AT1G08960

Belongs to the Ca(2 ) cation antiporter (CaCA) (TC 2.A.19) family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
2879506 .. 2882234
2729 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G08960.1

Sequence Viewer

Length: 1641 bp
ATGGAATTGATTTCTTCTTCAACAATTGGAAACTCAGCTCTGTGTTTAACCCTAATCTCCATTCTCATCTTCTTCTTCCTCACTACAACCACCATTCCCACTTTCCCGGATCATCCTCTTCGTTCTCTTCTCGATGACTCCCAAATCACTACGAACAGTAGCTCAATCGTTAATCCCAAATCCTCTTGTGTCTCCTCTAGATCCCACGATAATGGCGGCGTCATCAACTATTTCTCCCTCCATTACTGTATCTTCAACGAAAACCTATTCTTCTCGATCCCAATATTGTCTCTTCTCATTCTTCTTCACTTTTACATACTCATTAAAACCGCTCAGACTCATTTCTCCACCGTCACTACAAAGCTCGCCGATCGTCTCAATCTCTCTCCAAGCATGGCTGCTGTGACTCTTTTAGCCTTAGGTAATGGCGCACCTGATGTCTTTGCCTCTGTTGCCGCCTTGCGTGGTGGTCAGTATCGAACCGGATTCGGAGCTATCTTATCCGCTGGAACTTTCGTCTCTGCCTTTGTAGTTGGGTTCGTTGCGATCTATGCAGCGCCGTTTCCGGTGGATGCTGCGTCATTTGTCAGAGATGTGCTTTTTTATTTGATTGCTGCTTTGTTCTTGTTCTATGTGTACTTGAGTGGTGAGATATTTGTGTGGCAAGCTATAGGGTTCGTTGGGTTTTATATATTCTTCGTTGGTTTCGTCTTCTGGATGGATTTTGGTACCAATGTTGAGAAAGGGAAAAGTATCAGTGAGGAAGAGAAGGATTTGTTGAGACTTCAGGATTGTGAGATTGCCGCAGGTTCTCTTGGGAGTTATAAAGCAGAGAAAGAACATCAATTTTCAGGAATTTTTCGGCTTTATGGAACGATCTCGAGGATGTGGGAAACTCCTGTATCAGTTCTTTTGAACCTTACCATCCCAAAACCTTCTCCTTCGGAATGGTCTAGGTTTTATCGCTCTGCCAACATTGTTTTCTGCCCTTTTGCCCTTTTATACACTTGCAACTCTTTTGTACAACTAAACCACCCAATTTCATTCCTCTTTCCAAACACCCATCTCCCGCTTTGGCTTGTTGTCCTCTTCATGACGTCTTCCCTAGCGTTCCTCCACTTCACAGTAGAAAAACAACCACCAAAAACCGAGCAACTGCCGGTCATTGTTGTAGCTTTCATAATGAGTGTTTTCTGGATATCAACAATTGCTGGTGAGCTCCTTAACTGCTTGGCTGCGCTTGGAACCCTCCTTAAACTGCCTCCGGCGCTCCTTGGCCTAACCGTTCTTGCTTGGGGAAACTCGGTTGGTGACCTAGTTGCTGACGTGGCAGTTGCAAAGGCAGGTAGACCAGCAATGGCTATGGCCGGTTGTTTTGCAGGTCCAATGTTTAACATGCTTGTTGGACTTGGATCGGCCTTGGTGATGCAAACAGCTAATGTATATCCAGACGCTTACAAACTTGGATTCCATGTAGGTATTGTGATAGCTTTCGTCTTCTTGTTGCTTAGTCTAATGGGATCTCTGTTGGTAATAACCTGGTCTAGATTCCGAGTTCCGAGATTCTGGGGGATCTGTCTTGTTGGACTGTATGTTGCTTTCACATTTGTTAGTTTGATCATCGCCAGCGTTTCAACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

546

Amino Acids

59.8

Weight (kDa)

7.12

Isoelectric Point (pI)

32.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Na_Ca_ex PF01699 97 - 239 8.4e-24 Sodium/calcium exchanger protein
