Belongs to the Ca(2 ) cation antiporter (CaCA) (TC 2.A.19) family
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G08960 |
| fragaria_vesca | FvH4_6g05530 FvH4_6g05530 FvH4_6g05530 |
| malus_domestica | MD04G1207600.v1.1 MD12G1221900.v1.1 |
| prunus_persica | Prupe.6G328600_v2.0.a1 |
| pyrus_communis | pycom04g18380 pycom12g20800 |
| rosa_chinensis | RchiOBHm_Chr3g0454301 |
| rosa_laevigata | RLG00000025464 |
| rosa_multiflora | Rmu_sc0001340.1_g000003 |
| rosa_roxburghii | Rroxscaffold_165G00437120 |
| rosa_rugosa | Rorug02G0654100 |
| rosa_samantha | Rh3AG058000 Rh3BG059700 Rh3CG058900 Rh3DG060200 |
| rosa_wichuraiana | Rw3G004440 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 429 |
| Acc36I | ACCTGC | 1 cut(s) | 41 |
| AccB1I | GGYRCC | 3 cut(s) | 416, 565, 1555 |
| AccBSI | CCGCTC | 1 cut(s) | 556 |
| AccII | CGCG | 6 cut(s) | 188, 404, 443, 482, 545, 995 |
| AccIII | TCCGGA | 1 cut(s) | 450 |
| AclWI | GGATC | 4 cut(s) | 333, 815, 843, 1320 |
| AcoI | YGGCCR | 4 cut(s) | 3, 384, 1345, 1359 |
| AcsI | RAATTY | 3 cut(s) | 774, 1300, 1628 |
| AcuI | CTGAAG | 1 cut(s) | 1448 |
| AcyI | GRCGYC | 3 cut(s) | 417, 426, 566 |
| AfaI | GTAC | 1 cut(s) | 464 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 138, 382, 1357 |
| AflIII | ACRYGT | 2 cut(s) | 814, 963 |
| AgsI | TTSAA | 5 cut(s) | 28, 214, 773, 916, 1056 |
| AjiI | CACGTC | 1 cut(s) | 583 |
| AjnI | CCWGG | 2 cut(s) | 321, 803 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 82, 114, 240, 272 |
| AleI | CACNNNNGTG | 1 cut(s) | 503 |
| AluBI | AGCT | 6 cut(s) | 352, 866, 919, 935, 1098, 1462 |
| AluI | AGCT | 6 cut(s) | 352, 866, 919, 935, 1098, 1462 |
| Alw21I | GWGCWC | 1 cut(s) | 868 |
| Alw26I | GTCTC | 3 cut(s) | 759, 1527, 1592 |
| AlwI | GGATC | 4 cut(s) | 333, 815, 843, 1320 |
| Ama87I | CYCGRG | 2 cut(s) | 880, 1448 |
| Aor13HI | TCCGGA | 1 cut(s) | 450 |
| AoxI | GGCC | 6 cut(s) | 3, 205, 384, 1345, 1359, 1382 |
| ApeKI | GCWGC | 3 cut(s) | 158, 997, 1235 |
| ApoI | RAATTY | 3 cut(s) | 774, 1300, 1628 |
| AspA2I | CCTAGG | 1 cut(s) | 1559 |
| AspLEI | GCGC | 8 cut(s) | 406, 419, 482, 547, 568, 607, 635, 997 |
| AspS9I | GGNCC | 3 cut(s) | 141, 448, 1382 |
| AsuHPI | GGTGA | 6 cut(s) | 334, 385, 930, 1025, 1226, 1543 |
| AvaI | CYCGRG | 2 cut(s) | 880, 1448 |
| AvaII | GGWCC | 2 cut(s) | 141, 448 |
| AvrII | CCTAGG | 1 cut(s) | 1559 |
