Rroxscaffold_165G00437120

Belongs to the Ca(2 ) cation antiporter (CaCA) (TC 2.A.19) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000165
OG0012048
Physical Location & Seq
Forward (+)
221094 .. 224284
3191 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_165G00437120.1

Sequence Viewer

Length: 867 bp
ATGCACAAGGGCTTTGTGGAATTGGATTGCGAGATCGGAGAAGTTGAGAAGAGATCAGAGGAGGGGAAGCCGAGTTTCGGGGTCCGGCGAGGTCTGGAAATGGTTTCAAAAGTATGGGAGGTTCCAGTCTCAATTCTTCTGCAGCTGACAATTCCACAAGCTGCCCCGTCGGAATGGAGTAGATTCTACACATCAGCCAATATTGCTCTATGCCCTCTAGCACTTCTATATTCTTGCAACTCGTTCATGGAATTCAATCATCCTGTATCTTTTCTTCTTTCCAACACCCATCTTCCACTATGGTTTGTTGTATTCTTGGCAAGCTCCTCTCTTGCACTTCTTCACTATATAATAGAGAAAGAGCCCCCCAAAACTGAGCAAATTCCTGTATTGCTTATAGCATTTGTTATGAGTGTCTTTTGGATATCCACTACTGCTGGAGAATTGTTGAACTGCCTTGCTGCACTTGGAGCACTTCTGGAGTTGCCACCAGCACTTCTTGGGCTTACGGTTCTTGCGTGGGGAAATTCTGTGGGGGATCTTGTTGCTGATGTGGCACTTGCCAAGGCAGGCCACCCTGCATTGGCCATGGCGGGGTGCTTTGCCGGGCCAATGTTTAACATGCTTGTAGGCCTTGGAACAGCGTTGGTGATACAGACCTCCAATGTTTATCCGGAAGCGTATGAGCTCCAGTTCCATGTGGGTATCGTGATTGCATTTGTGTTCTTGCTTTTGAGCCTGATGGGTTCTCTATTGGTGATCACATGGTGCAGATTCCGGGTGCCTAGATTCTGGGGGTTCTGTCTTGTTGGTCTCTATGTTATCTTCATGGCAGTTAGCTTACTGATTGCCAAGTTTTCGGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003700 GO:0003712 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006355 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006814 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008324 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009889 GO:0009987 GO:0010029 GO:0010033 GO:0010099 GO:0010228 GO:0010468 GO:0010476 GO:0010556 GO:0015075 GO:0015077 GO:0015079 GO:0015081 GO:0015318 GO:0015672 GO:0016020 GO:0019219 GO:0019222 GO:0022414 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0034220 GO:0034399 GO:0035725 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046873 GO:0048518 GO:0048571 GO:0048573 GO:0048574 GO:0048580 GO:0048582 GO:0048583 GO:0048584 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051179 GO:0051234 GO:0051239 GO:0051240 GO:0051252 GO:0051716 GO:0055085 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071804 GO:0071805 GO:0071944 GO:0080090 GO:0097305 GO:0097306 GO:0098655 GO:0098660 GO:0098662 GO:0140110 GO:1900140 GO:1901700 GO:1901701 GO:1903506 GO:2000026 GO:2000030 GO:2000112 GO:2000306 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Na_Ca_ex

Protein Analysis

288

Amino Acids

31.51

Weight (kDa)

5.67

Isoelectric Point (pI)