Na_Ca_ex PF01699 390 - 539 2.6e-29 Sodium/calcium exchanger protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012048)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 825
AatII GACGTC 1 cut(s) 1100
Acc36I ACCTGC 3 cut(s) 797, 1334, 1370
Acc65I GGTACC 1 cut(s) 728
AccB1I GGYRCC 1 cut(s) 728
AccBSI CCGCTC 1 cut(s) 332
AccI GTMKAC 1 cut(s) 1348
AciI CCGC 6 cut(s) 216, 330, 456, 504, 804, 1070
AclWI GGATC 6 cut(s) 117, 195, 271, 1420, 1528, 1580
AcoI YGGCCR 1 cut(s) 1365
AcsI RAATTY 1 cut(s) 855
AcuI CTGAAG 1 cut(s) 770
AcyI GRCGYC 2 cut(s) 219, 1097
AfaI GTAC 3 cut(s) 638, 730, 1023
AgsI TTSAA 4 cut(s) 21, 256, 916, 1635
AjiI CACGTC 1 cut(s) 1327
AjnI CCWGG 1 cut(s) 1538
AjuI GAANNNNNNNTTGG 2 cut(s) 965, 997
AluBI AGCT 9 cut(s) 38, 162, 364, 494, 668, 1175, 1219, 1436, 1490
AluI AGCT 9 cut(s) 38, 162, 364, 494, 668, 1175, 1219, 1436, 1490
Alw21I GWGCWC 1 cut(s) 1221
Alw26I GTCTC 5 cut(s) 196, 294, 380, 523, 775
AlwI GGATC 6 cut(s) 117, 195, 271, 1420, 1528, 1580
Ama87I CYCGRG 1 cut(s) 880
AoxI GGCC 3 cut(s) 1276, 1365, 1416
ApeKI GCWGC 5 cut(s) 398, 554, 575, 614, 1235
ApoI RAATTY 1 cut(s) 855
Asp718I GGTACC 1 cut(s) 728
AspLEI GCGC 4 cut(s) 431, 559, 1240, 1270
AspS9I GGNCC 1 cut(s) 1382
AsuC2I CCSGG 1 cut(s) 107
AsuHPI GGTGA 4 cut(s) 659, 1226, 1322, 1435
AvaI CYCGRG 1 cut(s) 880
AvaII GGWCC 1 cut(s) 1382
AxyI CCTNAGG 1 cut(s) 418
BaeI ACNNNNGTAYC 4 cut(s) 720, 753, 885, 918
BanI GGYRCC 1 cut(s) 728
BanII GRGCYC 1 cut(s) 1221
BbsI GAAGAC 3 cut(s) 703, 1092, 1489
Bbv12I GWGCWC 1 cut(s) 1221
BbvI GCAGC 5 cut(s) 385, 562, 566, 601, 1222
BccI CCATC 3 cut(s) 712, 932, 1071
BceAI ACGGC 1 cut(s) 544
BciT130I CCWGG 1 cut(s) 1540
BclI TGATCA 1 cut(s) 1617
BcnI CCSGG 1 cut(s) 107
BcoDI GTCTC 5 cut(s) 196, 294, 380, 523, 775
BfaI CTAG 5 cut(s) 198, 954, 1106, 1316, 1545
BfmI CTRYAG 1 cut(s) 669
BfoI RGCGCY 2 cut(s) 560, 1271
BfuAI ACCTGC 3 cut(s) 797, 1334, 1370
BisI GCNGC 8 cut(s) 217, 399, 456, 555, 576, 615, 804, 1236
BlsI GCNGC 8 cut(s) 218, 400, 457, 556, 577, 616, 805, 1237
Bme1390I CCNGG 2 cut(s) 107, 1540
Bme18I GGWCC 1 cut(s) 1382
BmeT110I CYCGRG 1 cut(s) 880
BmgBI CACGTC 1 cut(s) 1327
BmgT120I GGNCC 1 cut(s) 1382
