Rh3BG059700

Belongs to the Ca(2 ) cation antiporter (CaCA) (TC 2.A.19) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0012048
Physical Location & Seq
Forward (+)
4067992 .. 4071577
3586 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG059700.1

Sequence Viewer

Length: 1611 bp
ATGGCCATCCTCTCTTCCTTTCAAACCTTCACTCTCTCCCTAACACTCCTCTCCATCTTCCTCTTCTTCCTCCTCCTCCTCACTCCCCCAACTTCCACTTCCCCAAACTACCCCTCCCCTTTCCCCCTAACCCCCCACAGGTCCCTCCTCCAAACCCCCTCCTCCTGCTCCTCCAATGGCCTCTTCAACTACCTCTGCCTCTTCCCCCAAAACCCTAGCCTCTCTCTCTCCTCCCTCTCTCTCATCCTCCTCCTCCTCTTCTACCTCCTCATCAAAACCGCCCAGGATCACTTCTCCCTCGTCACCACCAAGCTCACCTTCGCCCTCAACCTGACGCCCTCCATGGCCGCCGTCACCCTCCTCGCCCTCGGCAACGGCGCCCCCGACGTCTTCGCCTCCCTCGCCGCCGTCCGCCGCGGCAACTACCGCACCGGCTTCGGCGCCATCCTCTCCGCCGGCACCTTCGTCTCCGCCTTCGTCGTCGGCTTCGTCGCGATCTACGCCGCGCCCTTCTCCCTCACCCCGGCCACGTTCGTCAGGGACGTCATGTTCTACCTGATCTCGGCCACGTTTCTGTTCTACGTTTATCTGAGCGCCGAGATTTATCTGTGGCAGGCGGTCGGGTTCGTCGGGTTTTACTTGTTCTTTGTGGGGTTTGTGTTCTGGATGGACTTGGGGTTGGGCGGAGGAGGAGGAGGAGGGAAGAGGAGCCGGAGTGAGGTGGCGGTGGGTGCTGAGAGTGAAATGCACAAGGGCTTTGTGGAATTGGATTGCGAGATCGGAGAAGTTGAGAAGAGATCAGAGGAGGGGAAGCCCAGTTTCGGGGTCCGGCGAGGTCTGGAAATGGTCTCAAAAGTATGGGAGGTTCCGGTCTCAATTCTTCTGAAGCTGACAATTCCACAAGCTGCCCCGTCGGAATGGAGTAGATTCTATACATCAGCCAATATTGCTCTATGCCCTCTAGCACTTCTATATTCTTGCAACTCGTTCATGGAATTCAATCATCCTGTAGCTTTTCTTCTTTCCAACACCCATCTTCCACTATGGTTTGTTGTATTCTTGGCAAGCTCCTCTCTTGCACTTCTTCATTATATAATAGAGAAAGAGCCCCCCAAAACTGAGCAAATTCCTGTATTGCTTATAGCATTTGTTATGAGTGTCTTTTGGATATCCACTACTGCTGGAGAATTGTTGAACTGCCTTGCTGCACTTGGAGCACTTCTGGAGTTGCCACCAGCACTTCTTGGGCTTACGGTTCTTGCCTGGGGAAATTCTGTGGGGGATCTTGTTGCTGATGTGGCACTTGCCAAGGCAGGCCACCCTGCATTGGCCATGGCGGGGTGCTTTGCCGGGCCAATGTTTAACATGCTTGTAGGCCTTGGAACAGCGTTGGTGATACAGACCTCCAATGTTTATCCGGAAGCGTATGAGCTCCAGTTCCATGTGGGTATCGTGATTGCATTTGTGTTCTTGCTTTTGAGCCTGATGGGTTCTCTATTGGTGATCACATGGTGCAGATTCCGGGTGCCTAGGTTCTGGGGTTTCTGTCTCGTTGGTCTCTATGTTATCTTCATGGCAGTTAGCTTACTGATTGCCAAGTTTTCCGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003700 GO:0003712 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006355 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006814 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008324 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009889 GO:0009987 GO:0010029 GO:0010033 GO:0010099 GO:0010228 GO:0010468 