RLG00000025464

Belongs to the Ca(2 ) cation antiporter (CaCA) (TC 2.A.19) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0012048
Physical Location & Seq
Reverse (-)
45862480 .. 45867681
5202 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025464

Sequence Viewer

Length: 1749 bp
ATGGCCATCCTCTCTTCCTTTCAAACCTTCACTCTCTCCCTAATACTCCTCTCCATCTTCCTCTTCTTCCTCCTCCTCACTCCCCCAACTTCCACTTCCCCAAACTACCCCTCCCCTTTCCCCCTGACCCCCCACAGGTCCCTCCTCCAAACTTCCTCCTCCTCCTGCTCCCCCTCCTCCTCCAATGGCCTCTTCAACTACCTCTGCCTCTTCCCCCAAAACCCTAGCCTCTCTCTCTCCTCCCTCTCTCTCATCCTCCTCCTTCTCTTCTACCTCCTCATCAAAACCGCCCAGGATCACTTCTCCCTCGTCACCACCAAGCTCACCTTCGCCCTCAACCTGACGCCCTCCATGGCCGCCGTCACCCTCCTCGCCCTCGGCAACGGCGCCCCAGACGTCTTCGCCTCCCTCGCCGCCGTCCGCCGCGGCAACTACCGCACCGGCTTCGGCGCCATCCTCTCCGCCGGCACCTTCGTCTCCGCCTTCGTCGTCGGCTTCGTCGCGATCTACGCCGCGCCCTTCTCCCTCACCCCGGCCACGTTCGTCAGGGACGTCATGTTCTACCTGATCTCGGCCACGTTTCTCTTCTACGTGTATCTGAGCGCCGAGATTTATCTGTGGCAGGCGGTGGGGTTCGTCGGGTTCTACTTGTTCTTTGTGGGCTTTGTGTTCTGGATGGACTTGGGGTTGGGCGGAGGAGGAGGGAAGGGGAGCCGGAGTGAGGTGGGGGTGGTTGCTGAGAGTGAAATGCACAAGGGCTTTGTGGAATTGGATTGCGAGATCGGAGAAGTTGACAAGAGATCAGAGGAGGGGAAGCCGAGTTTCGGGGTCCGGCCATGTCTGGAAATGGTCTCAAAAGTATGGGAGGTTCCAGTCTCAATTCTTCTGAAGCTGACAATTCCACAGGCTGCCCCGTCGGAATGGAGTAGATTCTACACATCAGCCAATATTGCTCTATGCCCTCTAGCACTTCTATATTCTTGCAACTCGTTCATGGAATTCAATCATCCTGTAGCTTTTCTTCTTTCCAACACCCATCTTCCACTATGGTTTGTTGTATTCTTGGCAAGCTCCTCTCTTGCAATTCTTCATTATATAATAGAGAAAGAGCCCCCCAAAACTGAGCAAATTCCTGTATTGCTGATAGCATTTGTTATGAGTGTCTTTTGGATATCCACTACTGCTGGAGAATTGTTGAACTGCCTTGCTGCACTTGGAGCACTTCTGGAGTTGCCACCAGCACTTCTTGGGCTTACAGTTCTTGCCTGGGGAAATTCTGTGGGGGATCTTGTTGCTGATGTGGCACTTGCCAAGGCAGGCCACCCGGCATTGGCCATGGCAGGTTGCTTTGCCGGGCCAATGTTTAACATGCTTGTAGGCCTTGGAACAGCGTTGGTGATACAGACCTCCAATGTTTATCCGGAAGCGTATGAGCTCCAGTTCCATGTGGGTATCGTGATTGCATTTGTGTTCTTGCTTTTGAGCCTGATGGGTTCTCTATTGGTGATCACATGGTGCAGATTCCGGGTGCCTAGGTTCTGGGGGTTCTGTCTTGTTGGTCTCTATGTTATCTTCATGGCAGTTAGCTTACTGATTGCCAAGTTTTCCGGAATCGAACAGTCTCCTTCAGTTTTGTTGCTTCTTTTAGGTTCGAAATCGATTTTGCGTAGCAGAGCATCCCCTGTTTGTGAAAAAGGAACTGGATGGATCAGCAAGGACATGGGCAACCCCAATCGATGGGGATGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003700 GO:0003712 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006355 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006814 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008324 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009889 