Rh3DG060200

Belongs to the Ca(2 ) cation antiporter (CaCA) (TC 2.A.19) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0012048
Physical Location & Seq
Forward (+)
4067992 .. 4071583
3592 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG060200.1

Sequence Viewer

Length: 1617 bp
ATGGCCATCCTCTCTTCCTTTCAAACCTTCACTCTCTCCCTAACACTCCTCTCCATCTTCCTCTTCTTCCTCCTCCTCCTCACTCCCCCAACTTCCACTTCCCCAAACTACCCCTCCCCTTTCCCCCTAACCCCCCACAGGTCCCTCCTCCAAACCCCCTCCTCCTGCTCCTCCAATGGCCTCTTCAACTACCTCTGCCTCTTCCCCCAAAACCCTAGCCTCTCTCTCTCCTCCCTCTCTCTCATCCTCCTCCTCCTCTTCTACCTCCTCATCAAAACCGCCCAGGATCACTTCTCCCTCGTCACCACCAAGCTCACCTTCGCCCTCAACCTGACGCCCTCCATGGCCGCCGTCACCCTCCTCGCCCTCGGCAACGGCGCCCCCGACGTCTTCGCCTCCCTCGCCGCCGTCCGCCGAGGCAACTACCGCACCGGCTTCGGCGCCATCCTCTCCGCCGGCACCTTCGTCTCCGCCTTCGTCGTCGGCTTCGTCGCGATCTACGCCGCGCCCTTCTCCCTCACCCCGGCCACGTTCGTCAGGGACGTCATGTTCTACCTGATCTCGGCCACGTTTCTGTTCTACGTGTATCTGAGCGCCGAGATTTATCTGTGGCAGGCGGTGGGGTTCGTCGGGTTTTACTTGTTCTTTGTGGGGTTTGTGTTCTGGATGGACTTGGGGTTGGGCGGAGGAGGAGGAGGAGGAGCAGGGAAGAGGAGCCGGAGTGAGGTGGCGGTGGGTGCTGAGAGTGAAATGCACAAGGGCTTTGTGGAATTCGATTGCGAGATCGGAGAAGTTGAGAAGAGATCAGAGGAGGGGAAGCCGAGTTTCGGGGTCCGGCGAGCTCTGGAAATGGTCTCAAAAGTATGGGAGGTTCCAGTCTCAATTCTTCTGAAGCTGACAATTCCACAAGCTGCCCCGTCGGAATGGAGTAGATTCTACACATCAGCCAATATTGCTCTATGCCCTCTAGCACTTCTATATTCTTGCAACTCGTTCATGGAATTCAGTCATCCTGTAGCTTTTCTTCTTTCCAACACCCATCTTCCACTATGGTTTGTTGTATTCTTGGCAAGCTCCTCTCTTGCACTTCTTCATTATATAATAGAGAAAGAGCCCCCCAAAACTGAGCAAATTCCTGTATTGCTTATAGCATTTGTTATGAGTGTCTTTTGGATATCCACTACTGCTGGAGAATTGTTGAACTGCCTTGCTGCACTTGGAGCACTTCTGGAGTTGCCACCAGCACTTCTTGGGCTTACGGTTCTTGCCTGGGGAAATTCTGTGGGGGATCTTGTTGCTGATGTGGCACTTGCCAAGGCAGGCCACCCTGCATTGGCCATGGCGGGGTGCTTTGCCGGGCCAATGTTTAACATGCTTGTAGGCCTTGGAACAGCGTTGGTGATACAGACCTCCAATGTTTATCCGGAAGCGTATGAGCTCCAGTTCCATGTGGGTATCGTGATTGCATTTGTGTTCTTGCTTTTGAGCCTGATGGGTTCTCTATTGGTGATCACATGGTGCAGATTCCGGGTGCCTAGGTTCTGGGGGTTCTGTCTTGTTGGTCTCTATGTTATCTTCATGGCAGTTAGCTTACTGATTGCCAAGTTTTCCGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003700 GO:0003712 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006355 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006814 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008324 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009889 GO:0009987 GO:0010029 GO:0010033 GO:0010099 GO:0010228 GO:0010468 GO:0010476 