GO:0010476 GO:0010556 GO:0015075 GO:0015077 GO:0015079 GO:0015081 GO:0015318 GO:0015672 GO:0016020 GO:0019219 GO:0019222 GO:0022414 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0034220 GO:0034399 GO:0035725 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046873 GO:0048518 GO:0048571 GO:0048573 GO:0048574 GO:0048580 GO:0048582 GO:0048583 GO:0048584 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051179 GO:0051234 GO:0051239 GO:0051240 GO:0051252 GO:0051716 GO:0055085 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071804 GO:0071805 GO:0071944 GO:0080090 GO:0097305 GO:0097306 GO:0098655 GO:0098660 GO:0098662 GO:0140110 GO:1900140 GO:1901700 GO:1901701 GO:1903506 GO:2000026 GO:2000030 GO:2000112 GO:2000306 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Na_Ca_ex

Protein Analysis

536

Amino Acids

58.26

Weight (kDa)

6.45

Isoelectric Point (pI)

45.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Na_Ca_ex PF01699 80 - 222 5.6e-20 Sodium/calcium exchanger protein
Na_Ca_ex PF01699 379 - 529 2.4e-29 Sodium/calcium exchanger protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012048)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08960
fragaria_vesca FvH4_6g05530 FvH4_6g05530 FvH4_6g05530
malus_domestica MD04G1207600.v1.1 MD12G1221900.v1.1
prunus_persica Prupe.6G328600_v2.0.a1
pyrus_communis pycom04g18380 pycom12g20800
rosa_chinensis RchiOBHm_Chr3g0454301
rosa_laevigata RLG00000025464
rosa_multiflora Rmu_sc0001340.1_g000003
rosa_roxburghii Rroxscaffold_165G00437120
rosa_rugosa Rorug02G0654100
rosa_samantha Rh3AG058000 Rh3BG059700 Rh3CG058900 Rh3DG060200
rosa_wichuraiana Rw3G004440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 390, 546
AccB1I GGYRCC 4 cut(s) 377, 440, 458, 1525
AccII CGCG 3 cut(s) 417, 494, 506
AccIII TCCGGA 1 cut(s) 1417
AclWI GGATC 2 cut(s) 294, 1290
AcoI YGGCCR 5 cut(s) 3, 345, 525, 564, 1329
AcsI RAATTY 3 cut(s) 995, 1125, 1270
AcuI CTGAAG 1 cut(s) 905
AcyI GRCGYC 5 cut(s) 335, 378, 387, 441, 543
AdeI CACNNNGTG 1 cut(s) 1512
AfiI CCNNNNNNNGG 8 cut(s) 138, 523, 562, 718, 821, 822, 1327, 1338
AgsI TTSAA 4 cut(s) 23, 187, 1000, 1195
AjnI CCWGG 2 cut(s) 282, 1262
AjuI GAANNNNNNNTTGG 6 cut(s) 82, 114, 167, 199, 302, 334
AloI GAACNNNNNNTCC 2 cut(s) 533, 565