GO:0009987 GO:0010029 GO:0010033 GO:0010099 GO:0010228 GO:0010468 GO:0010476 GO:0010556 GO:0015075 GO:0015077 GO:0015079 GO:0015081 GO:0015318 GO:0015672 GO:0016020 GO:0019219 GO:0019222 GO:0022414 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0034220 GO:0034399 GO:0035725 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046873 GO:0048518 GO:0048571 GO:0048573 GO:0048574 GO:0048580 GO:0048582 GO:0048583 GO:0048584 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051179 GO:0051234 GO:0051239 GO:0051240 GO:0051252 GO:0051716 GO:0055085 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071804 GO:0071805 GO:0071944 GO:0080090 GO:0097305 GO:0097306 GO:0098655 GO:0098660 GO:0098662 GO:0140110 GO:1900140 GO:1901700 GO:1901701 GO:1903506 GO:2000026 GO:2000030 GO:2000112 GO:2000306 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Na_Ca_ex

Protein Analysis

583

Amino Acids

63.24

Weight (kDa)

6.71

Isoelectric Point (pI)

48.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Na_Ca_ex PF01699 83 - 225 6.5e-20 Sodium/calcium exchanger protein
Na_Ca_ex PF01699 380 - 530 2.8e-29 Sodium/calcium exchanger protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012048)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08960
fragaria_vesca FvH4_6g05530 FvH4_6g05530 FvH4_6g05530
malus_domestica MD04G1207600.v1.1 MD12G1221900.v1.1
prunus_persica Prupe.6G328600_v2.0.a1
pyrus_communis pycom04g18380 pycom12g20800
rosa_chinensis RchiOBHm_Chr3g0454301
rosa_laevigata RLG00000025464
rosa_multiflora Rmu_sc0001340.1_g000003
rosa_roxburghii Rroxscaffold_165G00437120
rosa_rugosa Rorug02G0654100
rosa_samantha Rh3AG058000 Rh3BG059700 Rh3CG058900 Rh3DG060200
rosa_wichuraiana Rw3G004440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 399, 555
Acc36I ACCTGC 1 cut(s) 1331
AccB1I GGYRCC 4 cut(s) 386, 449, 467, 1528
AccB7I CCANNNNNTGG 1 cut(s) 1737
AccII CGCG 3 cut(s) 426, 503, 515
AccIII TCCGGA 2 cut(s) 1420, 1607
AclWI GGATC 3 cut(s) 303, 1293, 1715
AcoI YGGCCR 6 cut(s) 3, 354, 534, 573, 833, 1332
AcsI RAATTY 3 cut(s) 998, 1128, 1273
AcuI CTGAAG 2 cut(s) 908, 1611
AcyI GRCGYC 5 cut(s) 344, 387, 396, 450, 552
AdeI CACNNNGTG 1 cut(s) 1515
AfiI CCNNNNNNNGG 7 cut(s) 135, 532, 571, 721, 824, 1330, 1737
AflIII ACRYGT 1 cut(s) 591
AgsI TTSAA 4 cut(s) 23, 196, 1003, 1198
AjnI CCWGG 2 cut(s) 291, 1265