GO:0010556 GO:0015075 GO:0015077 GO:0015079 GO:0015081 GO:0015318 GO:0015672 GO:0016020 GO:0019219 GO:0019222 GO:0022414 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0034220 GO:0034399 GO:0035725 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046873 GO:0048518 GO:0048571 GO:0048573 GO:0048574 GO:0048580 GO:0048582 GO:0048583 GO:0048584 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051179 GO:0051234 GO:0051239 GO:0051240 GO:0051252 GO:0051716 GO:0055085 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071804 GO:0071805 GO:0071944 GO:0080090 GO:0097305 GO:0097306 GO:0098655 GO:0098660 GO:0098662 GO:0140110 GO:1900140 GO:1901700 GO:1901701 GO:1903506 GO:2000026 GO:2000030 GO:2000112 GO:2000306 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Na_Ca_ex

Protein Analysis

538

Amino Acids

58.4

Weight (kDa)

6.45

Isoelectric Point (pI)

45.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Na_Ca_ex PF01699 80 - 222 5.7e-20 Sodium/calcium exchanger protein
Na_Ca_ex PF01699 381 - 531 2.5e-29 Sodium/calcium exchanger protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012048)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08960
fragaria_vesca FvH4_6g05530 FvH4_6g05530 FvH4_6g05530
malus_domestica MD04G1207600.v1.1 MD12G1221900.v1.1
prunus_persica Prupe.6G328600_v2.0.a1
pyrus_communis pycom04g18380 pycom12g20800
rosa_chinensis RchiOBHm_Chr3g0454301
rosa_laevigata RLG00000025464
rosa_multiflora Rmu_sc0001340.1_g000003
rosa_roxburghii Rroxscaffold_165G00437120
rosa_rugosa Rorug02G0654100
rosa_samantha Rh3AG058000 Rh3BG059700 Rh3CG058900 Rh3DG060200
rosa_wichuraiana Rw3G004440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 390, 546
AccB1I GGYRCC 4 cut(s) 377, 440, 458, 1531
AccII CGCG 2 cut(s) 494, 506
AccIII TCCGGA 1 cut(s) 1423
AclWI GGATC 2 cut(s) 294, 1296
AcoI YGGCCR 5 cut(s) 3, 345, 525, 564, 1335
AcsI RAATTY 4 cut(s) 770, 1001, 1131, 1276
AcuI CTGAAG 1 cut(s) 911
AcyI GRCGYC 5 cut(s) 335, 378, 387, 441, 543
AdeI CACNNNGTG 1 cut(s) 1518
AfiI CCNNNNNNNGG 7 cut(s) 138, 523, 562, 724, 827, 1333, 1344
AflIII ACRYGT 1 cut(s) 582
AgsI TTSAA 3 cut(s) 23, 187, 1201
AjnI CCWGG 2 cut(s) 282, 1268
AjuI GAANNNNNNNTTGG 6 cut(s) 82, 114, 167, 199, 302, 334
AloI GAACNNNNNNTCC 2 cut(s) 533, 565