AluBI AGCT 7 cut(s) 313, 889, 905, 1013, 1068, 1432, 1584
AluI AGCT 7 cut(s) 313, 889, 905, 1013, 1068, 1432, 1584
Alw21I GWGCWC 2 cut(s) 1219, 1434
Alw26I GTCTC 5 cut(s) 472, 853, 877, 1553, 1562
AlwI GGATC 2 cut(s) 294, 1290
Aor13HI TCCGGA 1 cut(s) 1417
AoxI GGCC 9 cut(s) 3, 178, 345, 525, 564, 1315, 1329, 1352, 1375
ApeKI GCWGC 2 cut(s) 905, 1205
ApoI RAATTY 3 cut(s) 995, 1125, 1270
AspA2I CCTAGG 1 cut(s) 1529
AspLEI GCGC 4 cut(s) 380, 443, 508, 596
AspS9I GGNCC 3 cut(s) 141, 826, 1352
AsuC2I CCSGG 4 cut(s) 524, 1351, 1523, 1606
AsuHPI GGTGA 6 cut(s) 295, 307, 346, 511, 1405, 1513
AvaII GGWCC 2 cut(s) 141, 826
AvrII CCTAGG 1 cut(s) 1529
BalI TGGCCA 2 cut(s) 5, 1331
BanI GGYRCC 4 cut(s) 377, 440, 458, 1525
BanII GRGCYC 2 cut(s) 1110, 1434
BarI GAAGNNNNNNTAC 2 cut(s) 1002, 1034
BbsI GAAGAC 1 cut(s) 382
Bbv12I GWGCWC 2 cut(s) 1219, 1434
BbvI GCAGC 2 cut(s) 892, 1192
BccI CCATC 6 cut(s) 14, 62, 452, 661, 1041, 1480
BceAI ACGGC 3 cut(s) 335, 391, 392
BcgI CGANNNNNNTGC 2 cut(s) 418, 452
BciT130I CCWGG 2 cut(s) 284, 1264
BclI TGATCA 1 cut(s) 1503
BcnI CCSGG 4 cut(s) 524, 1351, 1523, 1606
BcoDI GTCTC 5 cut(s) 472, 853, 877, 1553, 1562
BfaI CTAG 3 cut(s) 216, 962, 1530
BfmI CTRYAG 1 cut(s) 1008
BfoI RGCGCY 3 cut(s) 381, 444, 597
BisI GCNGC 7 cut(s) 348, 405, 415, 418, 504, 906, 1206
BlnI CCTAGG 1 cut(s) 1529
BlsI GCNGC 7 cut(s) 349, 406, 416, 419, 505, 907, 1207
Bme1390I CCNGG 6 cut(s) 284, 524, 1264, 1351, 1523, 1606
Bme18I GGWCC 2 cut(s) 141, 826
BmgT120I GGNCC 3 cut(s) 141, 826, 1352
BmiI GGNNCC 8 cut(s) 143, 379, 442, 460, 710, 827, 867, 1527
BmrFI CCNGG 6 cut(s) 284, 524, 1264, 1351, 1523, 1606
BmrI ACTGGG 1 cut(s) 810
BmuI ACTGGG 1 cut(s) 810
BpiI GAAGAC 1 cut(s) 382
BpmI CTGGAG 3 cut(s) 1203, 1244, 1418
BpuMI CCSGG 4 cut(s) 524, 1351, 1523, 1606
BsaHI GRCGYC 5 cut(s) 335, 378, 387, 441, 543
BsaI GGTCTC 3 cut(s) 853, 877, 1562
BsaWI WCCGGW 2 cut(s) 868, 1417
BsaXI ACNNNNNCTCC 4 cut(s) 98, 128, 700, 730
Bsc4I CCNNNNNNNGG 8 cut(s) 138, 523, 562, 718, 821, 822, 1327, 1338
Bse118I RCCGGY 2 cut(s) 431, 455
Bse1I ACTGG 2 cut(s) 816, 1435
BseAI TCCGGA 1 cut(s) 1417
BseBI CCWGG 2 cut(s) 284, 1264
BseGI GGATG 5 cut(s) 6, 243, 444, 672, 1003
BseLI CCNNNNNNNGG 8 cut(s) 138, 523, 562, 718, 821, 822, 1327, 1338
BseMII CTCAG 3 cut(s) 581, 726, 1110
BseNI ACTGG 2 cut(s) 816, 1435