AjuI GAANNNNNNNTTGG 6 cut(s) 79, 111, 176, 208, 311, 343
AloI GAACNNNNNNTCC 2 cut(s) 542, 574
AluBI AGCT 6 cut(s) 322, 892, 1016, 1071, 1435, 1587
AluI AGCT 6 cut(s) 322, 892, 1016, 1071, 1435, 1587
Alw21I GWGCWC 2 cut(s) 1222, 1437
Alw26I GTCTC 5 cut(s) 481, 856, 880, 1565, 1626
AlwI GGATC 3 cut(s) 303, 1293, 1715
Aor13HI TCCGGA 2 cut(s) 1420, 1607
ApeKI GCWGC 2 cut(s) 908, 1208
ApoI RAATTY 3 cut(s) 998, 1128, 1273
AspA2I CCTAGG 1 cut(s) 1532
AspLEI GCGC 4 cut(s) 389, 452, 517, 605
AspS9I GGNCC 3 cut(s) 138, 829, 1355
AsuC2I CCSGG 4 cut(s) 533, 1325, 1354, 1526
AsuHPI GGTGA 6 cut(s) 304, 316, 355, 520, 1408, 1516
AsuII TTCGAA 1 cut(s) 1652
AvaII GGWCC 2 cut(s) 138, 829
AvrII CCTAGG 1 cut(s) 1532
BalI TGGCCA 2 cut(s) 5, 1334
BanI GGYRCC 4 cut(s) 386, 449, 467, 1528
BanII GRGCYC 2 cut(s) 1113, 1437
BarI GAAGNNNNNNTAC 2 cut(s) 1005, 1037
BbsI GAAGAC 1 cut(s) 391
Bbv12I GWGCWC 2 cut(s) 1222, 1437
BbvI GCAGC 2 cut(s) 895, 1195
BccI CCATC 9 cut(s) 14, 62, 461, 670, 1044, 1483, 1698, 1731, 1737
BceAI ACGGC 3 cut(s) 344, 400, 401
BcgI CGANNNNNNTGC 2 cut(s) 427, 461
BciT130I CCWGG 2 cut(s) 293, 1267
BclI TGATCA 1 cut(s) 1506
BcnI CCSGG 4 cut(s) 533, 1325, 1354, 1526
BcoDI GTCTC 5 cut(s) 481, 856, 880, 1565, 1626
BfaI CTAG 3 cut(s) 225, 965, 1533
BfmI CTRYAG 1 cut(s) 1011
BfoI RGCGCY 3 cut(s) 390, 453, 606
BfuAI ACCTGC 1 cut(s) 1331
BisI GCNGC 7 cut(s) 357, 414, 424, 427, 513, 909, 1209
BlnI CCTAGG 1 cut(s) 1532
BlsI GCNGC 7 cut(s) 358, 415, 425, 428, 514, 910, 1210
Bme1390I CCNGG 6 cut(s) 293, 533, 1267, 1325, 1354, 1526
Bme18I GGWCC 2 cut(s) 138, 829
BmgT120I GGNCC 3 cut(s) 138, 829, 1355
BmiI GGNNCC 8 cut(s) 140, 388, 451, 469, 713, 830, 870, 1530
BmrFI CCNGG 6 cut(s) 293, 533, 1267, 1325, 1354, 1526
BmsI GCATC 1 cut(s) 1685
BpiI GAAGAC 1 cut(s) 391
BpmI CTGGAG 3 cut(s) 1206, 1247, 1421
Bpu14I TTCGAA 1 cut(s) 1652
BpuMI CCSGG 4 cut(s) 533, 1325, 1354, 1526
Bsa29I ATCGAT 2 cut(s) 1658, 1735
BsaAI YACGTR 1 cut(s) 592
BsaHI GRCGYC 5 cut(s) 344, 387, 396, 450, 552
BsaI GGTCTC 2 cut(s) 856, 1565
BsaWI WCCGGW 2 cut(s) 1420, 1607
BsaXI ACNNNNNCTCC 4 cut(s) 95, 125, 703, 733
Bsc4I CCNNNNNNNGG 7 cut(s) 135, 532, 571, 721, 824, 1330, 1737
Bse118I RCCGGY 2 cut(s) 440, 464
Bse1I ACTGG 3 cut(s) 872, 1438, 1705
BseAI TCCGGA 2 cut(s) 1420, 1607
BseBI CCWGG 2 cut(s) 293, 1267
BseCI ATCGAT 2 cut(s) 1658, 1735