BmiI GGNNCC 2 cut(s) 730, 1246
BmrFI CCNGG 2 cut(s) 107, 1540
BmsI GCATC 2 cut(s) 562, 1416
BpiI GAAGAC 3 cut(s) 703, 1092, 1489
BpuEI CTTGAG 1 cut(s) 661
BpuMI CCSGG 1 cut(s) 107
BsaHI GRCGYC 2 cut(s) 219, 1097
BsaJI CCNNGG 2 cut(s) 1273, 1419
BsaWI WCCGGW 2 cut(s) 482, 565
BsaXI ACNNNNNCTCC 2 cut(s) 218, 248
Bse118I RCCGGY 2 cut(s) 1159, 1367
Bse21I CCTNAGG 1 cut(s) 418
Bse3DI GCAATG 1 cut(s) 1362
BseBI CCWGG 1 cut(s) 1540
BseDI CCNNGG 2 cut(s) 1273, 1419
BseGI GGATG 5 cut(s) 112, 577, 723, 891, 924
BseMI GCAATG 1 cut(s) 1362
BseMII CTCAG 2 cut(s) 48, 347
BseRI GAGGAG 1 cut(s) 184
BseXI GCAGC 5 cut(s) 385, 562, 566, 601, 1222
Bsh1285I CGRYCG 1 cut(s) 373
BshFI GGCC 3 cut(s) 1278, 1367, 1418
BshNI GGYRCC 1 cut(s) 728
BsiEI CGRYCG 1 cut(s) 373
BsiHKAI GWGCWC 1 cut(s) 1221
BsiHKCI CYCGRG 1 cut(s) 880
BsiSI CCGG 6 cut(s) 107, 483, 566, 1160, 1265, 1368
BsmAI GTCTC 5 cut(s) 196, 294, 380, 523, 775
BsmBI CGTCTC 2 cut(s) 380, 523
BsnI GGCC 3 cut(s) 1278, 1367, 1418
BsoBI CYCGRG 1 cut(s) 880
Bsp1286I GDGCHC 1 cut(s) 1221
Bsp1407I TGTACA 1 cut(s) 1021
BspACI CCGC 6 cut(s) 216, 330, 456, 504, 804, 1070
BspANI GGCC 3 cut(s) 1278, 1367, 1418
BspCNI CTCAG 2 cut(s) 47, 346
BspHI TCATGA 1 cut(s) 1092
BspLI GGNNCC 2 cut(s) 730, 1246
BspMI ACCTGC 3 cut(s) 797, 1334, 1370
BspPI GGATC 6 cut(s) 117, 195, 271, 1420, 1528, 1580
BspT107I GGYRCC 1 cut(s) 728
BsrBI CCGCTC 1 cut(s) 332
BsrDI GCAATG 1 cut(s) 1362
BsrFI RCCGGY 2 cut(s) 1159, 1367
BsrGI TGTACA 1 cut(s) 1021
BssAI RCCGGY 2 cut(s) 1159, 1367
BssECI CCNNGG 2 cut(s) 1273, 1419
BssNI GRCGYC 2 cut(s) 219, 1097
BssT1I CCWWGG 2 cut(s) 1273, 1419
Bst2UI CCWGG 1 cut(s) 1540
Bst4CI ACNGT 6 cut(s) 158, 248, 352, 1126, 1285, 1590
Bst6I CTCTTC 5 cut(s) 123, 132, 297, 759, 1094
BstACI GRCGYC 2 cut(s) 219, 1097
BstAUI TGTACA 1 cut(s) 1021
BstC8I GCNNGC 3 cut(s) 366, 666, 1627
BstDEI CTNAG 4 cut(s) 34, 333, 418, 1508
BstEII GGTNACC 1 cut(s) 1310
BstF5I GGATG 5 cut(s) 112, 577, 723, 891, 924
BstH2I RGCGCY 2 cut(s) 560, 1271
BstHHI GCGC 4 cut(s) 431, 559, 1240, 1270
BstMAI GTCTC 5 cut(s) 196, 294, 380, 523, 775
BstMCI CGRYCG 1 cut(s) 373
BstMWI GCNNNNNNNGC 4 cut(s) 452, 551, 1267, 1328
