FvH4_6g05530

Belongs to the Ca(2 ) cation antiporter (CaCA) (TC 2.A.19) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0012048
Physical Location & Seq
Forward (+)
3141555 .. 3145622
4068 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g05530.t1

Sequence Viewer

Length: 1590 bp
ATGGCCAACCTCTCCTCCACCTTCAAATCCTTCACTCTCTCCCTCACACTCCTCTCCTCCTTCCTCTTCTTCCTCCTCCTCCCAACTCCCCATTCCCCAAACTACCCCTCCCCTTCTCCCCTAATCCCTCACAGGTCCCTCCTCCCAACCACCCCTTCTTCCTCCTCCTCCAATGGCCTCTTCAACTACCAAAACCCTAACCTCTCCCTCCCTTCCCTCCTCCTCATCCTCCTCCTCCTCTTCTACCTCCTCATCAAAACCGCCCAGGACCACTTCTCCCTCGTCACCACCAAGCTCACCTCCGCCCTCAACCTCACCCCCTCCATGGCCGCCGTCACCCTCCTCGCCCTCGGCAACGGCGCCCCCGACGTCTTCGCCTCCCTCGCCGCCGTCCGCCGCGGCAACTACCGCACCGGCTTCGGCGCCATCCTCTCCGCCGGCGCCTTCGTCTCCGCTTTCGTCGTCGGTTTCGTCGCGATCTACGCCGCGCCCTTCTCCCTCAGCCCCGCCACGTTCGTCCGTGACGTCATGTTTTACCTGATCTCGGCGACGTTCTTGTTCTACGTGTACCTGAGCGCCGAGATTTACTTGTGGCAGGCGGTGGGGTTTGTTGGGTTCTACTTGTTCTTTGTGGGGTTTGTGTTCTGGATGGACTTGGGGTTGGGCGGCGGCGGAGGAGGAGGAGAGAAGAGGGGCCGGAGTGAGGTGGCGGAGAGTGAAATGCAGAAGGGGTTTGTTGCGGTGGACTGCGAGATCGGAGGAGTTGAGAAGAGATCGGAGGAAATGGAGAACCCGAGTTTCGGGGTCCGGCGGGTAATGGAAATGGTCTCAAAAGTATGGGAGGTTCCAGTCTCAGTTCTTCTGAAGCTGACCATTCCACAAGCTGCCCCATCGGAGTGGAGTAGATTCTACACATCAGCCAATATTGCTCTGTGCCCTCTAGCGCTTCTATACTCTTGCAACGCGTTCATGGAATTCAGTCATCCCGTAGCTTTTCTCCTTTCCAACACCCATCTTCCACTATGGTTTGTTGTATTCTTGGCAAGCTCCTCTCTTGCACTTCTTCATTATATAATAGAGAAAGAGCCCCCCAAAACCGAGCAAATTCCTGTATTGCTTATAGCATTTGTTATGAGTGTCGTTTGGATATCCACTACTGCTGGAGAATTGTTGAACTGCCTTGCTGCACTTGGAGCACTTCTGGAGTTGCCACCAGCACTTCTTGGGCTTACGGTTCTTGCCTGGGGAAATTCTGTGGGGGATCTTGTTGCTGATGTGGCAGTTGCCAAGGCAGGCCACCCTGCAATGGCCATGGCAGGGTGCTTTGCCGGGCCAATGTTTAACATGCTTGTTGGCCTTGGATCAGCATTGGTGATACAGACCTCTAATGTTTATCCGGAAGCGTATGAGCTCCAGTTCCATGTGGGTATTGTGATTGCATTTGTGTTCCTGCTTTTGAGCTTGATGGGTTCTCTATTGGTGATCACATGGTGCAGATTCCGGGTGCCTAGGTTCTGGGGTTTCTGTCTTGTTGGACTCTATGTCGTTTTCATGGCAGTCAGCTTACTGATTGCCAAGTTTTCGGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003700 GO:0003712 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006355 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006814 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008324 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009889 GO:0009987 GO:0010029 GO:0010033 GO:0010099 GO:0010228 GO:0010468 GO:0010476 GO:0010556 GO:0015075 GO:0015077 GO:0015079 GO:0015081 GO:0015318 GO:0015672 GO:0016020 GO:0019219 GO:0019222 GO:0022414 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0034220 