BseGI GGATG 8 cut(s) 6, 252, 453, 681, 1006, 1676, 1709, 1748
BseLI CCNNNNNNNGG 7 cut(s) 135, 532, 571, 721, 824, 1330, 1737
BseMII CTCAG 3 cut(s) 590, 729, 1113
BseNI ACTGG 3 cut(s) 872, 1438, 1705
BseXI GCAGC 2 cut(s) 895, 1195
BsgI GTGCAG 2 cut(s) 1194, 1537
Bsh1236I CGCG 3 cut(s) 426, 503, 515
BshNI GGYRCC 4 cut(s) 386, 449, 467, 1528
BshVI ATCGAT 2 cut(s) 1658, 1735
BsiHKAI GWGCWC 2 cut(s) 1222, 1437
BslFI GGGAC 2 cut(s) 124, 563
BslI CCNNNNNNNGG 7 cut(s) 135, 532, 571, 721, 824, 1330, 1737
BsmAI GTCTC 5 cut(s) 481, 856, 880, 1565, 1626
BsmBI CGTCTC 1 cut(s) 481
BsmFI GGGAC 2 cut(s) 124, 563
Bso31I GGTCTC 2 cut(s) 856, 1565
Bsp119I TTCGAA 1 cut(s) 1652
Bsp1286I GDGCHC 3 cut(s) 1113, 1222, 1437
Bsp13I TCCGGA 2 cut(s) 1420, 1607
Bsp143I GATC 8 cut(s) 295, 504, 567, 780, 800, 1285, 1506, 1707
Bsp19I CCATGG 2 cut(s) 351, 1335
Bsp68I TCGCGA 1 cut(s) 503
BspCNI CTCAG 3 cut(s) 591, 730, 1114
BspDI ATCGAT 2 cut(s) 1658, 1735
BspEI TCCGGA 2 cut(s) 1420, 1607
BspFNI CGCG 3 cut(s) 426, 503, 515
BspLI GGNNCC 8 cut(s) 140, 388, 451, 469, 713, 830, 870, 1530
BspMI ACCTGC 1 cut(s) 1331
BspPI GGATC 3 cut(s) 303, 1293, 1715
BspT104I TTCGAA 1 cut(s) 1652
BspT107I GGYRCC 4 cut(s) 386, 449, 467, 1528
BspTNI GGTCTC 2 cut(s) 856, 1565
BsrFI RCCGGY 2 cut(s) 440, 464
BsrI ACTGG 3 cut(s) 872, 1438, 1705
BssAI RCCGGY 2 cut(s) 440, 464
BssMI GATC 8 cut(s) 295, 504, 567, 780, 800, 1285, 1506, 1707
BssNI GRCGYC 5 cut(s) 344, 387, 396, 450, 552
BssT1I CCWWGG 5 cut(s) 351, 1311, 1335, 1381, 1532
Bst2UI CCWGG 2 cut(s) 293, 1267
Bst4CI ACNGT 2 cut(s) 1258, 1620
Bst6I CTCTTC 6 cut(s) 19, 68, 197, 215, 272, 590
BstACI GRCGYC 5 cut(s) 344, 387, 396, 450, 552
BstBAI YACGTR 1 cut(s) 592
BstBI TTCGAA 1 cut(s) 1652
BstC8I GCNNGC 4 cut(s) 466, 624, 1069, 1318
BstDEI CTNAG 3 cut(s) 599, 738, 1122
BstDSI CCRYGG 3 cut(s) 351, 424, 1335
BstF5I GGATG 8 cut(s) 6, 252, 453, 681, 1006, 1676, 1709, 1748
BstFNI CGCG 3 cut(s) 426, 503, 515
BstH2I RGCGCY 3 cut(s) 390, 453, 606
BstHHI GCGC 4 cut(s) 389, 452, 517, 605
BstKTI GATC 8 cut(s) 298, 507, 570, 783, 803, 1288, 1509, 1710
BstMAI GTCTC 5 cut(s) 481, 856, 880, 1565, 1626
BstMBI GATC 8 cut(s) 295, 504, 567, 780, 800, 1285, 1506, 1707
BstMWI GCNNNNNNNGC 6 cut(s) 410, 435, 509, 950, 1217, 1301
BstNI CCWGG 2 cut(s) 293, 1267
BstNSI RCATGY 1 cut(s) 1372
BstSCI CCNGG 6 cut(s) 291, 531, 1265, 1323, 1352, 1524
