Rw3G004440

Belongs to the Ca(2 ) cation antiporter (CaCA) (TC 2.A.19) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0012048
Physical Location & Seq
Forward (+)
3878100 .. 3881266
3167 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G004440.1

Sequence Viewer

Length: 1614 bp
ATGGCCATCCTCTCTTCCTTTGAAACCTTCACTCTCTCCCTAACACTCCTCTCCATCTTCCTCTTCTTCCTCCTCCTCACTCCCCCAACTTCCACTTCCCCAAACTACCCCTCCCCTTTCCCCCTAACCCCCCACAGGTCCCTCCTCCAAACCCCCTCCTCCTGCTCCCCCTCCAATGGCCTCTTCAACTACCTCTGCCTCTTCCCCCAAAACCCTAGCCTCTCTCTCTCCTCCCTCTCTCTCATCCTCCTCCTTCTCTTCTACCTCCTCATCAAAACCGCCCAGGATCACTTCTCCCTCGTCACCACCAAGCTCACCTTCGCCCTCAACCTGACGCCCTCCATGGCCGCCGTCACCCTCCTCGCCCTCGGCAACGGCGCCCCCGACGTCTTCGCCTCCCTCGCCGCCGTCCGCCGCGGCAACTACCGCACCGGCTTCGGCGCCATCCTCTCCGCCGGCACCTTCGTCTCCGCCTTCGTCGTCGGCTTCGTCGCGATCCACGCCGCGCCCTTCTCCCTCACCCCGGCCACGTTCGTCAGGGACGTCATGTTCTACCTGATCTCGGCCACGTTTCTGTTCTACGTGTATCTGAGCGCCGAGATTTATCTGTGGCAGGCGGTGGGGTTCGTCGGGTTTTACTTGTTCTTTGTGGGGTTTGTGTTCTGGATGGACTTGGGGTTGGGCGGAGGAGGAGGAGGAGGAGGGAAGAGGAGCCGGTGTGAGGTGGCGATGGGTGTGGAGAGTGAAATGCACAAGAGCTTTGTGGAATTGGATTGCGAGATCGGAGAAGTTGAGAAGAGATCAGAGGAGGGGAAGCCGAGTTTCGGGGTCCGGCGAGGTCTGGAAATGGTCTCAAAAGTATGGGAGGTTCCAGTCTCGATTCTTCTGAAGCTAACAATTCCACAGGCTGCCCCGTCGGAATGGAGTAGATTCTACACATCAGCCAATATTGCTCTATGCCCTCTAGCACTTCTATATTCTTGCAACTCGTTCATGGAATTCAATCATCCTGTAGCTTTTCTTCTTTCCAACACCCATCTTCCACTATGGTTTGTTGTATTCTTGGCAAGCTCCTCTCTTGCACTTCTTCATTATATAATAGAGAAAGAGCCCCCCAAAACTGAGCAAATTCCTGTATTGCTTATAGCATTTGTTATGAGTGTCTTTTGGATATCCACTACTGCTGGAGAATTGTTGAACTGCCTTGCTGCACTTGGAGCACTTCTGGAGTTGCCACCAGCACTTCTTGGGCTTACGGTTCTTGCCTGGGGAAATTCTGTGGGGGATCTTGTTGCTGATGTGGCACTTGCCAAGGCAGGCCACCCTGCATTGGCCATGGCGGGGTGCTTTGCCGGGCCAATGTTTAACATGCTTGTAGGCCTTGGAACAGCATTGGTGATACAGACCTCCAATGTTTATCCGGAAGCGTATGAGCTCCAGTTCCATGTGGGTATCGTGATTGCATTTGTGTTCTTGCTTTTGAGCCTGATGGGTTCTCTATTGGTGATCACATGGTGCAGATTCCGGGTGCCTAGGTTCTGGGGGTTCTGTCTTGTTGGTCTCTATGTTATCTTCATGGCAGTTAGCTTACTGATTGCCAAGTTTTCCGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003700 GO:0003712 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006355 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006814 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008324 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009889 GO:0009987 GO:0010029 GO:0010033 GO:0010099 GO:0010228 GO:0010468 GO:0010476 GO:0010556 GO:0015075 GO:0015077 GO:0015079 GO:0015081 GO:0015318 GO:0015672 GO:0016020 GO:0019219 GO:0019222 GO:0022414 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0034220 GO:0034399 GO:0035725 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046873 GO:0048518 GO:0048571 GO:0048573 GO:0048574 GO:0048580 GO:0048582 GO:0048583 GO:0048584 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051179 GO:0051234 GO:0051239 GO:0051240 GO:0051252 GO:0051716 GO:0055085 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071804 GO:0071805 GO:0071944 GO:0080090 GO:0097305 GO:0097306 GO:0098655 GO:0098660 GO:0098662 GO:0140110 GO:1900140 GO:1901700 GO:1901701 GO:1903506 GO:2000026 GO:2000030 GO:2000112 GO:2000306 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Na_Ca_ex