| BalI | TGGCCA | 3 cut(s) | 5, 1347, 1361 |
| BanI | GGYRCC | 3 cut(s) | 416, 565, 1555 |
| BanII | GRGCYC | 4 cut(s) | 758, 868, 1140, 1281 |
| Bbv12I | GWGCWC | 1 cut(s) | 868 |
| BbvI | GCAGC | 3 cut(s) | 170, 984, 1222 |
| BccI | CCATC | 6 cut(s) | 14, 127, 197, 700, 908, 1510 |
| BceAI | ACGGC | 4 cut(s) | 374, 430, 553, 615 |
| BciT130I | CCWGG | 2 cut(s) | 323, 805 |
| BcoDI | GTCTC | 3 cut(s) | 759, 1527, 1592 |
| BfaI | CTAG | 2 cut(s) | 1253, 1560 |
| BfoI | RGCGCY | 4 cut(s) | 420, 569, 608, 636 |
| BfuAI | ACCTGC | 1 cut(s) | 41 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1075 |
| BisI | GCNGC | 9 cut(s) | 159, 186, 387, 444, 543, 603, 998, 1236, 1262 |
| BlnI | CCTAGG | 1 cut(s) | 1559 |
| BlsI | GCNGC | 9 cut(s) | 160, 187, 388, 445, 544, 604, 999, 1237, 1263 |
| Bme1390I | CCNGG | 2 cut(s) | 323, 805 |
| Bme18I | GGWCC | 2 cut(s) | 141, 448 |
| BmeT110I | CYCGRG | 2 cut(s) | 880, 1448 |
| BmgBI | CACGTC | 1 cut(s) | 583 |
| BmgT120I | GGNCC | 3 cut(s) | 141, 448, 1382 |
| BmiI | GGNNCC | 4 cut(s) | 143, 418, 567, 1557 |
| BmrFI | CCNGG | 2 cut(s) | 323, 805 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 740, 772 |
| BsaBI | GATNNNNATC | 2 cut(s) | 899, 1443 |
| BsaHI | GRCGYC | 3 cut(s) | 417, 426, 566 |
| BsaI | GGTCTC | 2 cut(s) | 1527, 1592 |
| BsaJI | CCNNGG | 7 cut(s) | 186, 321, 1338, 1362, 1419, 1449, 1559 |
| BsaWI | WCCGGW | 1 cut(s) | 450 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 36, 66, 76, 106 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 138, 382, 1357 |
| Bse118I | RCCGGY | 2 cut(s) | 494, 562 |
| Bse3DI | GCAATG | 1 cut(s) | 1362 |
| Bse8I | GATNNNNATC | 2 cut(s) | 899, 1443 |
| BseAI | TCCGGA | 1 cut(s) | 450 |
| BseBI | CCWGG | 2 cut(s) | 323, 805 |
| BseDI | CCNNGG | 7 cut(s) | 186, 321, 1338, 1362, 1419, 1449, 1559 |
| BseGI | GGATG | 4 cut(s) | 282, 303, 711, 1376 |
| BseJI | GATNNNNATC | 2 cut(s) | 899, 1443 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 138, 382, 1357 |
| BseMI | GCAATG | 1 cut(s) | 1362 |
| BseMII | CTCAG | 2 cut(s) | 620, 1499 |
| BseXI | GCAGC | 3 cut(s) | 170, 984, 1222 |
| BseYI | CCCAGC | 2 cut(s) | 377, 1379 |
| BsgI | GTGCAG | 2 cut(s) | 1221, 1564 |
| Bsh1236I | CGCG | 6 cut(s) | 188, 404, 443, 482, 545, 995 |
| Bsh1285I | CGRYCG | 3 cut(s) | 441, 660, 762 |
| BshFI | GGCC | 6 cut(s) | 5, 207, 386, 1347, 1361, 1384 |
| BshNI | GGYRCC | 3 cut(s) | 416, 565, 1555 |
