Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005747.1

Orthogroup ID

OG0006260

Physical Location & Seq

Genomic Coordinates Reverse (-)

4499 .. 7099

Gene Structure 2601 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005747.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

atgtcagttctcccagacgagctctggaggcgagtcttcgaaatcggcgggttcagctacaaagacctctgctgtgtatctatcacctgcaggcgcttccgccgattatccgatgaggaccatctctggtcgcacctcctctgctcggatttcccccttgtcgctcctcatccctcttcttcctcagtcagctctaaatctctctataaactcaggtttgagagagatagggataagaaaatagcggcccatcaacgagcgctgttgcggaaggagagccagattattgaacatttaagaaagctccgggacatagagagccgattagcccaagagacccacaaaatgcgagggactcttgatgacctctccaattttcaccaggtcaggcaagcttcactagcattgaatgtctggcagccagagataattaggggccgacaaaaacaaatagtggagcaatgtgttgtaccgactgagtctcggctccatgcccttgaaatggagcttaggctgtgcaaacagcagatttcagggttagaaaaggcatataaagatgagaagcacaggcttggtttggctgaagaagagttgcaatcgatgagatatcaccctttacgagatcataggccactgagttcaggggacgctcaatgtactagcaaaagcaaaaagttgaaaagatgtaaggctcggctcggggcgcgacggagcagcagggcttgccggacggacgccaaggatcagacggagcggtctgcagtcggtggagtcgccggcgacggggttgctgctcgttgcagaaaagctgcagttgcaggtcgggttgctggtcagaacctggaaccccgacctcgaacgctgcccagaaccgtctgggatgcctccagcctccctcctgcaagccacgtgccgccgtcgctgcctggaacgccttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box-like

Protein Analysis

312

Amino Acids

35.42

Weight (kDa)

9.85

Isoelectric Point (pI)