Protein Analysis

537

Amino Acids

58.38

Weight (kDa)

6.31

Isoelectric Point (pI)

45.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Na_Ca_ex PF01699 80 - 222 1.7e-19 Sodium/calcium exchanger protein
Na_Ca_ex PF01699 380 - 530 2.5e-29 Sodium/calcium exchanger protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012048)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08960
fragaria_vesca FvH4_6g05530 FvH4_6g05530 FvH4_6g05530
malus_domestica MD04G1207600.v1.1 MD12G1221900.v1.1
prunus_persica Prupe.6G328600_v2.0.a1
pyrus_communis pycom04g18380 pycom12g20800
rosa_chinensis RchiOBHm_Chr3g0454301
rosa_laevigata RLG00000025464
rosa_multiflora Rmu_sc0001340.1_g000003
rosa_roxburghii Rroxscaffold_165G00437120
rosa_rugosa Rorug02G0654100
rosa_samantha Rh3AG058000 Rh3BG059700 Rh3CG058900 Rh3DG060200
rosa_wichuraiana Rw3G004440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 390, 546
AccB1I GGYRCC 4 cut(s) 377, 440, 458, 1528
AccII CGCG 3 cut(s) 417, 494, 506
AccIII TCCGGA 1 cut(s) 1420
AclWI GGATC 3 cut(s) 294, 490, 1293
AcoI YGGCCR 5 cut(s) 3, 345, 525, 564, 1332
AcsI RAATTY 3 cut(s) 998, 1128, 1273
AcuI CTGAAG 1 cut(s) 908
AcyI GRCGYC 5 cut(s) 335, 378, 387, 441, 543
AdeI CACNNNGTG 1 cut(s) 1515
AfiI CCNNNNNNNGG 8 cut(s) 135, 176, 523, 562, 721, 824, 1330, 1341
AflIII ACRYGT 1 cut(s) 582
AgsI TTSAA 4 cut(s) 23, 187, 1003, 1198
AjnI CCWGG 2 cut(s) 282, 1265
AjuI GAANNNNNNNTTGG 6 cut(s) 79, 111, 167, 199, 302, 334
AloI GAACNNNNNNTCC 2 cut(s) 533, 565
AluBI AGCT 7 cut(s) 313, 759, 892, 1016, 1071, 1435, 1587
AluI AGCT 7 cut(s) 313, 759, 892, 1016, 1071, 1435, 1587
Alw21I GWGCWC 2 cut(s) 1222, 1437
Alw26I GTCTC 4 cut(s) 472, 856, 880, 1565
AlwI GGATC 3 cut(s) 294, 490, 1293
Aor13HI TCCGGA 1 cut(s) 1420
AoxI GGCC 9 cut(s) 3, 178, 345, 525, 564, 1318, 1332, 1355, 1378
ApeKI GCWGC 2 cut(s) 908, 1208
ApoI RAATTY 3 cut(s) 998, 1128, 1273
AspA2I CCTAGG 1 cut(s) 1532
AspLEI GCGC 4 cut(s) 380, 443, 508, 596
AspS9I GGNCC 3 cut(s) 138, 829, 1355
AsuC2I CCSGG 4 cut(s) 524, 1354, 1526, 1609
AsuHPI GGTGA 6 cut(s) 295, 307, 346, 511, 1408, 1516
AvaII GGWCC 2 cut(s) 138, 829