| BsiEI | CGRYCG | 3 cut(s) | 441, 660, 762 |
| BsiHKAI | GWGCWC | 1 cut(s) | 868 |
| BsiHKCI | CYCGRG | 2 cut(s) | 880, 1448 |
| BsiSI | CCGG | 3 cut(s) | 451, 495, 563 |
| BslFI | GGGAC | 2 cut(s) | 127, 593 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 138, 382, 1357 |
| BsmAI | GTCTC | 3 cut(s) | 759, 1527, 1592 |
| BsmFI | GGGAC | 2 cut(s) | 127, 593 |
| BsmI | GAATGC | 1 cut(s) | 36 |
| BsnI | GGCC | 6 cut(s) | 5, 207, 386, 1347, 1361, 1384 |
| Bso31I | GGTCTC | 2 cut(s) | 1527, 1592 |
| BsoBI | CYCGRG | 2 cut(s) | 880, 1448 |
| Bsp1286I | GDGCHC | 4 cut(s) | 758, 868, 1140, 1281 |
| Bsp13I | TCCGGA | 1 cut(s) | 450 |
| Bsp143I | GATC | 6 cut(s) | 325, 438, 807, 835, 876, 1312 |
| Bsp19I | CCATGG | 1 cut(s) | 1362 |
| BspANI | GGCC | 6 cut(s) | 5, 207, 386, 1347, 1361, 1384 |
| BspCNI | CTCAG | 2 cut(s) | 621, 1500 |
| BspEI | TCCGGA | 1 cut(s) | 450 |
| BspFNI | CGCG | 6 cut(s) | 188, 404, 443, 482, 545, 995 |
| BspLI | GGNNCC | 4 cut(s) | 143, 418, 567, 1557 |
| BspMI | ACCTGC | 1 cut(s) | 41 |
| BspPI | GGATC | 4 cut(s) | 333, 815, 843, 1320 |
| BspQI | GCTCTTC | 1 cut(s) | 1275 |
| BspT107I | GGYRCC | 3 cut(s) | 416, 565, 1555 |
| BspTNI | GGTCTC | 2 cut(s) | 1527, 1592 |
| BsrBI | CCGCTC | 1 cut(s) | 556 |
| BsrDI | GCAATG | 1 cut(s) | 1362 |
| BsrFI | RCCGGY | 2 cut(s) | 494, 562 |
| BssAI | RCCGGY | 2 cut(s) | 494, 562 |
| BssECI | CCNNGG | 7 cut(s) | 186, 321, 1338, 1362, 1419, 1449, 1559 |
| BssMI | GATC | 6 cut(s) | 325, 438, 807, 835, 876, 1312 |
| BssNI | GRCGYC | 3 cut(s) | 417, 426, 566 |
| BssT1I | CCWWGG | 4 cut(s) | 1338, 1362, 1419, 1559 |
| Bst2UI | CCWGG | 2 cut(s) | 323, 805 |
| Bst4CI | ACNGT | 1 cut(s) | 1285 |
| Bst6I | CTCTTC | 5 cut(s) | 74, 215, 245, 302, 1275 |
| BstACI | GRCGYC | 3 cut(s) | 417, 426, 566 |
| BstC8I | GCNNGC | 7 cut(s) | 496, 654, 754, 1009, 1096, 1266, 1345 |
| BstDEI | CTNAG | 2 cut(s) | 629, 1508 |
| BstDSI | CCRYGG | 2 cut(s) | 186, 1362 |
| BstEII | GGTNACC | 1 cut(s) | 190 |
| BstF5I | GGATG | 4 cut(s) | 282, 303, 711, 1376 |
| BstFNI | CGCG | 6 cut(s) | 188, 404, 443, 482, 545, 995 |
| BstH2I | RGCGCY | 4 cut(s) | 420, 569, 608, 636 |
| BstHHI | GCGC | 8 cut(s) | 406, 419, 482, 547, 568, 607, 635, 997 |
| BstKTI | GATC | 6 cut(s) | 328, 441, 810, 838, 879, 1315 |
| BstMAI | GTCTC | 3 cut(s) | 759, 1527, 1592 |
| BstMBI | GATC | 6 cut(s) | 325, 438, 807, 835, 876, 1312 |