GO:0034399 GO:0035725 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046873 GO:0048518 GO:0048571 GO:0048573 GO:0048574 GO:0048580 GO:0048582 GO:0048583 GO:0048584 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051179 GO:0051234 GO:0051239 GO:0051240 GO:0051252 GO:0051716 GO:0055085 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071804 GO:0071805 GO:0071944 GO:0080090 GO:0097305 GO:0097306 GO:0098655 GO:0098660 GO:0098662 GO:0140110 GO:1900140 GO:1901700 GO:1901701 GO:1903506 GO:2000026 GO:2000030 GO:2000112 GO:2000306 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Na_Ca_ex

Protein Analysis

530

Amino Acids

57.28

Weight (kDa)

6.45

Isoelectric Point (pI)

43.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Na_Ca_ex PF01699 74 - 216 3.3e-20 Sodium/calcium exchanger protein
Na_Ca_ex PF01699 372 - 522 7.6e-30 Sodium/calcium exchanger protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012048)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08960
fragaria_vesca FvH4_6g05530 FvH4_6g05530 FvH4_6g05530
malus_domestica MD04G1207600.v1.1 MD12G1221900.v1.1
prunus_persica Prupe.6G328600_v2.0.a1
pyrus_communis pycom04g18380 pycom12g20800
rosa_chinensis RchiOBHm_Chr3g0454301
rosa_laevigata RLG00000025464
rosa_multiflora Rmu_sc0001340.1_g000003
rosa_roxburghii Rroxscaffold_165G00437120
rosa_rugosa Rorug02G0654100
rosa_samantha Rh3AG058000 Rh3BG059700 Rh3CG058900 Rh3DG060200
rosa_wichuraiana Rw3G004440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 372, 528
AccB1I GGYRCC 4 cut(s) 359, 422, 440, 1504
AccII CGCG 4 cut(s) 399, 476, 488, 965
AccIII TCCGGA 1 cut(s) 1396
AclWI GGATC 2 cut(s) 1269, 1369
AcoI YGGCCR 3 cut(s) 3, 327, 1308
AcsI RAATTY 3 cut(s) 974, 1104, 1249
AcuI CTGAAG 1 cut(s) 884
AcyI GRCGYC 5 cut(s) 360, 369, 423, 441, 525
AdeI CACNNNGTG 1 cut(s) 1491
AfaI GTAC 1 cut(s) 569
AfeI AGCGCT 1 cut(s) 945
AfiI CCNNNNNNNGG 6 cut(s) 325, 544, 703, 800, 1306, 1317
AflIII ACRYGT 2 cut(s) 564, 963
AgsI TTSAA 3 cut(s) 25, 184, 1174
AhdI GACNNNNNGTC 1 cut(s) 1541
AjnI CCWGG 2 cut(s) 264, 1241
AjuI GAANNNNNNNTTGG 6 cut(s) 76, 108, 139, 164, 171, 196
AluBI AGCT 8 cut(s) 295, 868, 884, 992, 1047, 1411, 1461, 1563
AluI AGCT 8 cut(s) 295, 868, 884, 992, 1047, 1411, 1461, 1563
Alw21I GWGCWC 2 cut(s) 1198, 1413
Alw26I GTCTC 3 cut(s) 454, 832, 856
AlwI GGATC 2 cut(s) 1269, 1369
Ama87I CYCGRG 1 cut(s) 793
Aor13HI TCCGGA 1 cut(s) 1396
Aor51HI AGCGCT 1 cut(s) 945