41.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Na_Ca_ex PF01699 131 - 281 6.2e-30 Sodium/calcium exchanger protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012048)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08960
fragaria_vesca FvH4_6g05530 FvH4_6g05530 FvH4_6g05530
malus_domestica MD04G1207600.v1.1 MD12G1221900.v1.1
prunus_persica Prupe.6G328600_v2.0.a1
pyrus_communis pycom04g18380 pycom12g20800
rosa_chinensis RchiOBHm_Chr3g0454301
rosa_laevigata RLG00000025464
rosa_multiflora Rmu_sc0001340.1_g000003
rosa_roxburghii Rroxscaffold_165G00437120
rosa_rugosa Rorug02G0654100
rosa_samantha Rh3AG058000 Rh3BG059700 Rh3CG058900 Rh3DG060200
rosa_wichuraiana Rw3G004440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 781
AccIII TCCGGA 1 cut(s) 673
AciI CCGC 1 cut(s) 593
AclWI GGATC 1 cut(s) 546
AcoI YGGCCR 1 cut(s) 585
AcsI RAATTY 3 cut(s) 251, 381, 526
AdeI CACNNNGTG 1 cut(s) 768
AfiI CCNNNNNNNGG 3 cut(s) 77, 583, 594
AgsI TTSAA 3 cut(s) 108, 256, 451
AluBI AGCT 5 cut(s) 145, 161, 324, 688, 840
AluI AGCT 5 cut(s) 145, 161, 324, 688, 840
Alw21I GWGCWC 2 cut(s) 475, 690
Alw26I GTCTC 2 cut(s) 133, 818
AlwI GGATC 1 cut(s) 546
Aor13HI TCCGGA 1 cut(s) 673
AoxI GGCC 4 cut(s) 571, 585, 608, 631
ApeKI GCWGC 3 cut(s) 142, 161, 461
ApoI RAATTY 3 cut(s) 251, 381, 526
AspS9I GGNCC 2 cut(s) 82, 608
AsuC2I CCSGG 2 cut(s) 607, 779
AsuHPI GGTGA 2 cut(s) 661, 769
AvaII GGWCC 1 cut(s) 82
BalI TGGCCA 1 cut(s) 587
BanI GGYRCC 1 cut(s) 781
BanII GRGCYC 2 cut(s) 366, 690
BarI GAAGNNNNNNTAC 2 cut(s) 258, 290
Bbv12I GWGCWC 2 cut(s) 475, 690
BbvI GCAGC 3 cut(s) 148, 154, 448
BccI CCATC 2 cut(s) 297, 736
BclI TGATCA 1 cut(s) 759
BcnI CCSGG 2 cut(s) 607, 779
BcoDI GTCTC 2 cut(s) 133, 818
BfaI CTAG 2 cut(s) 218, 786
BfmI CTRYAG 1 cut(s) 140
BisI GCNGC 3 cut(s) 143, 162, 462
BlsI GCNGC 3 cut(s) 144, 163, 463
Bme1390I CCNGG 2 cut(s) 607, 779
Bme18I GGWCC 1 cut(s) 82
BmgT120I GGNCC 2 cut(s) 82, 608
BmiI GGNNCC 3 cut(s) 83, 123, 783
BmrFI CCNGG 2 cut(s) 607, 779
BpmI CTGGAG 3 cut(s) 459, 500, 674
BpuMI CCSGG 2 cut(s) 607, 779
BsaI GGTCTC 1 cut(s) 818
BsaJI CCNNGG 3 cut(s) 564, 588, 634
BsaWI WCCGGW 1 cut(s) 673
Bsc4I CCNNNNNNNGG 3 cut(s) 77, 583, 594
Bse1I ACTGG 2 cut(s) 125, 691
BseAI TCCGGA 1 cut(s) 673
BseDI CCNNGG 3 cut(s) 564, 588, 634
BseGI GGATG 1 cut(s) 259
BseLI CCNNNNNNNGG 3 cut(s) 77, 583, 594
BseMII CTCAG 1 cut(s) 366
BseNI ACTGG 2 cut(s) 125, 691
BseRI GAGGAG 2 cut(s) 74, 316
BseXI GCAGC 3 cut(s) 148, 154, 448
BsgI GTGCAG 2 cut(s) 447, 790
BshFI GGCC 4 cut(s) 573, 587, 610, 633
BshNI GGYRCC 1 cut(s) 781
BsiHKAI GWGCWC 2 cut(s) 475, 690
BsiSI CCGG 4 cut(s) 85, 606, 674, 778