AluBI AGCT 8 cut(s) 313, 842, 895, 911, 1019, 1074, 1438, 1590
AluI AGCT 8 cut(s) 313, 842, 895, 911, 1019, 1074, 1438, 1590
Alw21I GWGCWC 3 cut(s) 844, 1225, 1440
Alw26I GTCTC 4 cut(s) 472, 859, 883, 1568
AlwI GGATC 2 cut(s) 294, 1296
Aor13HI TCCGGA 1 cut(s) 1423
AoxI GGCC 9 cut(s) 3, 178, 345, 525, 564, 1321, 1335, 1358, 1381
ApeKI GCWGC 2 cut(s) 911, 1211
ApoI RAATTY 4 cut(s) 770, 1001, 1131, 1276
AspA2I CCTAGG 1 cut(s) 1535
AspLEI GCGC 4 cut(s) 380, 443, 508, 596
AspS9I GGNCC 3 cut(s) 141, 832, 1358
AsuC2I CCSGG 4 cut(s) 524, 1357, 1529, 1612
AsuHPI GGTGA 6 cut(s) 295, 307, 346, 511, 1411, 1519
AvaII GGWCC 2 cut(s) 141, 832
AvrII CCTAGG 1 cut(s) 1535
BalI TGGCCA 2 cut(s) 5, 1337
BanI GGYRCC 4 cut(s) 377, 440, 458, 1531
BanII GRGCYC 3 cut(s) 844, 1116, 1440
BarI GAAGNNNNNNTAC 2 cut(s) 1008, 1040
BbsI GAAGAC 1 cut(s) 382
Bbv12I GWGCWC 3 cut(s) 844, 1225, 1440
BbvI GCAGC 2 cut(s) 898, 1198
BccI CCATC 6 cut(s) 14, 62, 452, 661, 1047, 1486
BceAI ACGGC 3 cut(s) 335, 391, 392
BcgI CGANNNNNNTGC 2 cut(s) 418, 452
BciT130I CCWGG 2 cut(s) 284, 1270
BclI TGATCA 1 cut(s) 1509
BcnI CCSGG 4 cut(s) 524, 1357, 1529, 1612
BcoDI GTCTC 4 cut(s) 472, 859, 883, 1568
BfaI CTAG 3 cut(s) 216, 968, 1536
BfmI CTRYAG 1 cut(s) 1014
BfoI RGCGCY 3 cut(s) 381, 444, 597
BisI GCNGC 5 cut(s) 348, 405, 504, 912, 1212
BlnI CCTAGG 1 cut(s) 1535
BlsI GCNGC 5 cut(s) 349, 406, 505, 913, 1213
Bme1390I CCNGG 6 cut(s) 284, 524, 1270, 1357, 1529, 1612
Bme18I GGWCC 2 cut(s) 141, 832
BmgT120I GGNCC 3 cut(s) 141, 832, 1358
BmiI GGNNCC 8 cut(s) 143, 379, 442, 460, 716, 833, 873, 1533
BmrFI CCNGG 6 cut(s) 284, 524, 1270, 1357, 1529, 1612
BpiI GAAGAC 1 cut(s) 382
BpmI CTGGAG 3 cut(s) 1209, 1250, 1424
BpuMI CCSGG 4 cut(s) 524, 1357, 1529, 1612
BsaAI YACGTR 1 cut(s) 583
BsaHI GRCGYC 5 cut(s) 335, 378, 387, 441, 543
BsaI GGTCTC 2 cut(s) 859, 1568
BsaWI WCCGGW 1 cut(s) 1423
BsaXI ACNNNNNCTCC 4 cut(s) 98, 128, 706, 736
Bsc4I CCNNNNNNNGG 7 cut(s) 138, 523, 562, 724, 827, 1333, 1344
Bse118I RCCGGY 2 cut(s) 431, 455
Bse1I ACTGG 2 cut(s) 875, 1441
BseAI TCCGGA 1 cut(s) 1423
BseBI CCWGG 2 cut(s) 284, 1270
BseGI GGATG 5 cut(s) 6, 243, 444, 672, 1009
BseLI CCNNNNNNNGG 7 cut(s) 138, 523, 562, 724, 827, 1333, 1344
BseMII CTCAG 3 cut(s) 581, 732, 1116
BseNI ACTGG 2 cut(s) 875, 1441
BseXI GCAGC 2 cut(s) 898, 1198