59.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006260)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08710 AT1G08710
fragaria_vesca	FvH4_3g02594 FvH4_5g39040
malus_domestica	MD12G1014000.v1.1
prunus_persica	Prupe.7G018500_v2.0.a1 Prupe.7G018500_v2.0.a1 Prupe.7G018500_v2.0.a1 Prupe.7G018500_v2.0.a1 Prupe.7G018500_v2.0.a1 Prupe.7G018500_v2.0.a1 Prupe.7G018500_v2.0.a1 Prupe.7G018500_v2.0.a1 Prupe.7G018500_v2.0.a1
pyrus_communis	pycom12g01160
rosa_chinensis	RchiOBHm_Chr3g0495701
rosa_laevigata	RLG00000022593
rosa_multiflora	Rmu_co8418867.1_g000001 Rmu_sc0002977.1_g000008 Rmu_sc0005747.1_g000002
rosa_roxburghii	Rroxscaffold_6G00390090
rosa_rugosa	Rorug03G0275600
rosa_samantha	Rh3AG323200 Rh3BG358800 Rh3CG355400 Rh3DG358600
rosa_wichuraiana	Rw3G028250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	95
AasI	GACNNNNNNGTC	1 cut(s)	754
Acc36I	ACCTGC	2 cut(s)	95, 809
AccBSI	CCGCTC	1 cut(s)	754
AccII	CGCG	1 cut(s)	706
AciI	CCGC	6 cut(s)	48, 100, 245, 268, 754, 914
AclWI	GGATC	1 cut(s)	750
AcuI	CTGAAG	1 cut(s)	603
AcvI	CACGTG	1 cut(s)	910
AcyI	GRCGYC	1 cut(s)	735
AfaI	GTAC	2 cut(s)	471, 658
AfeI	AGCGCT	1 cut(s)	261
AfiI	CCNNNNNNNGG	3 cut(s)	145, 502, 783
AgsI	TTSAA	4 cut(s)	290, 409, 500, 679
AjnI	CCWGG	3 cut(s)	381, 840, 925
AluBI	AGCT	7 cut(s)	22, 57, 192, 304, 395, 508, 809
AluI	AGCT	7 cut(s)	22, 57, 192, 304, 395, 508, 809
Alw21I	GWGCWC	1 cut(s)	24
Alw26I	GTCTC	2 cut(s)	329, 486
AlwI	GGATC	1 cut(s)	750
AlwNI	CAGNNNCTG	1 cut(s)	841
Ama87I	CYCGRG	1 cut(s)	698
Aor51HI	AGCGCT	1 cut(s)	261
AoxI	GGCC	3 cut(s)	246, 436, 629
ApeKI	GCWGC	6 cut(s)	418, 714, 791, 809, 862, 922
AspLEI	GCGC	3 cut(s)	96, 262, 706
AspS9I	GGNCC	3 cut(s)	118, 247, 436
AsuC2I	CCSGG	1 cut(s)	308
AsuHPI	GGTGA	3 cut(s)	76, 371, 602
AsuII	TTCGAA	1 cut(s)	39
AvaI	CYCGRG	1 cut(s)	698
AvaII	GGWCC	1 cut(s)	118
BanII	GRGCYC	1 cut(s)	24
BbrPI	CACGTG	1 cut(s)	910
BbsI	GAAGAC	1 cut(s)	28
Bbv12I	GWGCWC	1 cut(s)	24
BbvI	GCAGC	6 cut(s)	430, 726, 778, 796, 849, 909
BccI	CCATC	2 cut(s)	129, 258
BceAI	ACGGC	1 cut(s)	901
BcgI	CGANNNNNNTGC	2 cut(s)	770, 804
BciT130I	CCWGG	3 cut(s)	383, 842, 927
BcnI	CCSGG	1 cut(s)	308
BcoDI	GTCTC	2 cut(s)	329, 486
BfaI	CTAG	2 cut(s)	401, 660
BfmI	CTRYAG	3 cut(s)	88, 759, 810
BfoI	RGCGCY	2 cut(s)	97, 263
BfuAI	ACCTGC	2 cut(s)	95, 809
BisI	GCNGC	8 cut(s)	246, 419, 715, 792, 810, 863, 914, 923
BlsI	GCNGC	8 cut(s)	247, 420, 716, 793, 811, 864, 915, 924
Bme1390I	CCNGG	4 cut(s)	308, 383, 842, 927
Bme18I	GGWCC	1 cut(s)	118
BmeT110I	CYCGRG	1 cut(s)	698
BmgT120I	GGNCC	3 cut(s)	118, 247, 436
BmiI	GGNNCC	3 cut(s)	437, 488, 846
BmrFI	CCNGG	4 cut(s)	308, 383, 842, 927
BmsI	GCATC	1 cut(s)	871
BpiI	GAAGAC	1 cut(s)	28
BpmI	CTGGAG	2 cut(s)	46, 871