BstNI CCWGG 1 cut(s) 1540
BstNSI RCATGY 1 cut(s) 1399
BstPI GGTNACC 1 cut(s) 1310
BstSCI CCNGG 2 cut(s) 105, 1538
BstSFI CTRYAG 1 cut(s) 669
BstV1I GCAGC 5 cut(s) 385, 562, 566, 601, 1222
BstV2I GAAGAC 3 cut(s) 703, 1092, 1489
BstX2I RGATCY 3 cut(s) 200, 1520, 1572
BstXI CCANNNNNNTGG 1 cut(s) 212
BstYI RGATCY 3 cut(s) 200, 1520, 1572
Bsu36I CCTNAGG 1 cut(s) 418
BsuRI GGCC 3 cut(s) 1278, 1367, 1418
BtgZI GCGATG 1 cut(s) 1606
BtrI CACGTC 1 cut(s) 1327
BtsCI GGATG 5 cut(s) 112, 577, 723, 891, 924
BtsIMutI CAGTG 1 cut(s) 763
BveI ACCTGC 3 cut(s) 797, 1334, 1370
Cac8I GCNNGC 3 cut(s) 366, 666, 1627
CciI TCATGA 1 cut(s) 1092
CfoI GCGC 4 cut(s) 431, 559, 1240, 1270
Cfr10I RCCGGY 2 cut(s) 1159, 1367
Cfr13I GGNCC 1 cut(s) 1382
CseI GACGC 3 cut(s) 208, 567, 1460
CsiI ACCWGGT 1 cut(s) 1538
Csp6I GTAC 3 cut(s) 637, 729, 1022
CviAII CATG 4 cut(s) 394, 1093, 1396, 1472
CviQI GTAC 3 cut(s) 637, 729, 1022
DdeI CTNAG 4 cut(s) 34, 333, 418, 1508
EaeI YGGCCR 1 cut(s) 1365
Eam1104I CTCTTC 5 cut(s) 123, 132, 297, 759, 1094
EarI CTCTTC 5 cut(s) 123, 132, 297, 759, 1094
Ecl136II GAGCTC 1 cut(s) 1219
Eco130I CCWWGG 2 cut(s) 1273, 1419
Eco24I GRGCYC 1 cut(s) 1221
Eco32I GATATC 1 cut(s) 1200
Eco47I GGWCC 1 cut(s) 1382
Eco53kI GAGCTC 1 cut(s) 1219
Eco57I CTGAAG 1 cut(s) 770
Eco81I CCTNAGG 1 cut(s) 418
Eco88I CYCGRG 1 cut(s) 880
Eco91I GGTNACC 1 cut(s) 1310
EcoICRI GAGCTC 1 cut(s) 1219
EcoO65I GGTNACC 1 cut(s) 1310
EcoRII CCWGG 1 cut(s) 1538
EcoRV GATATC 1 cut(s) 1200
EcoT14I CCWWGG 2 cut(s) 1273, 1419
EcoT38I GRGCYC 1 cut(s) 1221
ErhI CCWWGG 2 cut(s) 1273, 1419
Esp3I CGTCTC 2 cut(s) 380, 523
FaeI CATG 4 cut(s) 397, 1096, 1399, 1475
FatI CATG 4 cut(s) 393, 1092, 1395, 1471
FauI CCCGC 1 cut(s) 1077
FbaI TGATCA 1 cut(s) 1617
FblI GTMKAC 1 cut(s) 1348
Fnu4HI GCNGC 8 cut(s) 217, 399, 456, 555, 576, 615, 804, 1236
FokI GGATG 5 cut(s) 99, 584, 730, 898, 911
FriOI GRGCYC 1 cut(s) 1221
Fsp4HI GCNGC 8 cut(s) 217, 399, 456, 555, 576, 615, 804, 1236
FspBI CTAG 5 cut(s) 198, 954, 1106, 1316, 1545
GlaI GCGC 4 cut(s) 430, 558, 1239, 1269
GluI GCNGC 8 cut(s) 217, 399, 456, 555, 576, 615, 804, 1236
HaeII RGCGCY 2 cut(s) 560, 1271