BsgI GTGCAG 2 cut(s) 1197, 1540
Bsh1236I CGCG 2 cut(s) 494, 506
BshFI GGCC 9 cut(s) 5, 180, 347, 527, 566, 1323, 1337, 1360, 1383
BshNI GGYRCC 4 cut(s) 377, 440, 458, 1531
BsiHKAI GWGCWC 3 cut(s) 844, 1225, 1440
BsiSI CCGG 9 cut(s) 432, 456, 524, 718, 835, 1356, 1424, 1528, 1611
BslFI GGGAC 2 cut(s) 127, 554
BslI CCNNNNNNNGG 7 cut(s) 138, 523, 562, 724, 827, 1333, 1344
BsmAI GTCTC 4 cut(s) 472, 859, 883, 1568
BsmBI CGTCTC 1 cut(s) 472
BsmFI GGGAC 2 cut(s) 127, 554
BsnI GGCC 9 cut(s) 5, 180, 347, 527, 566, 1323, 1337, 1360, 1383
Bso31I GGTCTC 2 cut(s) 859, 1568
Bsp1286I GDGCHC 4 cut(s) 844, 1116, 1225, 1440
Bsp13I TCCGGA 1 cut(s) 1423
Bsp143I GATC 7 cut(s) 286, 495, 558, 783, 803, 1288, 1509
Bsp19I CCATGG 2 cut(s) 342, 1338
Bsp68I TCGCGA 1 cut(s) 494
BspANI GGCC 9 cut(s) 5, 180, 347, 527, 566, 1323, 1337, 1360, 1383
BspCNI CTCAG 3 cut(s) 582, 733, 1117
BspEI TCCGGA 1 cut(s) 1423
BspFNI CGCG 2 cut(s) 494, 506
BspLI GGNNCC 8 cut(s) 143, 379, 442, 460, 716, 833, 873, 1533
BspPI GGATC 2 cut(s) 294, 1296
BspT107I GGYRCC 4 cut(s) 377, 440, 458, 1531
BspTNI GGTCTC 2 cut(s) 859, 1568
BsrFI RCCGGY 2 cut(s) 431, 455
BsrI ACTGG 2 cut(s) 875, 1441
BssAI RCCGGY 2 cut(s) 431, 455
BssMI GATC 7 cut(s) 286, 495, 558, 783, 803, 1288, 1509
BssNI GRCGYC 5 cut(s) 335, 378, 387, 441, 543
BssT1I CCWWGG 5 cut(s) 342, 1314, 1338, 1384, 1535
Bst2UI CCWGG 2 cut(s) 284, 1270
Bst4CI ACNGT 1 cut(s) 1261
Bst6I CTCTTC 7 cut(s) 19, 68, 188, 206, 263, 704, 794
BstACI GRCGYC 5 cut(s) 335, 378, 387, 441, 543
BstBAI YACGTR 1 cut(s) 583
BstC8I GCNNGC 5 cut(s) 457, 615, 840, 1072, 1321
BstDEI CTNAG 3 cut(s) 590, 741, 1125
BstDSI CCRYGG 2 cut(s) 342, 1338
BstF5I GGATG 5 cut(s) 6, 243, 444, 672, 1009
BstFNI CGCG 2 cut(s) 494, 506
BstH2I RGCGCY 3 cut(s) 381, 444, 597
BstHHI GCGC 4 cut(s) 380, 443, 508, 596
BstKTI GATC 7 cut(s) 289, 498, 561, 786, 806, 1291, 1512
BstMAI GTCTC 4 cut(s) 472, 859, 883, 1568
BstMBI GATC 7 cut(s) 286, 495, 558, 783, 803, 1288, 1509
BstMWI GCNNNNNNNGC 7 cut(s) 401, 426, 500, 737, 953, 1220, 1304
BstNI CCWGG 2 cut(s) 284, 1270
BstNSI RCATGY 1 cut(s) 1375
BstSCI CCNGG 6 cut(s) 282, 522, 1268, 1355, 1527, 1610
BstSFI CTRYAG 1 cut(s) 1014
BstUI CGCG 2 cut(s) 494, 506
BstV1I GCAGC 2 cut(s) 898, 1198
BstV2I GAAGAC 1 cut(s) 382
BstX2I RGATCY 1 cut(s) 1288
BstYI RGATCY 1 cut(s) 1288