BslI CCNNNNNNNGG 3 cut(s) 77, 583, 594
BsmAI GTCTC 2 cut(s) 133, 818
BsnI GGCC 4 cut(s) 573, 587, 610, 633
Bso31I GGTCTC 1 cut(s) 818
Bsp1286I GDGCHC 3 cut(s) 366, 475, 690
Bsp13I TCCGGA 1 cut(s) 673
Bsp143I GATC 4 cut(s) 33, 53, 538, 759
Bsp19I CCATGG 1 cut(s) 588
BspACI CCGC 1 cut(s) 593
BspANI GGCC 4 cut(s) 573, 587, 610, 633
BspCNI CTCAG 1 cut(s) 367
BspEI TCCGGA 1 cut(s) 673
BspLI GGNNCC 3 cut(s) 83, 123, 783
BspMAI CTGCAG 1 cut(s) 144
BspPI GGATC 1 cut(s) 546
BspT107I GGYRCC 1 cut(s) 781
BspTNI GGTCTC 1 cut(s) 818
BsrI ACTGG 2 cut(s) 125, 691
BssECI CCNNGG 3 cut(s) 564, 588, 634
BssMI GATC 4 cut(s) 33, 53, 538, 759
BssT1I CCWWGG 3 cut(s) 564, 588, 634
Bst4CI ACNGT 1 cut(s) 511
Bst6I CTCTTC 1 cut(s) 44
BstC8I GCNNGC 2 cut(s) 322, 571
BstDEI CTNAG 1 cut(s) 375
BstDSI CCRYGG 1 cut(s) 588
BstF5I GGATG 1 cut(s) 259
BstKTI GATC 4 cut(s) 36, 56, 541, 762
BstMAI GTCTC 2 cut(s) 133, 818
BstMBI GATC 4 cut(s) 33, 53, 538, 759
BstMWI GCNNNNNNNGC 3 cut(s) 203, 470, 554
BstNSI RCATGY 1 cut(s) 625
BstSCI CCNGG 2 cut(s) 605, 777
BstSFI CTRYAG 1 cut(s) 140
BstV1I GCAGC 3 cut(s) 148, 154, 448
BstX2I RGATCY 1 cut(s) 538
BstYI RGATCY 1 cut(s) 538
BsuRI GGCC 4 cut(s) 573, 587, 610, 633
BtgI CCRYGG 1 cut(s) 588
BtsCI GGATG 1 cut(s) 259
Cac8I GCNNGC 2 cut(s) 322, 571
Cfr13I GGNCC 2 cut(s) 82, 608
CviAII CATG 6 cut(s) 247, 589, 622, 698, 765, 829
DdeI CTNAG 1 cut(s) 375
DpnI GATC 4 cut(s) 35, 55, 540, 761
DpnII GATC 4 cut(s) 33, 53, 538, 759
DraIII CACNNNGTG 1 cut(s) 768
EaeI YGGCCR 1 cut(s) 585
Eam1104I CTCTTC 1 cut(s) 44
EarI CTCTTC 1 cut(s) 44
Ecl136II GAGCTC 1 cut(s) 688
Eco130I CCWWGG 3 cut(s) 564, 588, 634
Eco147I AGGCCT 1 cut(s) 633
Eco24I GRGCYC 2 cut(s) 366, 690
Eco31I GGTCTC 1 cut(s) 818
Eco32I GATATC 1 cut(s) 426
Eco47I GGWCC 1 cut(s) 82
Eco53kI GAGCTC 1 cut(s) 688
EcoICRI GAGCTC 1 cut(s) 688
EcoRI GAATTC 1 cut(s) 251
EcoRV GATATC 1 cut(s) 426
EcoT14I CCWWGG 3 cut(s) 564, 588, 634
EcoT38I GRGCYC 2 cut(s) 366, 690
ErhI CCWWGG 3 cut(s) 564, 588, 634
FaeI CATG 6 cut(s) 250, 592, 625, 701, 768, 832
FatI CATG 6 cut(s) 246, 588, 621, 697, 764, 828
FauI CCCGC 1 cut(s) 586
FbaI TGATCA 1 cut(s) 759
Fnu4HI GCNGC 3 cut(s) 143, 162, 462
FokI GGATG 1 cut(s) 246
FriOI GRGCYC 2 cut(s) 366, 690
Fsp4HI GCNGC 3 cut(s) 143, 162, 462
FspBI CTAG 2 cut(s) 218, 786
GluI GCNGC 3 cut(s) 143, 162, 462
GsuI CTGGAG 3 cut(s) 459, 500, 674
HaeIII GGCC 4 cut(s) 573, 587, 610, 633
HapII CCGG 4 cut(s) 85, 606, 674, 778
Hin1II CATG 6 cut(s) 250, 592, 625, 701, 768, 832
HinfI GANTC 3 cut(s) 183, 774, 789
HpaII CCGG 4 cut(s) 85, 606, 674, 778
HphI GGTGA 2 cut(s) 661, 769
Hpy188I TCNGA 3 cut(s) 38, 58, 172