| BstMCI | CGRYCG | 3 cut(s) | 441, 660, 762 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 158, 243, 440, 539, 553, 977, 1075, 1165, 1328 |
| BstNI | CCWGG | 2 cut(s) | 323, 805 |
| BstNSI | RCATGY | 3 cut(s) | 818, 967, 1399 |
| BstPI | GGTNACC | 1 cut(s) | 190 |
| BstSCI | CCNGG | 2 cut(s) | 321, 803 |
| BstUI | CGCG | 6 cut(s) | 188, 404, 443, 482, 545, 995 |
| BstV1I | GCAGC | 3 cut(s) | 170, 984, 1222 |
| BstX2I | RGATCY | 1 cut(s) | 1312 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 203 |
| BstYI | RGATCY | 1 cut(s) | 1312 |
| BsuRI | GGCC | 6 cut(s) | 5, 207, 386, 1347, 1361, 1384 |
| BtgI | CCRYGG | 2 cut(s) | 186, 1362 |
| BtgZI | GCGATG | 1 cut(s) | 133 |
| BtrI | CACGTC | 1 cut(s) | 583 |
| BtsCI | GGATG | 4 cut(s) | 282, 303, 711, 1376 |
| BveI | ACCTGC | 1 cut(s) | 41 |
| Cac8I | GCNNGC | 7 cut(s) | 496, 654, 754, 1009, 1096, 1266, 1345 |
| CfoI | GCGC | 8 cut(s) | 406, 419, 482, 547, 568, 607, 635, 997 |
| Cfr10I | RCCGGY | 2 cut(s) | 494, 562 |
| Cfr13I | GGNCC | 3 cut(s) | 141, 448, 1382 |
| Cfr42I | CCGCGG | 1 cut(s) | 189 |
| CpoI | CGGWCCG | 1 cut(s) | 448 |
| Csp6I | GTAC | 1 cut(s) | 463 |
| CspI | CGGWCCG | 1 cut(s) | 448 |
| CviQI | GTAC | 1 cut(s) | 463 |
| DdeI | CTNAG | 2 cut(s) | 629, 1508 |
| DinI | GGCGCC | 2 cut(s) | 418, 567 |
| DpnI | GATC | 6 cut(s) | 327, 440, 809, 837, 878, 1314 |
| DpnII | GATC | 6 cut(s) | 325, 438, 807, 835, 876, 1312 |
| EaeI | YGGCCR | 4 cut(s) | 3, 384, 1345, 1359 |
| Eam1104I | CTCTTC | 5 cut(s) | 74, 215, 245, 302, 1275 |
| EarI | CTCTTC | 5 cut(s) | 74, 215, 245, 302, 1275 |
| EciI | GGCGGA | 3 cut(s) | 172, 233, 481 |
| Ecl136II | GAGCTC | 1 cut(s) | 866 |
| Eco130I | CCWWGG | 4 cut(s) | 1338, 1362, 1419, 1559 |
| Eco24I | GRGCYC | 4 cut(s) | 758, 868, 1140, 1281 |
| Eco31I | GGTCTC | 2 cut(s) | 1527, 1592 |
| Eco32I | GATATC | 1 cut(s) | 1200 |
| Eco47I | GGWCC | 2 cut(s) | 141, 448 |
| Eco53kI | GAGCTC | 1 cut(s) | 866 |
| Eco57I | CTGAAG | 1 cut(s) | 1448 |
| Eco88I | CYCGRG | 2 cut(s) | 880, 1448 |
| Eco91I | GGTNACC | 1 cut(s) | 190 |
| EcoICRI | GAGCTC | 1 cut(s) | 866 |
| EcoO109I | RGGNCCY | 1 cut(s) | 141 |
| EcoO65I | GGTNACC | 1 cut(s) | 190 |
| EcoRII | CCWGG | 2 cut(s) | 321, 803 |
| EcoRV | GATATC | 1 cut(s) | 1200 |
| EcoT14I | CCWWGG | 4 cut(s) | 1338, 1362, 1419, 1559 |
| EcoT38I | GRGCYC | 4 cut(s) | 758, 868, 1140, 1281 |