BsuRI GGCC 9 cut(s) 5, 180, 347, 527, 566, 1323, 1337, 1360, 1383
BtgI CCRYGG 2 cut(s) 342, 1338
BtsCI GGATG 5 cut(s) 6, 243, 444, 672, 1009
BtuMI TCGCGA 1 cut(s) 494
Cac8I GCNNGC 5 cut(s) 457, 615, 840, 1072, 1321
CfoI GCGC 4 cut(s) 380, 443, 508, 596
Cfr10I RCCGGY 2 cut(s) 431, 455
Cfr13I GGNCC 3 cut(s) 141, 832, 1358
CseI GACGC 1 cut(s) 343
CviAII CATG 8 cut(s) 343, 547, 997, 1339, 1372, 1448, 1515, 1579
DdeI CTNAG 3 cut(s) 590, 741, 1125
DinI GGCGCC 2 cut(s) 379, 442
DpnI GATC 7 cut(s) 288, 497, 560, 785, 805, 1290, 1511
DpnII GATC 7 cut(s) 286, 495, 558, 783, 803, 1288, 1509
DraIII CACNNNGTG 1 cut(s) 1518
EaeI YGGCCR 5 cut(s) 3, 345, 525, 564, 1335
Eam1104I CTCTTC 7 cut(s) 19, 68, 188, 206, 263, 704, 794
EarI CTCTTC 7 cut(s) 19, 68, 188, 206, 263, 704, 794
EciI GGCGGA 4 cut(s) 401, 442, 460, 699
Ecl136II GAGCTC 2 cut(s) 842, 1438
Eco130I CCWWGG 5 cut(s) 342, 1314, 1338, 1384, 1535
Eco147I AGGCCT 1 cut(s) 1383
Eco24I GRGCYC 3 cut(s) 844, 1116, 1440
Eco31I GGTCTC 2 cut(s) 859, 1568
Eco32I GATATC 1 cut(s) 1176
Eco47I GGWCC 2 cut(s) 141, 832
Eco53kI GAGCTC 2 cut(s) 842, 1438
Eco57I CTGAAG 1 cut(s) 911
EcoICRI GAGCTC 2 cut(s) 842, 1438
EcoO109I RGGNCCY 1 cut(s) 141
EcoRI GAATTC 2 cut(s) 770, 1001
EcoRII CCWGG 2 cut(s) 282, 1268
EcoRV GATATC 1 cut(s) 1176
EcoT14I CCWWGG 5 cut(s) 342, 1314, 1338, 1384, 1535
EcoT38I GRGCYC 3 cut(s) 844, 1116, 1440
EgeI GGCGCC 2 cut(s) 379, 442
EheI GGCGCC 2 cut(s) 379, 442
ErhI CCWWGG 5 cut(s) 342, 1314, 1338, 1384, 1535
Esp3I CGTCTC 1 cut(s) 472
FaeI CATG 8 cut(s) 346, 550, 1000, 1342, 1375, 1451, 1518, 1582
FalI AAGNNNNNCTT 2 cut(s) 302, 334
FaqI GGGAC 2 cut(s) 127, 554
FatI CATG 8 cut(s) 342, 546, 996, 1338, 1371, 1447, 1514, 1578
FauI CCCGC 1 cut(s) 1336
FbaI TGATCA 1 cut(s) 1509
Fnu4HI GCNGC 5 cut(s) 348, 405, 504, 912, 1212
FokI GGATG 4 cut(s) 230, 431, 679, 996
FriOI GRGCYC 3 cut(s) 844, 1116, 1440
Fsp4HI GCNGC 5 cut(s) 348, 405, 504, 912, 1212
FspBI CTAG 3 cut(s) 216, 968, 1536
GlaI GCGC 4 cut(s) 379, 442, 507, 595
GluI GCNGC 5 cut(s) 348, 405, 504, 912, 1212
GsuI CTGGAG 3 cut(s) 1209, 1250, 1424
HaeII RGCGCY 3 cut(s) 381, 444, 597
HaeIII GGCC 9 cut(s) 5, 180, 347, 527, 566, 1323, 1337, 1360, 1383
HapII CCGG 9 cut(s) 432, 456, 524, 718, 835, 1356, 1424, 1528, 1611
HgaI GACGC 1 cut(s) 343
HhaI GCGC 4 cut(s) 380, 443, 508, 596