BstSFI CTRYAG 1 cut(s) 1011
BstUI CGCG 3 cut(s) 426, 503, 515
BstV1I GCAGC 2 cut(s) 895, 1195
BstV2I GAAGAC 1 cut(s) 391
BstX2I RGATCY 1 cut(s) 1285
BstYI RGATCY 1 cut(s) 1285
Bsu15I ATCGAT 2 cut(s) 1658, 1735
BsuTUI ATCGAT 2 cut(s) 1658, 1735
BtgI CCRYGG 3 cut(s) 351, 424, 1335
BtsCI GGATG 8 cut(s) 6, 252, 453, 681, 1006, 1676, 1709, 1748
BtuMI TCGCGA 1 cut(s) 503
BveI ACCTGC 1 cut(s) 1331
Cac8I GCNNGC 4 cut(s) 466, 624, 1069, 1318
CfoI GCGC 4 cut(s) 389, 452, 517, 605
Cfr10I RCCGGY 2 cut(s) 440, 464
Cfr13I GGNCC 3 cut(s) 138, 829, 1355
Cfr42I CCGCGG 1 cut(s) 427
ClaI ATCGAT 2 cut(s) 1658, 1735
CseI GACGC 1 cut(s) 352
DdeI CTNAG 3 cut(s) 599, 738, 1122
DinI GGCGCC 2 cut(s) 388, 451
DpnI GATC 8 cut(s) 297, 506, 569, 782, 802, 1287, 1508, 1709
DpnII GATC 8 cut(s) 295, 504, 567, 780, 800, 1285, 1506, 1707
DraIII CACNNNGTG 1 cut(s) 1515
EaeI YGGCCR 6 cut(s) 3, 354, 534, 573, 833, 1332
Eam1104I CTCTTC 6 cut(s) 19, 68, 197, 215, 272, 590
EarI CTCTTC 6 cut(s) 19, 68, 197, 215, 272, 590
EciI GGCGGA 4 cut(s) 410, 451, 469, 708
Ecl136II GAGCTC 1 cut(s) 1435
Eco130I CCWWGG 5 cut(s) 351, 1311, 1335, 1381, 1532
Eco147I AGGCCT 1 cut(s) 1380
Eco24I GRGCYC 2 cut(s) 1113, 1437
Eco31I GGTCTC 2 cut(s) 856, 1565
Eco32I GATATC 1 cut(s) 1173
Eco47I GGWCC 2 cut(s) 138, 829
Eco53kI GAGCTC 1 cut(s) 1435
Eco57I CTGAAG 2 cut(s) 908, 1611
EcoICRI GAGCTC 1 cut(s) 1435
EcoO109I RGGNCCY 1 cut(s) 138
EcoRI GAATTC 1 cut(s) 998
EcoRII CCWGG 2 cut(s) 291, 1265
EcoRV GATATC 1 cut(s) 1173
EcoT14I CCWWGG 5 cut(s) 351, 1311, 1335, 1381, 1532
EcoT38I GRGCYC 2 cut(s) 1113, 1437
EgeI GGCGCC 2 cut(s) 388, 451
EheI GGCGCC 2 cut(s) 388, 451
ErhI CCWWGG 5 cut(s) 351, 1311, 1335, 1381, 1532
Esp3I CGTCTC 1 cut(s) 481
FalI AAGNNNNNCTT 2 cut(s) 311, 343
FaqI GGGAC 2 cut(s) 124, 563
FbaI TGATCA 1 cut(s) 1506
Fnu4HI GCNGC 7 cut(s) 357, 414, 424, 427, 513, 909, 1209
FokI GGATG 6 cut(s) 239, 440, 688, 993, 1663, 1716
FriOI GRGCYC 2 cut(s) 1113, 1437
Fsp4HI GCNGC 7 cut(s) 357, 414, 424, 427, 513, 909, 1209
FspBI CTAG 3 cut(s) 225, 965, 1533
GlaI GCGC 4 cut(s) 388, 451, 516, 604
GluI GCNGC 7 cut(s) 357, 414, 424, 427, 513, 909, 1209
GsuI CTGGAG 3 cut(s) 1206, 1247, 1421
HaeII RGCGCY 3 cut(s) 390, 453, 606
HgaI GACGC 1 cut(s) 352
HhaI GCGC 4 cut(s) 389, 452, 517, 605
Hin1I GRCGYC 5 cut(s) 344, 387, 396, 450, 552