| EgeI | GGCGCC | 2 cut(s) | 418, 567 |
| EheI | GGCGCC | 2 cut(s) | 418, 567 |
| ErhI | CCWWGG | 4 cut(s) | 1338, 1362, 1419, 1559 |
| FaqI | GGGAC | 2 cut(s) | 127, 593 |
| FauI | CCCGC | 1 cut(s) | 745 |
| FauNDI | CATATG | 2 cut(s) | 1435, 1456 |
| Fnu4HI | GCNGC | 9 cut(s) | 159, 186, 387, 444, 543, 603, 998, 1236, 1262 |
| FokI | GGATG | 4 cut(s) | 269, 290, 718, 1383 |
| FriOI | GRGCYC | 4 cut(s) | 758, 868, 1140, 1281 |
| Fsp4HI | GCNGC | 9 cut(s) | 159, 186, 387, 444, 543, 603, 998, 1236, 1262 |
| FspBI | CTAG | 2 cut(s) | 1253, 1560 |
| GlaI | GCGC | 8 cut(s) | 405, 418, 481, 546, 567, 606, 634, 996 |
| GluI | GCNGC | 9 cut(s) | 159, 186, 387, 444, 543, 603, 998, 1236, 1262 |
| GsaI | CCCAGC | 2 cut(s) | 381, 1383 |
| HaeII | RGCGCY | 4 cut(s) | 420, 569, 608, 636 |
| HaeIII | GGCC | 6 cut(s) | 5, 207, 386, 1347, 1361, 1384 |
| HapII | CCGG | 3 cut(s) | 451, 495, 563 |
| HhaI | GCGC | 8 cut(s) | 406, 419, 482, 547, 568, 607, 635, 997 |
| Hin1I | GRCGYC | 3 cut(s) | 417, 426, 566 |
| Hin6I | GCGC | 8 cut(s) | 404, 417, 480, 545, 566, 605, 633, 995 |
| HinP1I | GCGC | 8 cut(s) | 404, 417, 480, 545, 566, 605, 633, 995 |
| HindIII | AAGCTT | 1 cut(s) | 933 |
| HinfI | GANTC | 5 cut(s) | 484, 800, 895, 957, 1572 |
| HpaII | CCGG | 3 cut(s) | 451, 495, 563 |
| HphI | GGTGA | 6 cut(s) | 334, 385, 930, 1025, 1226, 1543 |
| Hpy188III | TCNNGA | 5 cut(s) | 451, 880, 882, 1253, 1448 |
| HpyAV | CCTTC | 3 cut(s) | 70, 835, 951 |
| HpyCH4III | ACNGT | 1 cut(s) | 1285 |
| HpyCH4IV | ACGT | 2 cut(s) | 426, 582 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 158, 243, 440, 539, 553, 977, 1075, 1165, 1328 |
| HpyF3I | CTNAG | 2 cut(s) | 629, 1508 |
| HpySE526I | ACGT | 2 cut(s) | 426, 582 |
| Hsp92I | GRCGYC | 3 cut(s) | 417, 426, 566 |
| HspAI | GCGC | 8 cut(s) | 404, 417, 480, 545, 566, 605, 633, 995 |
| KasI | GGCGCC | 2 cut(s) | 416, 565 |
| Kpn2I | TCCGGA | 1 cut(s) | 450 |
| KroI | GCCGGC | 1 cut(s) | 494 |
| KroNI | GCCGGC | 1 cut(s) | 496 |
| KspI | CCGCGG | 1 cut(s) | 189 |
| Kzo9I | GATC | 6 cut(s) | 325, 438, 807, 835, 876, 1312 |
| LguI | GCTCTTC | 1 cut(s) | 1275 |
| LmnI | GCTCC | 3 cut(s) | 182, 951, 1103 |
| Lsp1109I | GCAGC | 3 cut(s) | 170, 984, 1222 |
| MaeI | CTAG | 2 cut(s) | 1253, 1560 |
| MaeII | ACGT | 2 cut(s) | 426, 582 |
| MaeIII | GTNAC | 3 cut(s) | 190, 340, 391 |
| MalI | GATC | 6 cut(s) | 327, 440, 809, 837, 878, 1314 |