Hpy188III TCNNGA 4 cut(s) 95, 479, 674, 709
Hpy99I CGWCG 1 cut(s) 172
HpyCH4III ACNGT 1 cut(s) 511
HpyCH4V TGCA 8 cut(s) 4, 142, 237, 335, 464, 581, 716, 771
HpyF10VI GCNNNNNNNGC 3 cut(s) 203, 470, 554
HpyF3I CTNAG 1 cut(s) 375
Hsp92II CATG 6 cut(s) 250, 592, 625, 701, 768, 832
Kpn2I TCCGGA 1 cut(s) 673
Ksp22I TGATCA 1 cut(s) 759
Kzo9I GATC 4 cut(s) 33, 53, 538, 759
LmnI GCTCC 3 cut(s) 329, 470, 693
Lsp1109I GCAGC 3 cut(s) 148, 154, 448
MaeI CTAG 2 cut(s) 218, 786
MalI GATC 4 cut(s) 35, 55, 540, 761
MboI GATC 4 cut(s) 33, 53, 538, 759
MboII GAAGA 6 cut(s) 61, 128, 266, 284, 332, 817
MflI RGATCY 1 cut(s) 538
MhlI GDGCHC 3 cut(s) 366, 475, 690
MlsI TGGCCA 1 cut(s) 587
MluCI AATT 7 cut(s) 20, 132, 150, 251, 381, 443, 526
MluNI TGGCCA 1 cut(s) 587
MmeI TCCRAC 2 cut(s) 150, 306
MnlI CCTC 7 cut(s) 52, 55, 83, 112, 225, 337, 670
Mox20I TGGCCA 1 cut(s) 587
MroI TCCGGA 1 cut(s) 673
MscI TGGCCA 1 cut(s) 587
MseI TTAA 1 cut(s) 618
Msp20I TGGCCA 1 cut(s) 587
MspA1I CMGCKG 1 cut(s) 145
MspI CCGG 4 cut(s) 85, 606, 674, 778
MspR9I CCNGG 2 cut(s) 607, 779
MwoI GCNNNNNNNGC 3 cut(s) 203, 470, 554
NciI CCSGG 2 cut(s) 607, 779
NcoI CCATGG 1 cut(s) 588
NdeII GATC 4 cut(s) 33, 53, 538, 759
NlaIII CATG 6 cut(s) 250, 592, 625, 701, 768, 832
NlaIV GGNNCC 3 cut(s) 83, 123, 783
NmeAIII GCCGAG 1 cut(s) 96
NspI RCATGY 1 cut(s) 625
PceI AGGCCT 1 cut(s) 633
PcsI WCGNNNNNNNCGW 1 cut(s) 515
PfeI GAWTC 3 cut(s) 183, 774, 789
PkrI GCNGC 3 cut(s) 144, 163, 463
Psp124BI GAGCTC 1 cut(s) 690
PspN4I GGNNCC 3 cut(s) 83, 123, 783
PspPI GGNCC 2 cut(s) 82, 608
PsrI GAACNNNNNNTAC 2 cut(s) 105, 137
PstI CTGCAG 1 cut(s) 144
PsuI RGATCY 1 cut(s) 538
PvuII CAGCTG 1 cut(s) 145
SacI GAGCTC 1 cut(s) 690
SaqAI TTAA 1 cut(s) 618
SatI GCNGC 3 cut(s) 143, 162, 462
Sau3AI GATC 4 cut(s) 33, 53, 538, 759
Sau96I GGNCC 2 cut(s) 82, 608
ScrFI CCNGG 2 cut(s) 607, 779
SduI GDGCHC 3 cut(s) 366, 475, 690
SetI ASST 8 cut(s) 94, 123, 147, 163, 326, 662, 690, 842
SfcI CTRYAG 1 cut(s) 140
SinI GGWCC 1 cut(s) 82
Sse9I AATT 7 cut(s) 20, 132, 150, 251, 381, 443, 526
SseBI AGGCCT 1 cut(s) 633
SsiI CCGC 1 cut(s) 593
SspI AATATT 1 cut(s) 202
SspMI CTAG 2 cut(s) 218, 786
SstI GAGCTC 1 cut(s) 690
StuI AGGCCT 1 cut(s) 633
StyD4I CCNGG 2 cut(s) 605, 777
StyI CCWWGG 3 cut(s) 564, 588, 634
TaaI ACNGT 1 cut(s) 511
TasI AATT 7 cut(s) 20, 132, 150, 251, 381, 443, 526
TfiI GAWTC 3 cut(s) 183, 774, 789
Tru1I TTAA 1 cut(s) 618
Tru9I TTAA 1 cut(s) 618
TseI GCWGC 3 cut(s) 142, 161, 461
TspDTI ATGAA 2 cut(s) 235, 817
VpaK11BI GGWCC 1 cut(s) 82
XapI RAATTY 3 cut(s) 251, 381, 526
XceI RCATGY 1 cut(s) 625
XspI CTAG 2 cut(s) 218, 786
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.