Hin6I GCGC 4 cut(s) 387, 450, 515, 603
HinP1I GCGC 4 cut(s) 387, 450, 515, 603
HincII GTYRAC 1 cut(s) 793
HindII GTYRAC 1 cut(s) 793
HinfI GANTC 3 cut(s) 930, 1521, 1611
HphI GGTGA 6 cut(s) 304, 316, 355, 520, 1408, 1516
Hpy166II GTNNAC 1 cut(s) 793
Hpy188I TCNGA 5 cut(s) 600, 785, 805, 888, 919
Hpy188III TCNNGA 7 cut(s) 502, 673, 842, 1226, 1421, 1456, 1608
Hpy8I GTNNAC 1 cut(s) 793
Hpy99I CGWCG 5 cut(s) 491, 494, 503, 641, 919
HpyAV CCTTC 8 cut(s) 37, 272, 337, 481, 493, 529, 700, 1635
HpyCH4III ACNGT 2 cut(s) 1258, 1620
HpyCH4IV ACGT 5 cut(s) 396, 539, 552, 578, 591
HpyCH4V TGCA 6 cut(s) 751, 984, 1082, 1211, 1463, 1518
HpyF10VI GCNNNNNNNGC 6 cut(s) 410, 435, 509, 950, 1217, 1301
HpyF3I CTNAG 3 cut(s) 599, 738, 1122
HpySE526I ACGT 5 cut(s) 396, 539, 552, 578, 591
Hsp92I GRCGYC 5 cut(s) 344, 387, 396, 450, 552
HspAI GCGC 4 cut(s) 387, 450, 515, 603
KasI GGCGCC 2 cut(s) 386, 449
Kpn2I TCCGGA 2 cut(s) 1420, 1607
KroI GCCGGC 1 cut(s) 464
KroNI GCCGGC 1 cut(s) 466
Ksp22I TGATCA 1 cut(s) 1506
KspI CCGCGG 1 cut(s) 427
Kzo9I GATC 8 cut(s) 295, 504, 567, 780, 800, 1285, 1506, 1707
LmnI GCTCC 5 cut(s) 173, 711, 1076, 1217, 1440
Lsp1109I GCAGC 2 cut(s) 895, 1195
LweI GCATC 1 cut(s) 1685
MaeI CTAG 3 cut(s) 225, 965, 1533
MaeII ACGT 5 cut(s) 396, 539, 552, 578, 591
MaeIII GTNAC 2 cut(s) 310, 361
MalI GATC 8 cut(s) 297, 506, 569, 782, 802, 1287, 1508, 1709
MboI GATC 8 cut(s) 295, 504, 567, 780, 800, 1285, 1506, 1707
MflI RGATCY 1 cut(s) 1285
MhlI GDGCHC 3 cut(s) 1113, 1222, 1437
MlsI TGGCCA 2 cut(s) 5, 1334
MluCI AATT 8 cut(s) 767, 879, 897, 998, 1083, 1128, 1190, 1273
MluNI TGGCCA 2 cut(s) 5, 1334
Mly113I GGCGCC 2 cut(s) 387, 450
MmeI TCCRAC 2 cut(s) 897, 1053
Mox20I TGGCCA 2 cut(s) 5, 1334
MroI TCCGGA 2 cut(s) 1420, 1607
MroNI GCCGGC 1 cut(s) 464
MscI TGGCCA 2 cut(s) 5, 1334
MseI TTAA 1 cut(s) 1365
Msp20I TGGCCA 2 cut(s) 5, 1334
MspA1I CMGCKG 1 cut(s) 426
MspR9I CCNGG 6 cut(s) 293, 533, 1267, 1325, 1354, 1526
MvaI CCWGG 2 cut(s) 293, 1267
MvnI CGCG 3 cut(s) 426, 503, 515
MwoI GCNNNNNNNGC 6 cut(s) 410, 435, 509, 950, 1217, 1301
NaeI GCCGGC 1 cut(s) 466
NarI GGCGCC 2 cut(s) 387, 450
NciI CCSGG 4 cut(s) 533, 1325, 1354, 1526
NcoI CCATGG 2 cut(s) 351, 1335
NdeII GATC 8 cut(s) 295, 504, 567, 780, 800, 1285, 1506, 1707
NgoMIV GCCGGC 1 cut(s) 464
NlaIV GGNNCC 8 cut(s) 140, 388, 451, 469, 713, 830, 870, 1530