Bpu10I	CCTNAGC	1 cut(s)	509
Bpu14I	TTCGAA	1 cut(s)	39
BpuMI	CCSGG	1 cut(s)	308
Bsa29I	ATCGAT	1 cut(s)	599
BsaAI	YACGTR	1 cut(s)	910
BsaHI	GRCGYC	1 cut(s)	735
BsaI	GGTCTC	1 cut(s)	329
BsaJI	CCNNGG	1 cut(s)	738
Bsc4I	CCNNNNNNNGG	3 cut(s)	145, 502, 783
Bse118I	RCCGGY	1 cut(s)	776
Bse3DI	GCAATG	1 cut(s)	467
BseBI	CCWGG	3 cut(s)	383, 842, 927
BseCI	ATCGAT	1 cut(s)	599
BseDI	CCNNGG	1 cut(s)	738
BseGI	GGATG	2 cut(s)	169, 886
BseLI	CCNNNNNNNGG	3 cut(s)	145, 502, 783
BseMI	GCAATG	1 cut(s)	467
BseMII	CTCAG	4 cut(s)	198, 226, 468, 626
BseRI	GAGGAG	2 cut(s)	128, 156
BseXI	GCAGC	6 cut(s)	430, 726, 778, 796, 849, 909
Bsh1236I	CGCG	1 cut(s)	706
BshFI	GGCC	3 cut(s)	248, 438, 631
BshVI	ATCGAT	1 cut(s)	599
BsiHKAI	GWGCWC	1 cut(s)	24
BsiHKCI	CYCGRG	1 cut(s)	698
BsiSI	CCGG	3 cut(s)	307, 727, 777
BslFI	GGGAC	3 cut(s)	323, 367, 659
BslI	CCNNNNNNNGG	3 cut(s)	145, 502, 783
BsmAI	GTCTC	2 cut(s)	329, 486
BsmFI	GGGAC	3 cut(s)	323, 367, 659
BsnI	GGCC	3 cut(s)	248, 438, 631
Bso31I	GGTCTC	1 cut(s)	329
BsoBI	CYCGRG	1 cut(s)	698
Bsp119I	TTCGAA	1 cut(s)	39
Bsp1286I	GDGCHC	1 cut(s)	24
Bsp143I	GATC	2 cut(s)	622, 742
BspACI	CCGC	6 cut(s)	48, 100, 245, 268, 754, 914
BspANI	GGCC	3 cut(s)	248, 438, 631
BspCNI	CTCAG	4 cut(s)	197, 225, 469, 627
BspDI	ATCGAT	1 cut(s)	599
BspFNI	CGCG	1 cut(s)	706
BspLI	GGNNCC	3 cut(s)	437, 488, 846
BspMAI	CTGCAG	3 cut(s)	92, 763, 814
BspMI	ACCTGC	2 cut(s)	95, 809
BspPI	GGATC	1 cut(s)	750
BspT104I	TTCGAA	1 cut(s)	39
BspTNI	GGTCTC	1 cut(s)	329
BsrBI	CCGCTC	1 cut(s)	754
BsrDI	GCAATG	1 cut(s)	467
BsrFI	RCCGGY	1 cut(s)	776
BssAI	RCCGGY	1 cut(s)	776
BssECI	CCNNGG	1 cut(s)	738
BssMI	GATC	2 cut(s)	622, 742
BssNI	GRCGYC	1 cut(s)	735
BssT1I	CCWWGG	1 cut(s)	738
Bst2UI	CCWGG	3 cut(s)	383, 842, 927
Bst4CI	ACNGT	1 cut(s)	874
Bst6I	CTCTTC	2 cut(s)	181, 582
BstACI	GRCGYC	1 cut(s)	735
BstAPI	GCANNNNNTGC	1 cut(s)	723
BstBAI	YACGTR	1 cut(s)	910
BstBI	TTCGAA	1 cut(s)	39
BstC8I	GCNNGC	5 cut(s)	92, 393, 724, 778, 904
BstDEI	CTNAG	6 cut(s)	184, 212, 477, 509, 635, 936
BstF5I	GGATG	2 cut(s)	169, 886
BstFNI	CGCG	1 cut(s)	706
BstH2I	RGCGCY	2 cut(s)	97, 263
BstHHI	GCGC	3 cut(s)	96, 262, 706
BstKTI	GATC	2 cut(s)	625, 745
BstMAI	GTCTC	2 cut(s)	329, 486
BstMBI	GATC	2 cut(s)	622, 742
BstMWI	GCNNNNNNNGC	9 cut(s)	28, 54, 401, 703, 723, 815, 919, 922, 931
BstNI	CCWGG	3 cut(s)	383, 842, 927
BstSCI	CCNGG	4 cut(s)	306, 381, 840, 925
BstSFI	CTRYAG	3 cut(s)	88, 759, 810
BstUI	CGCG	1 cut(s)	706
BstV1I	GCAGC	6 cut(s)	430, 726, 778, 796, 849, 909
BstV2I	GAAGAC	1 cut(s)	28
Bsu15I	ATCGAT	1 cut(s)	599
BsuRI	GGCC	3 cut(s)	248, 438, 631
BsuTUI	ATCGAT	1 cut(s)	599
BtsCI	GGATG	2 cut(s)	169, 886
BtsIMutI	CAGTG	1 cut(s)	632
BveI	ACCTGC	2 cut(s)	95, 809