BseXI GCAGC 2 cut(s) 892, 1192
BsgI GTGCAG 2 cut(s) 1191, 1534
Bsh1236I CGCG 3 cut(s) 417, 494, 506
Bsh1285I CGRYCG 1 cut(s) 621
BshFI GGCC 9 cut(s) 5, 180, 347, 527, 566, 1317, 1331, 1354, 1377
BshNI GGYRCC 4 cut(s) 377, 440, 458, 1525
BsiEI CGRYCG 1 cut(s) 621
BsiHKAI GWGCWC 2 cut(s) 1219, 1434
BslFI GGGAC 2 cut(s) 127, 554
BslI CCNNNNNNNGG 8 cut(s) 138, 523, 562, 718, 821, 822, 1327, 1338
BsmAI GTCTC 5 cut(s) 472, 853, 877, 1553, 1562
BsmBI CGTCTC 1 cut(s) 472
BsmFI GGGAC 2 cut(s) 127, 554
BsnI GGCC 9 cut(s) 5, 180, 347, 527, 566, 1317, 1331, 1354, 1377
Bso31I GGTCTC 3 cut(s) 853, 877, 1562
Bsp1286I GDGCHC 3 cut(s) 1110, 1219, 1434
Bsp13I TCCGGA 1 cut(s) 1417
Bsp143I GATC 7 cut(s) 286, 495, 558, 777, 797, 1282, 1503
Bsp19I CCATGG 2 cut(s) 342, 1332
Bsp68I TCGCGA 1 cut(s) 494
BspANI GGCC 9 cut(s) 5, 180, 347, 527, 566, 1317, 1331, 1354, 1377
BspCNI CTCAG 3 cut(s) 582, 727, 1111
BspEI TCCGGA 1 cut(s) 1417
BspFNI CGCG 3 cut(s) 417, 494, 506
BspLI GGNNCC 8 cut(s) 143, 379, 442, 460, 710, 827, 867, 1527
BspPI GGATC 2 cut(s) 294, 1290
BspT107I GGYRCC 4 cut(s) 377, 440, 458, 1525
BspTNI GGTCTC 3 cut(s) 853, 877, 1562
BsrFI RCCGGY 2 cut(s) 431, 455
BsrI ACTGG 2 cut(s) 816, 1435
BssAI RCCGGY 2 cut(s) 431, 455
BssMI GATC 7 cut(s) 286, 495, 558, 777, 797, 1282, 1503
BssNI GRCGYC 5 cut(s) 335, 378, 387, 441, 543
BssT1I CCWWGG 5 cut(s) 342, 1308, 1332, 1378, 1529
Bst2UI CCWGG 2 cut(s) 284, 1264
Bst4CI ACNGT 1 cut(s) 1255
Bst6I CTCTTC 7 cut(s) 19, 68, 188, 206, 263, 698, 788
BstACI GRCGYC 5 cut(s) 335, 378, 387, 441, 543
BstC8I GCNNGC 4 cut(s) 457, 615, 1066, 1315
BstDEI CTNAG 3 cut(s) 590, 735, 1119
BstDSI CCRYGG 3 cut(s) 342, 415, 1332
BstF5I GGATG 5 cut(s) 6, 243, 444, 672, 1003
BstFNI CGCG 3 cut(s) 417, 494, 506
BstH2I RGCGCY 3 cut(s) 381, 444, 597
BstHHI GCGC 4 cut(s) 380, 443, 508, 596
BstKTI GATC 7 cut(s) 289, 498, 561, 780, 800, 1285, 1506
BstMAI GTCTC 5 cut(s) 472, 853, 877, 1553, 1562
BstMBI GATC 7 cut(s) 286, 495, 558, 777, 797, 1282, 1503
BstMCI CGRYCG 1 cut(s) 621
BstMWI GCNNNNNNNGC 7 cut(s) 401, 426, 500, 731, 947, 1214, 1298
BstNI CCWGG 2 cut(s) 284, 1264
BstNSI RCATGY 1 cut(s) 1369
BstSCI CCNGG 6 cut(s) 282, 522, 1262, 1349, 1521, 1604
BstSFI CTRYAG 1 cut(s) 1008
BstUI CGCG 3 cut(s) 417, 494, 506
BstV1I GCAGC 2 cut(s) 892, 1192