| MbiI | CCGCTC | 1 cut(s) | 556 |
| MboI | GATC | 6 cut(s) | 325, 438, 807, 835, 876, 1312 |
| MboII | GAAGA | 8 cut(s) | 55, 61, 64, 202, 232, 289, 1106, 1262 |
| MflI | RGATCY | 1 cut(s) | 1312 |
| MhlI | GDGCHC | 4 cut(s) | 758, 868, 1140, 1281 |
| MlsI | TGGCCA | 3 cut(s) | 5, 1347, 1361 |
| MluCI | AATT | 6 cut(s) | 97, 774, 924, 1217, 1300, 1628 |
| MluNI | TGGCCA | 3 cut(s) | 5, 1347, 1361 |
| Mly113I | GGCGCC | 2 cut(s) | 417, 566 |
| MmeI | TCCRAC | 1 cut(s) | 742 |
| Mox20I | TGGCCA | 3 cut(s) | 5, 1347, 1361 |
| MroI | TCCGGA | 1 cut(s) | 450 |
| MroNI | GCCGGC | 1 cut(s) | 494 |
| MscI | TGGCCA | 3 cut(s) | 5, 1347, 1361 |
| MseI | TTAA | 2 cut(s) | 1029, 1392 |
| MslI | CAYNNNNRTG | 2 cut(s) | 201, 503 |
| Msp20I | TGGCCA | 3 cut(s) | 5, 1347, 1361 |
| MspA1I | CMGCKG | 1 cut(s) | 188 |
| MspI | CCGG | 3 cut(s) | 451, 495, 563 |
| MspR9I | CCNGG | 2 cut(s) | 323, 805 |
| Mva1269I | GAATGC | 1 cut(s) | 36 |
| MvaI | CCWGG | 2 cut(s) | 323, 805 |
| MvnI | CGCG | 6 cut(s) | 188, 404, 443, 482, 545, 995 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 158, 243, 440, 539, 553, 977, 1075, 1165, 1328 |
| NaeI | GCCGGC | 1 cut(s) | 496 |
| NarI | GGCGCC | 2 cut(s) | 417, 566 |
| NcoI | CCATGG | 1 cut(s) | 1362 |
| NdeI | CATATG | 2 cut(s) | 1435, 1456 |
| NdeII | GATC | 6 cut(s) | 325, 438, 807, 835, 876, 1312 |
| NgoMIV | GCCGGC | 1 cut(s) | 494 |
| NlaIV | GGNNCC | 4 cut(s) | 143, 418, 567, 1557 |
| NmeAIII | GCCGAG | 1 cut(s) | 661 |
| NmuCI | GTSAC | 2 cut(s) | 340, 391 |
| NspI | RCATGY | 3 cut(s) | 818, 967, 1399 |
| OliI | CACNNNNGTG | 1 cut(s) | 503 |
| PaeR7I | CTCGAG | 1 cut(s) | 880 |
| PciI | ACATGT | 2 cut(s) | 814, 963 |
| PciSI | GCTCTTC | 1 cut(s) | 1275 |
| PctI | GAATGC | 1 cut(s) | 36 |
| PdiI | GCCGGC | 1 cut(s) | 496 |
| PfeI | GAWTC | 5 cut(s) | 484, 800, 895, 957, 1572 |
| PfoI | TCCNGGA | 1 cut(s) | 803 |
| PkrI | GCNGC | 9 cut(s) | 160, 187, 388, 445, 544, 604, 999, 1237, 1263 |
| Ple19I | CGATCG | 1 cut(s) | 441 |
| PluTI | GGCGCC | 2 cut(s) | 420, 569 |
| PpuMI | RGGWCCY | 1 cut(s) | 141 |
| PscI | ACATGT | 2 cut(s) | 814, 963 |
| Psp124BI | GAGCTC | 1 cut(s) | 868 |
| Psp5II | RGGWCCY | 1 cut(s) | 141 |
| Psp6I | CCWGG | 2 cut(s) | 321, 803 |
| PspEI | GGTNACC | 1 cut(s) | 190 |
| PspFI | CCCAGC | 2 cut(s) | 377, 1379 |
| PspGI | CCWGG | 2 cut(s) | 321, 803 |