NmeAIII GCCGAG 4 cut(s) 357, 551, 631, 843
NmuCI GTSAC 2 cut(s) 310, 361
NruI TCGCGA 1 cut(s) 503
NspI RCATGY 1 cut(s) 1372
NspV TTCGAA 1 cut(s) 1652
PceI AGGCCT 1 cut(s) 1380
PcsI WCGNNNNNNNCGW 2 cut(s) 495, 549
PdiI GCCGGC 1 cut(s) 466
PfeI GAWTC 3 cut(s) 930, 1521, 1611
PflMI CCANNNNNTGG 1 cut(s) 1737
PkrI GCNGC 7 cut(s) 358, 415, 425, 428, 514, 910, 1210
PluTI GGCGCC 2 cut(s) 390, 453
Ppu21I YACGTR 1 cut(s) 592
PpuMI RGGWCCY 1 cut(s) 138
Psp124BI GAGCTC 1 cut(s) 1437
Psp5II RGGWCCY 1 cut(s) 138
Psp6I CCWGG 2 cut(s) 291, 1265
PspGI CCWGG 2 cut(s) 291, 1265
PspN4I GGNNCC 8 cut(s) 140, 388, 451, 469, 713, 830, 870, 1530
PspPI GGNCC 3 cut(s) 138, 829, 1355
PspPPI RGGWCCY 1 cut(s) 138
PsrI GAACNNNNNNTAC 2 cut(s) 852, 884
PsuI RGATCY 1 cut(s) 1285
RruI TCGCGA 1 cut(s) 503
SacI GAGCTC 1 cut(s) 1437
SacII CCGCGG 1 cut(s) 427
SaqAI TTAA 1 cut(s) 1365
SatI GCNGC 7 cut(s) 357, 414, 424, 427, 513, 909, 1209
Sau3AI GATC 8 cut(s) 295, 504, 567, 780, 800, 1285, 1506, 1707
Sau96I GGNCC 3 cut(s) 138, 829, 1355
ScrFI CCNGG 6 cut(s) 293, 533, 1267, 1325, 1354, 1526
SduI GDGCHC 3 cut(s) 1113, 1222, 1437
SfaNI GCATC 1 cut(s) 1685
SfcI CTRYAG 1 cut(s) 1011
SfoI GGCGCC 2 cut(s) 388, 451
Sfr303I CCGCGG 1 cut(s) 427
SfuI TTCGAA 1 cut(s) 1652
SgrBI CCGCGG 1 cut(s) 427
SinI GGWCC 2 cut(s) 138, 829
Sse9I AATT 8 cut(s) 767, 879, 897, 998, 1083, 1128, 1190, 1273
SseBI AGGCCT 1 cut(s) 1380
SspDI GGCGCC 2 cut(s) 386, 449
SspI AATATT 1 cut(s) 949
SspMI CTAG 3 cut(s) 225, 965, 1533
SstI GAGCTC 1 cut(s) 1437
StuI AGGCCT 1 cut(s) 1380
StyD4I CCNGG 6 cut(s) 291, 531, 1265, 1323, 1352, 1524
StyI CCWWGG 5 cut(s) 351, 1311, 1335, 1381, 1532
TaaI ACNGT 2 cut(s) 1258, 1620
TaiI ACGT 5 cut(s) 399, 542, 555, 581, 594
TaqI TCGA 4 cut(s) 1614, 1652, 1658, 1735
TasI AATT 8 cut(s) 767, 879, 897, 998, 1083, 1128, 1190, 1273
TauI GCSGC 5 cut(s) 359, 416, 426, 429, 515
TfiI GAWTC 3 cut(s) 930, 1521, 1611
Tru1I TTAA 1 cut(s) 1365
Tru9I TTAA 1 cut(s) 1365
TseFI GTSAC 2 cut(s) 310, 361
TseI GCWGC 2 cut(s) 908, 1208
Tsp45I GTSAC 2 cut(s) 310, 361
TspDTI ATGAA 3 cut(s) 982, 1079, 1564
Van91I CCANNNNNTGG 1 cut(s) 1737
VpaK11BI GGWCC 2 cut(s) 138, 829
XapI RAATTY 3 cut(s) 998, 1128, 1273
XceI RCATGY 1 cut(s) 1372
XmaJI CCTAGG 1 cut(s) 1532
XspI CTAG 3 cut(s) 225, 965, 1533
ZraI GACGTC 2 cut(s) 397, 553
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.