s) 152
HaeIII GGCC 3 cut(s) 137, 218, 327
HapII CCGG 1 cut(s) 196
HgaI GACGC 1 cut(s) 545
HhaI GCGC 1 cut(s) 151
Hin1II CATG 2 cut(s) 205, 383
Hin6I GCGC 1 cut(s) 149
HinP1I GCGC 1 cut(s) 149
HincII GTYRAC 1 cut(s) 253
HindII GTYRAC 1 cut(s) 253
HindIII AAGCTT 1 cut(s) 282
HinfI GANTC 2 cut(s) 244, 368
HpaII CCGG 1 cut(s) 196
HphI GGTGA 3 cut(s) 70, 260, 491
Hpy166II GTNNAC 1 cut(s) 253
Hpy188I TCNGA 1 cut(s) 36
Hpy8I GTNNAC 1 cut(s) 253
HpyAV CCTTC 1 cut(s) 154
HpyCH4V TGCA 2 cut(s) 408, 484
HpyF10VI GCNNNNNNNGC 1 cut(s) 290
HpyF3I CTNAG 3 cut(s) 101, 366, 398
Hsp92II CATG 2 cut(s) 205, 383
HspAI GCGC 1 cut(s) 149
Kzo9I GATC 1 cut(s) 511
LmnI GCTCC 4 cut(s) 198, 346, 381, 394
Lsp1109I GCAGC 1 cut(s) 319
MabI ACCWGGT 1 cut(s) 270
MaeI CTAG 1 cut(s) 290
MalI GATC 1 cut(s) 513
MboI GATC 1 cut(s) 511
MboII GAAGA 4 cut(s) 57, 60, 485, 488
MluCI AATT 1 cut(s) 262
MlyI GAGTC 2 cut(s) 238, 377
MnlI CCTC 8 cut(s) 34, 37, 42, 63, 66, 73, 82, 91
MseI TTAA 2 cut(s) 185, 576
MspI CCGG 1 cut(s) 196
MspR9I CCNGG 2 cut(s) 197, 272
MvaI CCWGG 1 cut(s) 272
MwoI GCNNNNNNNGC 1 cut(s) 290
NciI CCSGG 1 cut(s) 197
NdeII GATC 1 cut(s) 511
NlaIII CATG 2 cut(s) 205, 383
NlaIV GGNNCC 2 cut(s) 326, 377
NmeAIII GCCGAG 1 cut(s) 352
PflFI GACNNNGTC 1 cut(s) 367
PfoI TCCNGGA 1 cut(s) 195
PkrI GCNGC 2 cut(s) 136, 309
PleI GAGTC 2 cut(s) 238, 376
PpsI GAGTC 2 cut(s) 238, 376
Psp6I CCWGG 1 cut(s) 270
PspGI CCWGG 1 cut(s) 270
PspN4I GGNNCC 2 cut(s) 326, 377
PspPI GGNCC 3 cut(s) 136, 217, 325
PsyI GACNNNGTC 1 cut(s) 367
RsaI GTAC 2 cut(s) 360, 547
RsaNI GTAC 2 cut(s) 359, 546
SaqAI TTAA 2 cut(s) 185, 576
SatI GCNGC 2 cut(s) 135, 308
Sau3AI GATC 1 cut(s) 511
Sau96I GGNCC 3 cut(s) 136, 217, 325
SchI GAGTC 2 cut(s) 238, 377
ScrFI CCNGG 2 cut(s) 197, 272
SetI ASST 8 cut(s) 26, 83, 107, 195, 258, 276, 286, 399
SexAI ACCWGGT 1 cut(s) 270
Sse9I AATT 1 cut(s) 262
SsiI CCGC 2 cut(s) 134, 157
SspMI CTAG 1 cut(s) 290
StyD4I CCNGG 2 cut(s) 195, 270
TaqI TCGA 1 cut(s) 488
TasI AATT 1 cut(s) 262
TatI WGTACW 1 cut(s) 545
TauI GCSGC 1 cut(s) 137
Tru1I TTAA 2 cut(s) 185, 576
Tru9I TTAA 2 cut(s) 185, 576
TseI GCWGC 1 cut(s) 307
Tth111I GACNNNGTC 1 cut(s) 367
XspI CTAG 1 cut(s) 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.