BstV2I GAAGAC 1 cut(s) 382
BstX2I RGATCY 1 cut(s) 1282
BstYI RGATCY 1 cut(s) 1282
BsuRI GGCC 9 cut(s) 5, 180, 347, 527, 566, 1317, 1331, 1354, 1377
BtgI CCRYGG 3 cut(s) 342, 415, 1332
BtsCI GGATG 5 cut(s) 6, 243, 444, 672, 1003
BtuMI TCGCGA 1 cut(s) 494
Cac8I GCNNGC 4 cut(s) 457, 615, 1066, 1315
CfoI GCGC 4 cut(s) 380, 443, 508, 596
Cfr10I RCCGGY 2 cut(s) 431, 455
Cfr13I GGNCC 3 cut(s) 141, 826, 1352
Cfr42I CCGCGG 1 cut(s) 418
CseI GACGC 1 cut(s) 343
CviAII CATG 8 cut(s) 343, 547, 991, 1333, 1366, 1442, 1509, 1573
DdeI CTNAG 3 cut(s) 590, 735, 1119
DinI GGCGCC 2 cut(s) 379, 442
DpnI GATC 7 cut(s) 288, 497, 560, 779, 799, 1284, 1505
DpnII GATC 7 cut(s) 286, 495, 558, 777, 797, 1282, 1503
DraIII CACNNNGTG 1 cut(s) 1512
EaeI YGGCCR 5 cut(s) 3, 345, 525, 564, 1329
Eam1104I CTCTTC 7 cut(s) 19, 68, 188, 206, 263, 698, 788
EarI CTCTTC 7 cut(s) 19, 68, 188, 206, 263, 698, 788
EciI GGCGGA 4 cut(s) 401, 442, 460, 699
Ecl136II GAGCTC 1 cut(s) 1432
Eco130I CCWWGG 5 cut(s) 342, 1308, 1332, 1378, 1529
Eco147I AGGCCT 1 cut(s) 1377
Eco24I GRGCYC 2 cut(s) 1110, 1434
Eco31I GGTCTC 3 cut(s) 853, 877, 1562
Eco32I GATATC 1 cut(s) 1170
Eco47I GGWCC 2 cut(s) 141, 826
Eco53kI GAGCTC 1 cut(s) 1432
Eco57I CTGAAG 1 cut(s) 905
EcoICRI GAGCTC 1 cut(s) 1432
EcoO109I RGGNCCY 1 cut(s) 141
EcoRI GAATTC 1 cut(s) 995
EcoRII CCWGG 2 cut(s) 282, 1262
EcoRV GATATC 1 cut(s) 1170
EcoT14I CCWWGG 5 cut(s) 342, 1308, 1332, 1378, 1529
EcoT38I GRGCYC 2 cut(s) 1110, 1434
EgeI GGCGCC 2 cut(s) 379, 442
EheI GGCGCC 2 cut(s) 379, 442
ErhI CCWWGG 5 cut(s) 342, 1308, 1332, 1378, 1529
Esp3I CGTCTC 1 cut(s) 472
FaeI CATG 8 cut(s) 346, 550, 994, 1336, 1369, 1445, 1512, 1576
FalI AAGNNNNNCTT 2 cut(s) 302, 334
FaqI GGGAC 2 cut(s) 127, 554
FatI CATG 8 cut(s) 342, 546, 990, 1332, 1365, 1441, 1508, 1572
FauI CCCGC 1 cut(s) 1330
FbaI TGATCA 1 cut(s) 1503
Fnu4HI GCNGC 7 cut(s) 348, 405, 415, 418, 504, 906, 1206
FokI GGATG 4 cut(s) 230, 431, 679, 990
FriOI GRGCYC 2 cut(s) 1110, 1434
Fsp4HI GCNGC 7 cut(s) 348, 405, 415, 418, 504, 906, 1206
FspBI CTAG 3 cut(s) 216, 962, 1530
GlaI GCGC 4 cut(s) 379, 442, 507, 595
GluI GCNGC 7 cut(s) 348, 405, 415, 418, 504, 906, 1206
GsuI CTGGAG 3 cut(s) 1203, 1244, 1418
HaeII RGCGCY 3 cut(s) 381, 444, 597
HaeIII GGCC 9 cut(s) 5, 180, 347, 527, 566, 1317, 1331, 1354, 1377