AvrII CCTAGG 1 cut(s) 1532
BalI TGGCCA 2 cut(s) 5, 1334
BanI GGYRCC 4 cut(s) 377, 440, 458, 1528
BanII GRGCYC 2 cut(s) 1113, 1437
BarI GAAGNNNNNNTAC 2 cut(s) 1005, 1037
BbsI GAAGAC 1 cut(s) 382
Bbv12I GWGCWC 2 cut(s) 1222, 1437
BbvI GCAGC 2 cut(s) 895, 1195
BccI CCATC 7 cut(s) 14, 62, 452, 661, 724, 1044, 1483
BceAI ACGGC 3 cut(s) 335, 391, 392
BcgI CGANNNNNNTGC 2 cut(s) 418, 452
BciT130I CCWGG 2 cut(s) 284, 1267
BclI TGATCA 1 cut(s) 1506
BcnI CCSGG 4 cut(s) 524, 1354, 1526, 1609
BcoDI GTCTC 4 cut(s) 472, 856, 880, 1565
BfaI CTAG 3 cut(s) 216, 965, 1533
BfmI CTRYAG 1 cut(s) 1011
BfoI RGCGCY 3 cut(s) 381, 444, 597
BisI GCNGC 7 cut(s) 348, 405, 415, 418, 504, 909, 1209
BlnI CCTAGG 1 cut(s) 1532
BlsI GCNGC 7 cut(s) 349, 406, 416, 419, 505, 910, 1210
Bme1390I CCNGG 6 cut(s) 284, 524, 1267, 1354, 1526, 1609
Bme18I GGWCC 2 cut(s) 138, 829
BmgT120I GGNCC 3 cut(s) 138, 829, 1355
BmiI GGNNCC 8 cut(s) 140, 379, 442, 460, 713, 830, 870, 1530
BmrFI CCNGG 6 cut(s) 284, 524, 1267, 1354, 1526, 1609
BpiI GAAGAC 1 cut(s) 382
BpmI CTGGAG 3 cut(s) 1206, 1247, 1421
BpuMI CCSGG 4 cut(s) 524, 1354, 1526, 1609
BsaAI YACGTR 1 cut(s) 583
BsaHI GRCGYC 5 cut(s) 335, 378, 387, 441, 543
BsaI GGTCTC 2 cut(s) 856, 1565
BsaWI WCCGGW 1 cut(s) 1420
BsaXI ACNNNNNCTCC 4 cut(s) 95, 125, 703, 733
Bsc4I CCNNNNNNNGG 8 cut(s) 135, 176, 523, 562, 721, 824, 1330, 1341
Bse118I RCCGGY 3 cut(s) 431, 455, 714
Bse1I ACTGG 2 cut(s) 872, 1438
BseAI TCCGGA 1 cut(s) 1420
BseBI CCWGG 2 cut(s) 284, 1267
BseGI GGATG 5 cut(s) 6, 243, 444, 672, 1006
BseLI CCNNNNNNNGG 8 cut(s) 135, 176, 523, 562, 721, 824, 1330, 1341
BseMII CTCAG 2 cut(s) 581, 1113
BseNI ACTGG 2 cut(s) 872, 1438
BseXI GCAGC 2 cut(s) 895, 1195
BsgI GTGCAG 2 cut(s) 1194, 1537
Bsh1236I CGCG 3 cut(s) 417, 494, 506
BshFI GGCC 9 cut(s) 5, 180, 347, 527, 566, 1320, 1334, 1357, 1380
BshNI GGYRCC 4 cut(s) 377, 440, 458, 1528
BsiHKAI GWGCWC 2 cut(s) 1222, 1437
BsiSI CCGG 9 cut(s) 432, 456, 524, 715, 832, 1353, 1421, 1525, 1608
BslFI GGGAC 2 cut(s) 124, 554
BslI CCNNNNNNNGG 8 cut(s) 135, 176, 523, 562, 721, 824, 1330, 1341
BsmAI GTCTC 4 cut(s) 472, 856, 880, 1565