AoxI GGCC 8 cut(s) 3, 175, 327, 694, 1294, 1308, 1331, 1354
ApeKI GCWGC 2 cut(s) 884, 1184
ApoI RAATTY 3 cut(s) 974, 1104, 1249
AspA2I CCTAGG 1 cut(s) 1508
AspLEI GCGC 6 cut(s) 362, 425, 443, 490, 578, 946
AspS9I GGNCC 5 cut(s) 135, 268, 694, 805, 1331
AsuC2I CCSGG 2 cut(s) 1330, 1502
AsuHPI GGTGA 6 cut(s) 277, 289, 307, 328, 1384, 1492
AvaI CYCGRG 1 cut(s) 793
AvaII GGWCC 3 cut(s) 135, 268, 805
AvrII CCTAGG 1 cut(s) 1508
BaeGI GKGCMC 1 cut(s) 938
BalI TGGCCA 2 cut(s) 5, 1310
BanI GGYRCC 4 cut(s) 359, 422, 440, 1504
BanII GRGCYC 2 cut(s) 1089, 1413
BbsI GAAGAC 1 cut(s) 364
Bbv12I GWGCWC 2 cut(s) 1198, 1413
BbvCI CCTCAGC 1 cut(s) 500
BbvI GCAGC 2 cut(s) 871, 1171
BccI CCATC 5 cut(s) 434, 643, 898, 1020, 1459
BceAI ACGGC 3 cut(s) 317, 373, 374
BcgI CGANNNNNNTGC 2 cut(s) 400, 434
BciT130I CCWGG 2 cut(s) 266, 1243
BclI TGATCA 1 cut(s) 1482
BcnI CCSGG 2 cut(s) 1330, 1502
BcoDI GTCTC 3 cut(s) 454, 832, 856
BfaI CTAG 2 cut(s) 941, 1509
BfoI RGCGCY 5 cut(s) 363, 426, 444, 579, 947
BisI GCNGC 9 cut(s) 330, 387, 397, 400, 486, 667, 670, 885, 1185
BlnI CCTAGG 1 cut(s) 1508
BlsI GCNGC 9 cut(s) 331, 388, 398, 401, 487, 668, 671, 886, 1186
Bme1390I CCNGG 4 cut(s) 266, 1243, 1330, 1502
Bme18I GGWCC 3 cut(s) 135, 268, 805
BmeRI GACNNNNNGTC 1 cut(s) 1541
BmeT110I CYCGRG 1 cut(s) 793
BmgT120I GGNCC 5 cut(s) 135, 268, 694, 805, 1331
BmiI GGNNCC 8 cut(s) 137, 361, 424, 442, 695, 806, 846, 1506
BmrFI CCNGG 4 cut(s) 266, 1243, 1330, 1502
BpiI GAAGAC 1 cut(s) 364
BpmI CTGGAG 3 cut(s) 1182, 1223, 1397
Bpu10I CCTNAGC 2 cut(s) 500, 572
BpuMI CCSGG 2 cut(s) 1330, 1502
BsaAI YACGTR 1 cut(s) 565
BsaHI GRCGYC 5 cut(s) 360, 369, 423, 441, 525
BsaI GGTCTC 1 cut(s) 832
BsaJI CCNNGG 9 cut(s) 264, 324, 349, 397, 1242, 1287, 1311, 1357, 1508
BsaWI WCCGGW 1 cut(s) 1396
BsaXI ACNNNNNCTCC 5 cut(s) 29, 92, 122, 260, 290
Bsc4I CCNNNNNNNGG 6 cut(s) 325, 544, 703, 800, 1306, 1317
Bse118I RCCGGY 2 cut(s) 413, 437
Bse1I ACTGG 2 cut(s) 848, 1414
Bse3DI GCAATG 1 cut(s) 1311
BseAI TCCGGA 1 cut(s) 1396
BseBI CCWGG 2 cut(s) 266, 1243
BseDI CCNNGG 9 cut(s) 264, 324, 349, 397, 1242, 1287, 1311, 1357, 1508
BseGI GGATG 4 cut(s) 225, 426, 654, 982
BseLI CCNNNNNNNGG 6 cut(s) 325, 544, 703, 800, 1306, 1317
BseMI GCAATG 1 cut(s) 1311
BseMII CTCAG 3 cut(s) 514, 563, 867
BseNI ACTGG 2 cut(s) 848, 1414
BseSI GKGCMC 1 cut(s) 938
BseXI GCAGC 2 cut(s) 871, 1171
BsgI GTGCAG 2 cut(s) 1170, 1513
Bsh1236I CGCG 4 cut(s) 399, 476, 488, 965