HgaI GACGC 1 cut(s) 343
HhaI GCGC 4 cut(s) 380, 443, 508, 596
Hin1I GRCGYC 5 cut(s) 335, 378, 387, 441, 543
Hin1II CATG 8 cut(s) 346, 550, 994, 1336, 1369, 1445, 1512, 1576
Hin6I GCGC 4 cut(s) 378, 441, 506, 594
HinP1I GCGC 4 cut(s) 378, 441, 506, 594
HinfI GANTC 2 cut(s) 927, 1518
HphI GGTGA 6 cut(s) 295, 307, 346, 511, 1405, 1513
Hpy188I TCNGA 5 cut(s) 591, 782, 802, 885, 916
Hpy188III TCNNGA 6 cut(s) 493, 664, 839, 1223, 1418, 1453
Hpy99I CGWCG 6 cut(s) 389, 482, 485, 494, 632, 916
HpyAV CCTTC 5 cut(s) 37, 328, 472, 484, 520
HpyCH4III ACNGT 1 cut(s) 1255
HpyCH4IV ACGT 5 cut(s) 387, 530, 543, 569, 582
HpyCH4V TGCA 7 cut(s) 748, 981, 1079, 1208, 1325, 1460, 1515
HpyF10VI GCNNNNNNNGC 7 cut(s) 401, 426, 500, 731, 947, 1214, 1298
HpyF3I CTNAG 3 cut(s) 590, 735, 1119
HpySE526I ACGT 5 cut(s) 387, 530, 543, 569, 582
Hsp92I GRCGYC 5 cut(s) 335, 378, 387, 441, 543
Hsp92II CATG 8 cut(s) 346, 550, 994, 1336, 1369, 1445, 1512, 1576
HspAI GCGC 4 cut(s) 378, 441, 506, 594
KasI GGCGCC 2 cut(s) 377, 440
Kpn2I TCCGGA 1 cut(s) 1417
KroI GCCGGC 1 cut(s) 455
KroNI GCCGGC 1 cut(s) 457
Ksp22I TGATCA 1 cut(s) 1503
KspI CCGCGG 1 cut(s) 418
Kzo9I GATC 7 cut(s) 286, 495, 558, 777, 797, 1282, 1503
LmnI GCTCC 5 cut(s) 173, 708, 1073, 1214, 1437
Lsp1109I GCAGC 2 cut(s) 892, 1192
MaeI CTAG 3 cut(s) 216, 962, 1530
MaeII ACGT 5 cut(s) 387, 530, 543, 569, 582
MaeIII GTNAC 2 cut(s) 301, 352
MalI GATC 7 cut(s) 288, 497, 560, 779, 799, 1284, 1505
MboI GATC 7 cut(s) 286, 495, 558, 777, 797, 1282, 1503
MflI RGATCY 1 cut(s) 1282
MhlI GDGCHC 3 cut(s) 1110, 1219, 1434
MlsI TGGCCA 2 cut(s) 5, 1331
MluCI AATT 7 cut(s) 764, 876, 894, 995, 1125, 1187, 1270
MluNI TGGCCA 2 cut(s) 5, 1331
Mly113I GGCGCC 2 cut(s) 378, 441
MmeI TCCRAC 2 cut(s) 894, 1050
Mox20I TGGCCA 2 cut(s) 5, 1331
MroI TCCGGA 1 cut(s) 1417
MroNI GCCGGC 1 cut(s) 455
MscI TGGCCA 2 cut(s) 5, 1331
MseI TTAA 1 cut(s) 1362
Msp20I TGGCCA 2 cut(s) 5, 1331
MspA1I CMGCKG 1 cut(s) 417
MspR9I CCNGG 6 cut(s) 284, 524, 1264, 1351, 1523, 1606
MvaI CCWGG 2 cut(s) 284, 1264
MvnI CGCG 3 cut(s) 417, 494, 506
MwoI GCNNNNNNNGC 7 cut(s) 401, 426, 500, 731, 947, 1214, 1298
NaeI GCCGGC 1 cut(s) 457
NarI GGCGCC 2 cut(s) 378, 441
NciI CCSGG 4 cut(s) 524, 1351, 1523, 1606
NcoI CCATGG 2 cut(s) 342, 1332
NdeII GATC 7 cut(s) 286, 495, 558, 777, 797, 1282, 1503