Hin1I GRCGYC 5 cut(s) 335, 378, 387, 441, 543
Hin1II CATG 8 cut(s) 346, 550, 1000, 1342, 1375, 1451, 1518, 1582
Hin6I GCGC 4 cut(s) 378, 441, 506, 594
HinP1I GCGC 4 cut(s) 378, 441, 506, 594
HinfI GANTC 2 cut(s) 933, 1524
HpaII CCGG 9 cut(s) 432, 456, 524, 718, 835, 1356, 1424, 1528, 1611
HphI GGTGA 6 cut(s) 295, 307, 346, 511, 1411, 1519
Hpy188I TCNGA 5 cut(s) 591, 788, 808, 891, 922
Hpy188III TCNNGA 6 cut(s) 493, 664, 845, 1229, 1424, 1459
Hpy99I CGWCG 6 cut(s) 389, 482, 485, 494, 632, 922
HpyAV CCTTC 5 cut(s) 37, 328, 472, 484, 520
HpyCH4III ACNGT 1 cut(s) 1261
HpyCH4IV ACGT 5 cut(s) 387, 530, 543, 569, 582
HpyCH4V TGCA 7 cut(s) 754, 987, 1085, 1214, 1331, 1466, 1521
HpyF10VI GCNNNNNNNGC 7 cut(s) 401, 426, 500, 737, 953, 1220, 1304
HpyF3I CTNAG 3 cut(s) 590, 741, 1125
HpySE526I ACGT 5 cut(s) 387, 530, 543, 569, 582
Hsp92I GRCGYC 5 cut(s) 335, 378, 387, 441, 543
Hsp92II CATG 8 cut(s) 346, 550, 1000, 1342, 1375, 1451, 1518, 1582
HspAI GCGC 4 cut(s) 378, 441, 506, 594
KasI GGCGCC 2 cut(s) 377, 440
Kpn2I TCCGGA 1 cut(s) 1423
KroI GCCGGC 1 cut(s) 455
KroNI GCCGGC 1 cut(s) 457
Ksp22I TGATCA 1 cut(s) 1509
Kzo9I GATC 7 cut(s) 286, 495, 558, 783, 803, 1288, 1509
LmnI GCTCC 6 cut(s) 173, 701, 714, 1079, 1220, 1443
Lsp1109I GCAGC 2 cut(s) 898, 1198
MaeI CTAG 3 cut(s) 216, 968, 1536
MaeII ACGT 5 cut(s) 387, 530, 543, 569, 582
MaeIII GTNAC 2 cut(s) 301, 352
MalI GATC 7 cut(s) 288, 497, 560, 785, 805, 1290, 1511
MboI GATC 7 cut(s) 286, 495, 558, 783, 803, 1288, 1509
MflI RGATCY 1 cut(s) 1288
MhlI GDGCHC 4 cut(s) 844, 1116, 1225, 1440
MlsI TGGCCA 2 cut(s) 5, 1337
MluCI AATT 7 cut(s) 770, 882, 900, 1001, 1131, 1193, 1276
MluNI TGGCCA 2 cut(s) 5, 1337
Mly113I GGCGCC 2 cut(s) 378, 441
MmeI TCCRAC 2 cut(s) 900, 1056
Mox20I TGGCCA 2 cut(s) 5, 1337
MroI TCCGGA 1 cut(s) 1423
MroNI GCCGGC 1 cut(s) 455
MscI TGGCCA 2 cut(s) 5, 1337
MseI TTAA 1 cut(s) 1368
Msp20I TGGCCA 2 cut(s) 5, 1337
MspI CCGG 9 cut(s) 432, 456, 524, 718, 835, 1356, 1424, 1528, 1611
MspR9I CCNGG 6 cut(s) 284, 524, 1270, 1357, 1529, 1612
MvaI CCWGG 2 cut(s) 284, 1270
MvnI CGCG 2 cut(s) 494, 506
MwoI GCNNNNNNNGC 7 cut(s) 401, 426, 500, 737, 953, 1220, 1304
NaeI GCCGGC 1 cut(s) 457
NarI GGCGCC 2 cut(s) 378, 441
NciI CCSGG 4 cut(s) 524, 1357, 1529, 1612
NcoI CCATGG 2 cut(s) 342, 1338