BshFI GGCC 8 cut(s) 5, 177, 329, 696, 1296, 1310, 1333, 1356
BshNI GGYRCC 4 cut(s) 359, 422, 440, 1504
BsiHKAI GWGCWC 2 cut(s) 1198, 1413
BsiHKCI CYCGRG 1 cut(s) 793
BsiSI CCGG 7 cut(s) 414, 438, 697, 808, 1329, 1397, 1501
BslFI GGGAC 1 cut(s) 121
BslI CCNNNNNNNGG 6 cut(s) 325, 544, 703, 800, 1306, 1317
BsmAI GTCTC 3 cut(s) 454, 832, 856
BsmBI CGTCTC 1 cut(s) 454
BsmFI GGGAC 1 cut(s) 121
BsnI GGCC 8 cut(s) 5, 177, 329, 696, 1296, 1310, 1333, 1356
Bso31I GGTCTC 1 cut(s) 832
BsoBI CYCGRG 1 cut(s) 793
Bsp1286I GDGCHC 4 cut(s) 938, 1089, 1198, 1413
Bsp13I TCCGGA 1 cut(s) 1396
Bsp143I GATC 7 cut(s) 477, 540, 753, 773, 1261, 1361, 1482
Bsp19I CCATGG 2 cut(s) 324, 1311
Bsp68I TCGCGA 1 cut(s) 476
BspANI GGCC 8 cut(s) 5, 177, 329, 696, 1296, 1310, 1333, 1356
BspCNI CTCAG 3 cut(s) 513, 564, 866
BspEI TCCGGA 1 cut(s) 1396
BspFNI CGCG 4 cut(s) 399, 476, 488, 965
BspLI GGNNCC 8 cut(s) 137, 361, 424, 442, 695, 806, 846, 1506
BspPI GGATC 2 cut(s) 1269, 1369
BspT107I GGYRCC 4 cut(s) 359, 422, 440, 1504
BspTNI GGTCTC 1 cut(s) 832
BsrDI GCAATG 1 cut(s) 1311
BsrFI RCCGGY 2 cut(s) 413, 437
BsrI ACTGG 2 cut(s) 848, 1414
BssAI RCCGGY 2 cut(s) 413, 437
BssECI CCNNGG 9 cut(s) 264, 324, 349, 397, 1242, 1287, 1311, 1357, 1508
BssMI GATC 7 cut(s) 477, 540, 753, 773, 1261, 1361, 1482
BssNI GRCGYC 5 cut(s) 360, 369, 423, 441, 525
BssT1I CCWWGG 5 cut(s) 324, 1287, 1311, 1357, 1508
Bst2UI CCWGG 2 cut(s) 266, 1243
Bst4CI ACNGT 1 cut(s) 1234
Bst6I CTCTTC 5 cut(s) 71, 185, 245, 683, 764
BstACI GRCGYC 5 cut(s) 360, 369, 423, 441, 525
BstBAI YACGTR 1 cut(s) 565
BstC8I GCNNGC 4 cut(s) 439, 597, 1045, 1294
BstDEI CTNAG 3 cut(s) 500, 572, 853
BstDSI CCRYGG 3 cut(s) 324, 397, 1311
BstF5I GGATG 4 cut(s) 225, 426, 654, 982
BstFNI CGCG 4 cut(s) 399, 476, 488, 965
BstH2I RGCGCY 5 cut(s) 363, 426, 444, 579, 947
BstHHI GCGC 6 cut(s) 362, 425, 443, 490, 578, 946
BstKTI GATC 7 cut(s) 480, 543, 756, 776, 1264, 1364, 1485
BstMAI GTCTC 3 cut(s) 454, 832, 856
BstMBI GATC 7 cut(s) 477, 540, 753, 773, 1261, 1361, 1482
BstMWI GCNNNNNNNGC 6 cut(s) 383, 408, 482, 926, 1193, 1277
BstNI CCWGG 2 cut(s) 266, 1243
BstNSI RCATGY 1 cut(s) 1348
BstSCI CCNGG 4 cut(s) 264, 1241, 1328, 1500
BstSLI GKGCMC 1 cut(s) 938
BstUI CGCG 4 cut(s) 399, 476, 488, 965
BstV1I GCAGC 2 cut(s) 871, 1171
BstV2I GAAGAC 1 cut(s) 364
BstX2I RGATCY 1 cut(s) 1261
BstXI CCANNNNNNTGG 1 cut(s) 897
BstYI RGATCY 1 cut(s) 1261
BsuRI GGCC 8 cut(s) 5, 177, 329, 696, 1296, 1310, 1333, 1356
BtgI CCRYGG 3 cut(s) 324, 397, 1311