Cac8I	GCNNGC	5 cut(s)	92, 393, 724, 778, 904
CaiI	CAGNNNCTG	1 cut(s)	841
CfoI	GCGC	3 cut(s)	96, 262, 706
Cfr10I	RCCGGY	1 cut(s)	776
Cfr13I	GGNCC	3 cut(s)	118, 247, 436
ClaI	ATCGAT	1 cut(s)	599
CseI	GACGC	2 cut(s)	656, 743
CsiI	ACCWGGT	1 cut(s)	381
Csp6I	GTAC	2 cut(s)	470, 657
CviAII	CATG	1 cut(s)	491
CviQI	GTAC	2 cut(s)	470, 657
DdeI	CTNAG	6 cut(s)	184, 212, 477, 509, 635, 936
DpnI	GATC	2 cut(s)	624, 744
DpnII	GATC	2 cut(s)	622, 742
DrdI	GACNNNNNNGTC	1 cut(s)	754
DseDI	GACNNNNNNGTC	1 cut(s)	754
Eam1104I	CTCTTC	2 cut(s)	181, 582
EarI	CTCTTC	2 cut(s)	181, 582
EciI	GGCGGA	1 cut(s)	89
Ecl136II	GAGCTC	1 cut(s)	22
Eco130I	CCWWGG	1 cut(s)	738
Eco24I	GRGCYC	1 cut(s)	24
Eco31I	GGTCTC	1 cut(s)	329
Eco32I	GATATC	1 cut(s)	608
Eco47I	GGWCC	1 cut(s)	118
Eco47III	AGCGCT	1 cut(s)	261
Eco53kI	GAGCTC	1 cut(s)	22
Eco57I	CTGAAG	1 cut(s)	603
Eco72I	CACGTG	1 cut(s)	910
Eco88I	CYCGRG	1 cut(s)	698
EcoICRI	GAGCTC	1 cut(s)	22
EcoRII	CCWGG	3 cut(s)	381, 840, 925
EcoRV	GATATC	1 cut(s)	608
EcoT14I	CCWWGG	1 cut(s)	738
EcoT38I	GRGCYC	1 cut(s)	24
ErhI	CCWWGG	1 cut(s)	738
FaeI	CATG	1 cut(s)	494
FaiI	YATR	6 cut(s)	207, 314, 492, 550, 552, 627
FaqI	GGGAC	3 cut(s)	323, 367, 659
FatI	CATG	1 cut(s)	490
FauI	CCCGC	1 cut(s)	41
Fnu4HI	GCNGC	8 cut(s)	246, 419, 715, 792, 810, 863, 914, 923
FokI	GGATG	2 cut(s)	156, 893
FriOI	GRGCYC	1 cut(s)	24
Fsp4HI	GCNGC	8 cut(s)	246, 419, 715, 792, 810, 863, 914, 923
FspBI	CTAG	2 cut(s)	401, 660
GlaI	GCGC	3 cut(s)	95, 261, 705
GluI	GCNGC	8 cut(s)	246, 419, 715, 792, 810, 863, 914, 923
GsuI	CTGGAG	2 cut(s)	46, 871
HaeII	RGCGCY	2 cut(s)	97, 263
HaeIII	GGCC	3 cut(s)	248, 438, 631
HapII	CCGG	3 cut(s)	307, 727, 777
HgaI	GACGC	2 cut(s)	656, 743
HhaI	GCGC	3 cut(s)	96, 262, 706
Hin1I	GRCGYC	1 cut(s)	735
Hin1II	CATG	1 cut(s)	494
Hin6I	GCGC	3 cut(s)	94, 260, 704
HinP1I	GCGC	3 cut(s)	94, 260, 704
HindIII	AAGCTT	1 cut(s)	393
HinfI	GANTC	4 cut(s)	33, 355, 479, 771
HpaII	CCGG	3 cut(s)	307, 727, 777
HphI	GGTGA	3 cut(s)	76, 371, 602
Hpy188I	TCNGA	4 cut(s)	112, 148, 747, 837
Hpy188III	TCNNGA	2 cut(s)	25, 359
Hpy99I	CGWCG	3 cut(s)	711, 785, 922
HpyAV	CCTTC	1 cut(s)	265
HpyCH4III	ACNGT	1 cut(s)	874
HpyCH4IV	ACGT	1 cut(s)	909
HpyCH4V	TGCA	8 cut(s)	90, 519, 595, 761, 801, 812, 818, 902
HpyF10VI	GCNNNNNNNGC	9 cut(s)	28, 54, 401, 703, 723, 815, 919, 922, 931
HpyF3I	CTNAG	6 cut(s)	184, 212, 477, 509, 635, 936
HpySE526I	ACGT	1 cut(s)	909
Hsp92I	GRCGYC	1 cut(s)	735
Hsp92II	CATG	1 cut(s)	494
HspAI	GCGC	3 cut(s)	94, 260, 704
KroI	GCCGGC	1 cut(s)	776
KroNI	GCCGGC	1 cut(s)	778
Kzo9I	GATC	2 cut(s)	622, 742
LmnI	GCTCC	7 cut(s)	169, 309, 457, 492, 505, 711, 751
Lsp1109I	GCAGC	6 cut(s)	430, 726, 778, 796, 849, 909
LweI	GCATC	1 cut(s)	871
MabI	ACCWGGT	1 cut(s)	381