| PspN4I | GGNNCC | 4 cut(s) | 143, 418, 567, 1557 |
| PspPI | GGNCC | 3 cut(s) | 141, 448, 1382 |
| PspPPI | RGGWCCY | 1 cut(s) | 141 |
| PsuI | RGATCY | 1 cut(s) | 1312 |
| PvuI | CGATCG | 1 cut(s) | 441 |
| RsaI | GTAC | 1 cut(s) | 464 |
| RsaNI | GTAC | 1 cut(s) | 463 |
| RseI | CAYNNNNRTG | 2 cut(s) | 201, 503 |
| Rsr2I | CGGWCCG | 1 cut(s) | 448 |
| RsrII | CGGWCCG | 1 cut(s) | 448 |
| SacI | GAGCTC | 1 cut(s) | 868 |
| SacII | CCGCGG | 1 cut(s) | 189 |
| SapI | GCTCTTC | 1 cut(s) | 1275 |
| SaqAI | TTAA | 2 cut(s) | 1029, 1392 |
| SatI | GCNGC | 9 cut(s) | 159, 186, 387, 444, 543, 603, 998, 1236, 1262 |
| Sau3AI | GATC | 6 cut(s) | 325, 438, 807, 835, 876, 1312 |
| Sau96I | GGNCC | 3 cut(s) | 141, 448, 1382 |
| ScrFI | CCNGG | 2 cut(s) | 323, 805 |
| SduI | GDGCHC | 4 cut(s) | 758, 868, 1140, 1281 |
| SfoI | GGCGCC | 2 cut(s) | 418, 567 |
| Sfr274I | CTCGAG | 1 cut(s) | 880 |
| Sfr303I | CCGCGG | 1 cut(s) | 189 |
| SgrBI | CCGCGG | 1 cut(s) | 189 |
| SinI | GGWCC | 2 cut(s) | 141, 448 |
| SlaI | CTCGAG | 1 cut(s) | 880 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 201, 503 |
| SmlI | CTYRAG | 1 cut(s) | 880 |
| SmoI | CTYRAG | 1 cut(s) | 880 |
| Sse9I | AATT | 6 cut(s) | 97, 774, 924, 1217, 1300, 1628 |
| SspDI | GGCGCC | 2 cut(s) | 416, 565 |
| SspI | AATATT | 1 cut(s) | 976 |
| SspMI | CTAG | 2 cut(s) | 1253, 1560 |
| SstI | GAGCTC | 1 cut(s) | 868 |
| StyD4I | CCNGG | 2 cut(s) | 321, 803 |
| StyI | CCWWGG | 4 cut(s) | 1338, 1362, 1419, 1559 |
| TaaI | ACNGT | 1 cut(s) | 1285 |
| TaiI | ACGT | 2 cut(s) | 429, 585 |
| TaqI | TCGA | 3 cut(s) | 366, 437, 881 |
| TaqII | GACCGA | 1 cut(s) | 748 |
| TasI | AATT | 6 cut(s) | 97, 774, 924, 1217, 1300, 1628 |
| TauI | GCSGC | 6 cut(s) | 188, 389, 446, 545, 605, 1264 |
| TfiI | GAWTC | 5 cut(s) | 484, 800, 895, 957, 1572 |
| Tru1I | TTAA | 2 cut(s) | 1029, 1392 |
| Tru9I | TTAA | 2 cut(s) | 1029, 1392 |
| TseFI | GTSAC | 2 cut(s) | 340, 391 |
| TseI | GCWGC | 3 cut(s) | 158, 997, 1235 |
| Tsp45I | GTSAC | 2 cut(s) | 340, 391 |
| TspDTI | ATGAA | 2 cut(s) | 1009, 1106 |
| VpaK11BI | GGWCC | 2 cut(s) | 141, 448 |
| XapI | RAATTY | 3 cut(s) | 774, 1300, 1628 |
| XbaI | TCTAGA | 1 cut(s) | 1252 |
| XceI | RCATGY | 3 cut(s) | 818, 967, 1399 |
| XhoI | CTCGAG | 1 cut(s) | 880 |
| XmaJI | CCTAGG | 1 cut(s) | 1559 |
| XspI | CTAG | 2 cut(s) | 1253, 1560 |
| ZraI | GACGTC | 1 cut(s) | 427 |