HaeIII GGCC 3 cut(s) 1278, 1367, 1418
HapII CCGG 6 cut(s) 107, 483, 566, 1160, 1265, 1368
HgaI GACGC 3 cut(s) 208, 567, 1460
HhaI GCGC 4 cut(s) 431, 559, 1240, 1270
Hin1I GRCGYC 2 cut(s) 219, 1097
Hin1II CATG 4 cut(s) 397, 1096, 1399, 1475
Hin6I GCGC 4 cut(s) 429, 557, 1238, 1268
HinP1I GCGC 4 cut(s) 429, 557, 1238, 1268
HinfI GANTC 7 cut(s) 137, 337, 406, 486, 1467, 1548, 1563
HpaII CCGG 6 cut(s) 107, 483, 566, 1160, 1265, 1368
HphI GGTGA 4 cut(s) 659, 1226, 1322, 1435
Hpy166II GTNNAC 2 cut(s) 637, 1349
Hpy188I TCNGA 6 cut(s) 336, 491, 590, 946, 1553, 1560
Hpy8I GTNNAC 2 cut(s) 637, 1349
HpyAV CCTTC 3 cut(s) 763, 945, 951
HpyCH4III ACNGT 6 cut(s) 158, 248, 352, 1126, 1285, 1590
HpyCH4IV ACGT 2 cut(s) 1097, 1326
HpyCH4V TGCA 5 cut(s) 554, 1011, 1337, 1379, 1429
HpyF10VI GCNNNNNNNGC 4 cut(s) 452, 551, 1267, 1328
HpyF3I CTNAG 4 cut(s) 34, 333, 418, 1508
HpySE526I ACGT 2 cut(s) 1097, 1326
Hsp92I GRCGYC 2 cut(s) 219, 1097
Hsp92II CATG 4 cut(s) 397, 1096, 1399, 1475
HspAI GCGC 4 cut(s) 429, 557, 1238, 1268
KpnI GGTACC 1 cut(s) 732
Ksp22I TGATCA 1 cut(s) 1617
LmnI GCTCC 3 cut(s) 491, 1224, 1275
Lsp1109I GCAGC 5 cut(s) 385, 562, 566, 601, 1222
LweI GCATC 2 cut(s) 562, 1416
MabI ACCWGGT 1 cut(s) 1538
MaeI CTAG 5 cut(s) 198, 954, 1106, 1316, 1545
MaeII ACGT 2 cut(s) 1097, 1326
MaeIII GTNAC 3 cut(s) 352, 403, 1310
MbiI CCGCTC 1 cut(s) 332
MfeI CAATTG 2 cut(s) 24, 1206
MflI RGATCY 3 cut(s) 200, 1520, 1572
MhlI GDGCHC 1 cut(s) 1221
MluCI AATT 6 cut(s) 5, 24, 845, 855, 1038, 1206
MlyI GAGTC 3 cut(s) 131, 331, 400
MmeI TCCRAC 2 cut(s) 1384, 1564
MseI TTAA 6 cut(s) 47, 171, 324, 1224, 1254, 1392
MslI CAYNNNNRTG 1 cut(s) 210
MspA1I CMGCKG 1 cut(s) 506
MspI CCGG 6 cut(s) 107, 483, 566, 1160, 1265, 1368
MspR9I CCNGG 2 cut(s) 107, 1540
MunI CAATTG 2 cut(s) 24, 1206
MvaI CCWGG 1 cut(s) 1540
MwoI GCNNNNNNNGC 4 cut(s) 452, 551, 1267, 1328
NciI CCSGG 1 cut(s) 107
NlaIII CATG 4 cut(s) 397, 1096, 1399, 1475
NlaIV GGNNCC 2 cut(s) 730, 1246
NmuCI GTSAC 3 cut(s) 352, 403, 1310
NspI RCATGY 1 cut(s) 1399
PaeR7I CTCGAG 1 cut(s) 880
PagI TCATGA 1 cut(s) 1092
PcsI WCGNNNNNNNCGW 1 cut(s) 705
PfeI GAWTC 4 cut(s) 486, 1467, 1548, 1563
PfoI TCCNGGA 1 cut(s) 105