MaeI	CTAG	2 cut(s)	401, 660
MaeII	ACGT	1 cut(s)	909
MalI	GATC	2 cut(s)	624, 744
MbiI	CCGCTC	1 cut(s)	754
MboI	GATC	2 cut(s)	622, 742
MboII	GAAGA	5 cut(s)	28, 168, 171, 596, 599
MhlI	GDGCHC	1 cut(s)	24
MluCI	AATT	2 cut(s)	373, 429
MlyI	GAGTC	4 cut(s)	42, 349, 488, 780
MreI	CGCCGGCG	1 cut(s)	776
MroNI	GCCGGC	1 cut(s)	776
MseI	TTAA	1 cut(s)	296
MspI	CCGG	3 cut(s)	307, 727, 777
MspR9I	CCNGG	4 cut(s)	308, 383, 842, 927
MvaI	CCWGG	3 cut(s)	383, 842, 927
MvnI	CGCG	1 cut(s)	706
MwoI	GCNNNNNNNGC	9 cut(s)	28, 54, 401, 703, 723, 815, 919, 922, 931
NaeI	GCCGGC	1 cut(s)	778
NciI	CCSGG	1 cut(s)	308
NdeII	GATC	2 cut(s)	622, 742
NgoMIV	GCCGGC	1 cut(s)	776
NlaIII	CATG	1 cut(s)	494
NlaIV	GGNNCC	3 cut(s)	437, 488, 846
NmeAIII	GCCGAG	2 cut(s)	463, 673
NspV	TTCGAA	1 cut(s)	39
PaqCI	CACCTGC	1 cut(s)	95
PdiI	GCCGGC	1 cut(s)	778
PflFI	GACNNNGTC	1 cut(s)	478
PfoI	TCCNGGA	1 cut(s)	306
PkrI	GCNGC	8 cut(s)	247, 420, 716, 793, 811, 864, 915, 924
PleI	GAGTC	4 cut(s)	41, 349, 487, 779
PmaCI	CACGTG	1 cut(s)	910
PmlI	CACGTG	1 cut(s)	910
PpsI	GAGTC	4 cut(s)	41, 349, 487, 779
Ppu21I	YACGTR	1 cut(s)	910
Psp124BI	GAGCTC	1 cut(s)	24
Psp6I	CCWGG	3 cut(s)	381, 840, 925
PspCI	CACGTG	1 cut(s)	910
PspGI	CCWGG	3 cut(s)	381, 840, 925
PspN4I	GGNNCC	3 cut(s)	437, 488, 846
PspPI	GGNCC	3 cut(s)	118, 247, 436
PstI	CTGCAG	3 cut(s)	92, 763, 814
PstNI	CAGNNNCTG	1 cut(s)	841
PsyI	GACNNNGTC	1 cut(s)	478
RsaI	GTAC	2 cut(s)	471, 658
RsaNI	GTAC	2 cut(s)	470, 657
SacI	GAGCTC	1 cut(s)	24
SaqAI	TTAA	1 cut(s)	296
SatI	GCNGC	8 cut(s)	246, 419, 715, 792, 810, 863, 914, 923
Sau3AI	GATC	2 cut(s)	622, 742
Sau96I	GGNCC	3 cut(s)	118, 247, 436
SbfI	CCTGCAGG	1 cut(s)	92
SchI	GAGTC	4 cut(s)	42, 349, 488, 780
ScrFI	CCNGG	4 cut(s)	308, 383, 842, 927
SdaI	CCTGCAGG	1 cut(s)	92
SduI	GDGCHC	1 cut(s)	24
SexAI	ACCWGGT	1 cut(s)	381
SfaNI	GCATC	1 cut(s)	871
SfcI	CTRYAG	3 cut(s)	88, 759, 810
SfuI	TTCGAA	1 cut(s)	39
SgrAI	CRCCGGYG	1 cut(s)	776
SinI	GGWCC	1 cut(s)	118
Sse8387I	CCTGCAGG	1 cut(s)	92
Sse9I	AATT	2 cut(s)	373, 429
SsiI	CCGC	6 cut(s)	48, 100, 245, 268, 754, 914
SspMI	CTAG	2 cut(s)	401, 660
SstI	GAGCTC	1 cut(s)	24
StyD4I	CCNGG	4 cut(s)	306, 381, 840, 925
StyI	CCWWGG	1 cut(s)	738
TaaI	ACNGT	1 cut(s)	874
TaiI	ACGT	1 cut(s)	912
TaqI	TCGA	3 cut(s)	39, 599, 856
TasI	AATT	2 cut(s)	373, 429
TatI	WGTACW	1 cut(s)	656
TauI	GCSGC	2 cut(s)	248, 916
Tru1I	TTAA	1 cut(s)	296
Tru9I	TTAA	1 cut(s)	296
TscAI	CASTG	1 cut(s)	639
TseI	GCWGC	6 cut(s)	418, 714, 791, 809, 862, 922
TspGWI	ACGGA	3 cut(s)	724, 746, 764
TspRI	CASTG	1 cut(s)	639
Tth111I	GACNNNGTC	1 cut(s)	478
VpaK11BI	GGWCC	1 cut(s)	118
XcmI	CCANNNNNNNNNTGG	1 cut(s)	21
XspI	CTAG	2 cut(s)	401, 660

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.