BtsCI GGATG 4 cut(s) 225, 426, 654, 982
BtuMI TCGCGA 1 cut(s) 476
Cac8I GCNNGC 4 cut(s) 439, 597, 1045, 1294
CfoI GCGC 6 cut(s) 362, 425, 443, 490, 578, 946
Cfr10I RCCGGY 2 cut(s) 413, 437
Cfr13I GGNCC 5 cut(s) 135, 268, 694, 805, 1331
Cfr42I CCGCGG 1 cut(s) 400
Csp6I GTAC 1 cut(s) 568
CviAII CATG 8 cut(s) 325, 529, 970, 1312, 1345, 1421, 1488, 1552
CviQI GTAC 1 cut(s) 568
DdeI CTNAG 3 cut(s) 500, 572, 853
DinI GGCGCC 3 cut(s) 361, 424, 442
DpnI GATC 7 cut(s) 479, 542, 755, 775, 1263, 1363, 1484
DpnII GATC 7 cut(s) 477, 540, 753, 773, 1261, 1361, 1482
DraIII CACNNNGTG 1 cut(s) 1491
DriI GACNNNNNGTC 1 cut(s) 1541
EaeI YGGCCR 3 cut(s) 3, 327, 1308
Eam1104I CTCTTC 5 cut(s) 71, 185, 245, 683, 764
Eam1105I GACNNNNNGTC 1 cut(s) 1541
EarI CTCTTC 5 cut(s) 71, 185, 245, 683, 764
EciI GGCGGA 5 cut(s) 292, 383, 424, 687, 725
Ecl136II GAGCTC 1 cut(s) 1411
Eco130I CCWWGG 5 cut(s) 324, 1287, 1311, 1357, 1508
Eco24I GRGCYC 2 cut(s) 1089, 1413
Eco31I GGTCTC 1 cut(s) 832
Eco32I GATATC 1 cut(s) 1149
Eco47I GGWCC 3 cut(s) 135, 268, 805
Eco47III AGCGCT 1 cut(s) 945
Eco53kI GAGCTC 1 cut(s) 1411
Eco57I CTGAAG 1 cut(s) 884
Eco88I CYCGRG 1 cut(s) 793
EcoICRI GAGCTC 1 cut(s) 1411
EcoO109I RGGNCCY 1 cut(s) 135
EcoRI GAATTC 1 cut(s) 974
EcoRII CCWGG 2 cut(s) 264, 1241
EcoRV GATATC 1 cut(s) 1149
EcoT14I CCWWGG 5 cut(s) 324, 1287, 1311, 1357, 1508
EcoT38I GRGCYC 2 cut(s) 1089, 1413
EgeI GGCGCC 3 cut(s) 361, 424, 442
EheI GGCGCC 3 cut(s) 361, 424, 442
ErhI CCWWGG 5 cut(s) 324, 1287, 1311, 1357, 1508
Esp3I CGTCTC 1 cut(s) 454
FaeI CATG 8 cut(s) 328, 532, 973, 1315, 1348, 1424, 1491, 1555
FaqI GGGAC 1 cut(s) 121
FatI CATG 8 cut(s) 324, 528, 969, 1311, 1344, 1420, 1487, 1551
FauI CCCGC 2 cut(s) 514, 804
FbaI TGATCA 1 cut(s) 1482
Fnu4HI GCNGC 9 cut(s) 330, 387, 397, 400, 486, 667, 670, 885, 1185
FokI GGATG 4 cut(s) 212, 413, 661, 969
FriOI GRGCYC 2 cut(s) 1089, 1413
Fsp4HI GCNGC 9 cut(s) 330, 387, 397, 400, 486, 667, 670, 885, 1185
FspBI CTAG 2 cut(s) 941, 1509
GlaI GCGC 6 cut(s) 361, 424, 442, 489, 577, 945
GluI GCNGC 9 cut(s) 330, 387, 397, 400, 486, 667, 670, 885, 1185
GsuI CTGGAG 3 cut(s) 1182, 1223, 1397
HaeII RGCGCY 5 cut(s) 363, 426, 444, 579, 947
HaeIII GGCC 8 cut(s) 5, 177, 329, 696, 1296, 1310, 1333, 1356
HapII CCGG 7 cut(s) 414, 438, 697, 808, 1329, 1397, 1501
HhaI GCGC 6 cut(s) 362, 425, 443, 490, 578, 946
Hin1I GRCGYC 5 cut(s) 360, 369, 423, 441, 525
Hin1II CATG 8 cut(s) 328, 532, 973, 1315, 1348, 1424, 1491, 1555