NdeII GATC 7 cut(s) 286, 495, 558, 783, 803, 1288, 1509
NgoMIV GCCGGC 1 cut(s) 455
NlaIII CATG 8 cut(s) 346, 550, 1000, 1342, 1375, 1451, 1518, 1582
NlaIV GGNNCC 8 cut(s) 143, 379, 442, 460, 716, 833, 873, 1533
NmeAIII GCCGAG 5 cut(s) 348, 440, 542, 622, 846
NmuCI GTSAC 2 cut(s) 301, 352
NruI TCGCGA 1 cut(s) 494
NspI RCATGY 1 cut(s) 1375
PceI AGGCCT 1 cut(s) 1383
PcsI WCGNNNNNNNCGW 3 cut(s) 381, 486, 540
PdiI GCCGGC 1 cut(s) 457
PfeI GAWTC 2 cut(s) 933, 1524
PkrI GCNGC 5 cut(s) 349, 406, 505, 913, 1213
PluTI GGCGCC 2 cut(s) 381, 444
Ppu21I YACGTR 1 cut(s) 583
PpuMI RGGWCCY 1 cut(s) 141
Psp124BI GAGCTC 2 cut(s) 844, 1440
Psp5II RGGWCCY 1 cut(s) 141
Psp6I CCWGG 2 cut(s) 282, 1268
PspGI CCWGG 2 cut(s) 282, 1268
PspN4I GGNNCC 8 cut(s) 143, 379, 442, 460, 716, 833, 873, 1533
PspPI GGNCC 3 cut(s) 141, 832, 1358
PspPPI RGGWCCY 1 cut(s) 141
PsrI GAACNNNNNNTAC 2 cut(s) 855, 887
PsuI RGATCY 1 cut(s) 1288
RruI TCGCGA 1 cut(s) 494
SacI GAGCTC 2 cut(s) 844, 1440
SaqAI TTAA 1 cut(s) 1368
SatI GCNGC 5 cut(s) 348, 405, 504, 912, 1212
Sau3AI GATC 7 cut(s) 286, 495, 558, 783, 803, 1288, 1509
Sau96I GGNCC 3 cut(s) 141, 832, 1358
ScrFI CCNGG 6 cut(s) 284, 524, 1270, 1357, 1529, 1612
SduI GDGCHC 4 cut(s) 844, 1116, 1225, 1440
SfcI CTRYAG 1 cut(s) 1014
SfoI GGCGCC 2 cut(s) 379, 442
SinI GGWCC 2 cut(s) 141, 832
Sse9I AATT 7 cut(s) 770, 882, 900, 1001, 1131, 1193, 1276
SseBI AGGCCT 1 cut(s) 1383
SspDI GGCGCC 2 cut(s) 377, 440
SspI AATATT 1 cut(s) 952
SspMI CTAG 3 cut(s) 216, 968, 1536
SstI GAGCTC 2 cut(s) 844, 1440
StuI AGGCCT 1 cut(s) 1383
StyD4I CCNGG 6 cut(s) 282, 522, 1268, 1355, 1527, 1610
StyI CCWWGG 5 cut(s) 342, 1314, 1338, 1384, 1535
TaaI ACNGT 1 cut(s) 1261
TaiI ACGT 5 cut(s) 390, 533, 546, 572, 585
TaqI TCGA 1 cut(s) 774
TasI AATT 7 cut(s) 770, 882, 900, 1001, 1131, 1193, 1276
TauI GCSGC 3 cut(s) 350, 407, 506
TfiI GAWTC 2 cut(s) 933, 1524
Tru1I TTAA 1 cut(s) 1368
Tru9I TTAA 1 cut(s) 1368
TseFI GTSAC 2 cut(s) 301, 352
TseI GCWGC 2 cut(s) 911, 1211
Tsp45I GTSAC 2 cut(s) 301, 352
TspDTI ATGAA 3 cut(s) 985, 1082, 1567
VpaK11BI GGWCC 2 cut(s) 141, 832
XapI RAATTY 4 cut(s) 770, 1001, 1131, 1276
XceI RCATGY 1 cut(s) 1375
XmaJI CCTAGG 1 cut(s) 1535
XspI CTAG 3 cut(s) 216, 968, 1536
ZraI GACGTC 2 cut(s) 388, 544
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.