NgoMIV GCCGGC 1 cut(s) 455
NlaIII CATG 8 cut(s) 346, 550, 994, 1336, 1369, 1445, 1512, 1576
NlaIV GGNNCC 8 cut(s) 143, 379, 442, 460, 710, 827, 867, 1527
NmeAIII GCCGAG 3 cut(s) 348, 542, 622
NmuCI GTSAC 2 cut(s) 301, 352
NruI TCGCGA 1 cut(s) 494
NspI RCATGY 1 cut(s) 1369
PceI AGGCCT 1 cut(s) 1377
PcsI WCGNNNNNNNCGW 3 cut(s) 381, 486, 540
PdiI GCCGGC 1 cut(s) 457
PfeI GAWTC 2 cut(s) 927, 1518
PkrI GCNGC 7 cut(s) 349, 406, 416, 419, 505, 907, 1207
PluTI GGCGCC 2 cut(s) 381, 444
PpuMI RGGWCCY 1 cut(s) 141
Psp124BI GAGCTC 1 cut(s) 1434
Psp5II RGGWCCY 1 cut(s) 141
Psp6I CCWGG 2 cut(s) 282, 1262
PspGI CCWGG 2 cut(s) 282, 1262
PspN4I GGNNCC 8 cut(s) 143, 379, 442, 460, 710, 827, 867, 1527
PspPI GGNCC 3 cut(s) 141, 826, 1352
PspPPI RGGWCCY 1 cut(s) 141
PsrI GAACNNNNNNTAC 2 cut(s) 849, 881
PsuI RGATCY 1 cut(s) 1282
RruI TCGCGA 1 cut(s) 494
SacI GAGCTC 1 cut(s) 1434
SacII CCGCGG 1 cut(s) 418
SaqAI TTAA 1 cut(s) 1362
SatI GCNGC 7 cut(s) 348, 405, 415, 418, 504, 906, 1206
Sau3AI GATC 7 cut(s) 286, 495, 558, 777, 797, 1282, 1503
Sau96I GGNCC 3 cut(s) 141, 826, 1352
ScrFI CCNGG 6 cut(s) 284, 524, 1264, 1351, 1523, 1606
SduI GDGCHC 3 cut(s) 1110, 1219, 1434
SfcI CTRYAG 1 cut(s) 1008
SfoI GGCGCC 2 cut(s) 379, 442
Sfr303I CCGCGG 1 cut(s) 418
SgrBI CCGCGG 1 cut(s) 418
SinI GGWCC 2 cut(s) 141, 826
Sse9I AATT 7 cut(s) 764, 876, 894, 995, 1125, 1187, 1270
SseBI AGGCCT 1 cut(s) 1377
SspDI GGCGCC 2 cut(s) 377, 440
SspI AATATT 1 cut(s) 946
SspMI CTAG 3 cut(s) 216, 962, 1530
SstI GAGCTC 1 cut(s) 1434
StuI AGGCCT 1 cut(s) 1377
StyD4I CCNGG 6 cut(s) 282, 522, 1262, 1349, 1521, 1604
StyI CCWWGG 5 cut(s) 342, 1308, 1332, 1378, 1529
TaaI ACNGT 1 cut(s) 1255
TaiI ACGT 5 cut(s) 390, 533, 546, 572, 585
TasI AATT 7 cut(s) 764, 876, 894, 995, 1125, 1187, 1270
TauI GCSGC 5 cut(s) 350, 407, 417, 420, 506
TfiI GAWTC 2 cut(s) 927, 1518
Tru1I TTAA 1 cut(s) 1362
Tru9I TTAA 1 cut(s) 1362
TseFI GTSAC 2 cut(s) 301, 352
TseI GCWGC 2 cut(s) 905, 1205
Tsp45I GTSAC 2 cut(s) 301, 352
TspDTI ATGAA 3 cut(s) 979, 1076, 1561
VpaK11BI GGWCC 2 cut(s) 141, 826
XapI RAATTY 3 cut(s) 995, 1125, 1270
XceI RCATGY 1 cut(s) 1369
XmaJI CCTAGG 1 cut(s) 1529
XspI CTAG 3 cut(s) 216, 962, 1530
ZraI GACGTC 2 cut(s) 388, 544
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.