Hin6I GCGC 6 cut(s) 360, 423, 441, 488, 576, 944
HinP1I GCGC 6 cut(s) 360, 423, 441, 488, 576, 944
HinfI GANTC 3 cut(s) 906, 1497, 1536
HpaII CCGG 7 cut(s) 414, 438, 697, 808, 1329, 1397, 1501
HphI GGTGA 6 cut(s) 277, 289, 307, 328, 1384, 1492
Hpy166II GTNNAC 2 cut(s) 568, 745
Hpy188I TCNGA 4 cut(s) 758, 778, 864, 895
Hpy188III TCNNGA 4 cut(s) 475, 646, 1202, 1397
Hpy8I GTNNAC 2 cut(s) 568, 745
Hpy99I CGWCG 5 cut(s) 371, 464, 467, 476, 553
HpyAV CCTTC 9 cut(s) 31, 40, 70, 123, 165, 222, 454, 502, 721
HpyCH4III ACNGT 1 cut(s) 1234
HpyCH4IV ACGT 5 cut(s) 369, 512, 525, 551, 564
HpyCH4V TGCA 7 cut(s) 724, 960, 1058, 1187, 1304, 1439, 1494
HpyF10VI GCNNNNNNNGC 6 cut(s) 383, 408, 482, 926, 1193, 1277
HpyF3I CTNAG 3 cut(s) 500, 572, 853
HpySE526I ACGT 5 cut(s) 369, 512, 525, 551, 564
Hsp92I GRCGYC 5 cut(s) 360, 369, 423, 441, 525
Hsp92II CATG 8 cut(s) 328, 532, 973, 1315, 1348, 1424, 1491, 1555
HspAI GCGC 6 cut(s) 360, 423, 441, 488, 576, 944
KasI GGCGCC 3 cut(s) 359, 422, 440
Kpn2I TCCGGA 1 cut(s) 1396
KroI GCCGGC 1 cut(s) 437
KroNI GCCGGC 1 cut(s) 439
Ksp22I TGATCA 1 cut(s) 1482
KspI CCGCGG 1 cut(s) 400
Kzo9I GATC 7 cut(s) 477, 540, 753, 773, 1261, 1361, 1482
LmnI GCTCC 3 cut(s) 1052, 1193, 1416
Lsp1109I GCAGC 2 cut(s) 871, 1171
MaeI CTAG 2 cut(s) 941, 1509
MaeII ACGT 5 cut(s) 369, 512, 525, 551, 564
MaeIII GTNAC 3 cut(s) 283, 334, 521
MalI GATC 7 cut(s) 479, 542, 755, 775, 1263, 1363, 1484
MboI GATC 7 cut(s) 477, 540, 753, 773, 1261, 1361, 1482
MflI RGATCY 1 cut(s) 1261
MhlI GDGCHC 4 cut(s) 938, 1089, 1198, 1413
MlsI TGGCCA 2 cut(s) 5, 1310
MluCI AATT 4 cut(s) 974, 1104, 1166, 1249
MluI ACGCGT 1 cut(s) 963
MluNI TGGCCA 2 cut(s) 5, 1310
Mly113I GGCGCC 3 cut(s) 360, 423, 441
MlyI GAGTC 1 cut(s) 1530
MmeI TCCRAC 2 cut(s) 1029, 1513
Mox20I TGGCCA 2 cut(s) 5, 1310
MreI CGCCGGCG 1 cut(s) 437
MroI TCCGGA 1 cut(s) 1396
MroNI GCCGGC 1 cut(s) 437
MscI TGGCCA 2 cut(s) 5, 1310
MseI TTAA 1 cut(s) 1341
MslI CAYNNNNRTG 1 cut(s) 895
Msp20I TGGCCA 2 cut(s) 5, 1310
MspA1I CMGCKG 1 cut(s) 399
MspI CCGG 7 cut(s) 414, 438, 697, 808, 1329, 1397, 1501
MspR9I CCNGG 4 cut(s) 266, 1243, 1330, 1502
MvaI CCWGG 2 cut(s) 266, 1243
MvnI CGCG 4 cut(s) 399, 476, 488, 965
MwoI GCNNNNNNNGC 6 cut(s) 383, 408, 482, 926, 1193, 1277
NaeI GCCGGC 1 cut(s) 439
NarI GGCGCC 3 cut(s) 360, 423, 441
NciI CCSGG 2 cut(s) 1330, 1502
NcoI CCATGG 2 cut(s) 324, 1311
NdeII GATC 7 cut(s) 477, 540, 753, 773, 1261, 1361, 1482