PkrI GCNGC 8 cut(s) 218, 400, 457, 556, 577, 616, 805, 1237
Ple19I CGATCG 1 cut(s) 373
PleI GAGTC 3 cut(s) 131, 331, 400
PpsI GAGTC 3 cut(s) 131, 331, 400
PsiI TTATAA 1 cut(s) 825
Psp124BI GAGCTC 1 cut(s) 1221
Psp6I CCWGG 1 cut(s) 1538
PspEI GGTNACC 1 cut(s) 1310
PspGI CCWGG 1 cut(s) 1538
PspN4I GGNNCC 2 cut(s) 730, 1246
PspPI GGNCC 1 cut(s) 1382
PsuI RGATCY 3 cut(s) 200, 1520, 1572
PvuI CGATCG 1 cut(s) 373
RsaI GTAC 3 cut(s) 638, 730, 1023
RsaNI GTAC 3 cut(s) 637, 729, 1022
RseI CAYNNNNRTG 1 cut(s) 210
SacI GAGCTC 1 cut(s) 1221
SaqAI TTAA 6 cut(s) 47, 171, 324, 1224, 1254, 1392
SatI GCNGC 8 cut(s) 217, 399, 456, 555, 576, 615, 804, 1236
Sau96I GGNCC 1 cut(s) 1382
SchI GAGTC 3 cut(s) 131, 331, 400
ScrFI CCNGG 2 cut(s) 107, 1540
SduI GDGCHC 1 cut(s) 1221
SexAI ACCWGGT 1 cut(s) 1538
SfaNI GCATC 2 cut(s) 562, 1416
SfcI CTRYAG 1 cut(s) 669
Sfr274I CTCGAG 1 cut(s) 880
SinI GGWCC 1 cut(s) 1382
SlaI CTCGAG 1 cut(s) 880
SmiMI CAYNNNNRTG 1 cut(s) 210
SmlI CTYRAG 2 cut(s) 640, 880
SmoI CTYRAG 2 cut(s) 640, 880
Sse9I AATT 6 cut(s) 5, 24, 845, 855, 1038, 1206
SsiI CCGC 6 cut(s) 216, 330, 456, 504, 804, 1070
SspI AATATT 1 cut(s) 285
SspMI CTAG 5 cut(s) 198, 954, 1106, 1316, 1545
SstI GAGCTC 1 cut(s) 1221
StyD4I CCNGG 2 cut(s) 105, 1538
StyI CCWWGG 2 cut(s) 1273, 1419
TaaI ACNGT 6 cut(s) 158, 248, 352, 1126, 1285, 1590
TaiI ACGT 2 cut(s) 1100, 1329
TaqI TCGA 4 cut(s) 132, 275, 478, 881
TasI AATT 6 cut(s) 5, 24, 845, 855, 1038, 1206
TatI WGTACW 2 cut(s) 636, 1021
TauI GCSGC 3 cut(s) 219, 458, 806
TfiI GAWTC 4 cut(s) 486, 1467, 1548, 1563
Tru1I TTAA 6 cut(s) 47, 171, 324, 1224, 1254, 1392
Tru9I TTAA 6 cut(s) 47, 171, 324, 1224, 1254, 1392
TscAI CASTG 1 cut(s) 763
TseFI GTSAC 3 cut(s) 352, 403, 1310
TseI GCWGC 5 cut(s) 398, 554, 575, 614, 1235
Tsp45I GTSAC 3 cut(s) 352, 403, 1310
TspDTI ATGAA 3 cut(s) 1032, 1081, 1168
TspRI CASTG 1 cut(s) 763
VpaK11BI GGWCC 1 cut(s) 1382
XapI RAATTY 1 cut(s) 855
XbaI TCTAGA 2 cut(s) 197, 1544
XceI RCATGY 1 cut(s) 1399
XhoI CTCGAG 1 cut(s) 880
XmiI GTMKAC 1 cut(s) 1348
XspI CTAG 5 cut(s) 198, 954, 1106, 1316, 1545
ZraI GACGTC 1 cut(s) 1098
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.