NgoMIV GCCGGC 1 cut(s) 437
NlaIII CATG 8 cut(s) 328, 532, 973, 1315, 1348, 1424, 1491, 1555
NlaIV GGNNCC 8 cut(s) 137, 361, 424, 442, 695, 806, 846, 1506
NmeAIII GCCGAG 3 cut(s) 330, 524, 604
NmuCI GTSAC 3 cut(s) 283, 334, 521
NruI TCGCGA 1 cut(s) 476
NspI RCATGY 1 cut(s) 1348
PcsI WCGNNNNNNNCGW 3 cut(s) 363, 468, 522
PdiI GCCGGC 1 cut(s) 439
PfeI GAWTC 2 cut(s) 906, 1497
PkrI GCNGC 9 cut(s) 331, 388, 398, 401, 487, 668, 671, 886, 1186
PleI GAGTC 1 cut(s) 1530
PluTI GGCGCC 3 cut(s) 363, 426, 444
PpsI GAGTC 1 cut(s) 1530
Ppu21I YACGTR 1 cut(s) 565
PpuMI RGGWCCY 1 cut(s) 135
Psp124BI GAGCTC 1 cut(s) 1413
Psp5II RGGWCCY 1 cut(s) 135
Psp6I CCWGG 2 cut(s) 264, 1241
PspGI CCWGG 2 cut(s) 264, 1241
PspN4I GGNNCC 8 cut(s) 137, 361, 424, 442, 695, 806, 846, 1506
PspPI GGNCC 5 cut(s) 135, 268, 694, 805, 1331
PspPPI RGGWCCY 1 cut(s) 135
PsrI GAACNNNNNNTAC 2 cut(s) 828, 860
PsuI RGATCY 1 cut(s) 1261
RruI TCGCGA 1 cut(s) 476
RsaI GTAC 1 cut(s) 569
RsaNI GTAC 1 cut(s) 568
RseI CAYNNNNRTG 1 cut(s) 895
SacI GAGCTC 1 cut(s) 1413
SacII CCGCGG 1 cut(s) 400
SaqAI TTAA 1 cut(s) 1341
SatI GCNGC 9 cut(s) 330, 387, 397, 400, 486, 667, 670, 885, 1185
Sau3AI GATC 7 cut(s) 477, 540, 753, 773, 1261, 1361, 1482
Sau96I GGNCC 5 cut(s) 135, 268, 694, 805, 1331
SchI GAGTC 1 cut(s) 1530
ScrFI CCNGG 4 cut(s) 266, 1243, 1330, 1502
SduI GDGCHC 4 cut(s) 938, 1089, 1198, 1413
SfoI GGCGCC 3 cut(s) 361, 424, 442
Sfr303I CCGCGG 1 cut(s) 400
SgrAI CRCCGGYG 1 cut(s) 437
SgrBI CCGCGG 1 cut(s) 400
SinI GGWCC 3 cut(s) 135, 268, 805
SmiMI CAYNNNNRTG 1 cut(s) 895
Sse9I AATT 4 cut(s) 974, 1104, 1166, 1249
SspDI GGCGCC 3 cut(s) 359, 422, 440
SspI AATATT 1 cut(s) 925
SspMI CTAG 2 cut(s) 941, 1509
SstI GAGCTC 1 cut(s) 1413
StyD4I CCNGG 4 cut(s) 264, 1241, 1328, 1500
StyI CCWWGG 5 cut(s) 324, 1287, 1311, 1357, 1508
TaaI ACNGT 1 cut(s) 1234
TaiI ACGT 5 cut(s) 372, 515, 528, 554, 567
TasI AATT 4 cut(s) 974, 1104, 1166, 1249
TauI GCSGC 7 cut(s) 332, 389, 399, 402, 488, 669, 672
TfiI GAWTC 2 cut(s) 906, 1497
Tru1I TTAA 1 cut(s) 1341
Tru9I TTAA 1 cut(s) 1341
TseFI GTSAC 3 cut(s) 283, 334, 521
TseI GCWGC 2 cut(s) 884, 1184
Tsp45I GTSAC 3 cut(s) 283, 334, 521
TspDTI ATGAA 3 cut(s) 958, 1055, 1540
TspGWI ACGGA 1 cut(s) 509
VpaK11BI GGWCC 3 cut(s) 135, 268, 805
XapI RAATTY 3 cut(s) 974, 1104, 1249
XceI RCATGY 1 cut(s) 1348
XmaJI CCTAGG 1 cut(s) 1508
XspI CTAG 2 cut(s) 941, 1509
ZraI GACGTC 2 cut(s) 370, 526
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.