BsmBI CGTCTC 1 cut(s) 472
BsmFI GGGAC 2 cut(s) 124, 554
BsnI GGCC 9 cut(s) 5, 180, 347, 527, 566, 1320, 1334, 1357, 1380
Bso31I GGTCTC 2 cut(s) 856, 1565
Bsp1286I GDGCHC 3 cut(s) 1113, 1222, 1437
Bsp13I TCCGGA 1 cut(s) 1420
Bsp143I GATC 7 cut(s) 286, 495, 558, 780, 800, 1285, 1506
Bsp19I CCATGG 2 cut(s) 342, 1335
Bsp68I TCGCGA 1 cut(s) 494
BspANI GGCC 9 cut(s) 5, 180, 347, 527, 566, 1320, 1334, 1357, 1380
BspCNI CTCAG 2 cut(s) 582, 1114
BspEI TCCGGA 1 cut(s) 1420
BspFNI CGCG 3 cut(s) 417, 494, 506
BspLI GGNNCC 8 cut(s) 140, 379, 442, 460, 713, 830, 870, 1530
BspPI GGATC 3 cut(s) 294, 490, 1293
BspT107I GGYRCC 4 cut(s) 377, 440, 458, 1528
BspTNI GGTCTC 2 cut(s) 856, 1565
BsrFI RCCGGY 3 cut(s) 431, 455, 714
BsrI ACTGG 2 cut(s) 872, 1438
BssAI RCCGGY 3 cut(s) 431, 455, 714
BssMI GATC 7 cut(s) 286, 495, 558, 780, 800, 1285, 1506
BssNI GRCGYC 5 cut(s) 335, 378, 387, 441, 543
BssT1I CCWWGG 5 cut(s) 342, 1311, 1335, 1381, 1532
Bst2UI CCWGG 2 cut(s) 284, 1267
Bst4CI ACNGT 1 cut(s) 1258
Bst6I CTCTTC 7 cut(s) 19, 68, 188, 206, 263, 701, 791
BstACI GRCGYC 5 cut(s) 335, 378, 387, 441, 543
BstBAI YACGTR 1 cut(s) 583
BstC8I GCNNGC 4 cut(s) 457, 615, 1069, 1318
BstDEI CTNAG 2 cut(s) 590, 1122
BstDSI CCRYGG 3 cut(s) 342, 415, 1335
BstF5I GGATG 5 cut(s) 6, 243, 444, 672, 1006
BstFNI CGCG 3 cut(s) 417, 494, 506
BstH2I RGCGCY 3 cut(s) 381, 444, 597
BstHHI GCGC 4 cut(s) 380, 443, 508, 596
BstKTI GATC 7 cut(s) 289, 498, 561, 783, 803, 1288, 1509
BstMAI GTCTC 4 cut(s) 472, 856, 880, 1565
BstMBI GATC 7 cut(s) 286, 495, 558, 780, 800, 1285, 1506
BstMWI GCNNNNNNNGC 6 cut(s) 401, 426, 500, 950, 1217, 1301
BstNI CCWGG 2 cut(s) 284, 1267
BstNSI RCATGY 1 cut(s) 1372
BstSCI CCNGG 6 cut(s) 282, 522, 1265, 1352, 1524, 1607
BstSFI CTRYAG 1 cut(s) 1011
BstUI CGCG 3 cut(s) 417, 494, 506
BstV1I GCAGC 2 cut(s) 895, 1195
BstV2I GAAGAC 1 cut(s) 382
BstX2I RGATCY 1 cut(s) 1285
BstYI RGATCY 1 cut(s) 1285
BsuRI GGCC 9 cut(s) 5, 180, 347, 527, 566, 1320, 1334, 1357, 1380
BtgI CCRYGG 3 cut(s) 342, 415, 1335
BtgZI GCGATG 1 cut(s) 743
BtsCI GGATG 5 cut(s) 6, 243, 444, 672, 1006
BtuMI TCGCGA 1 cut(s) 494
Cac8I GCNNGC 4 cut(s) 457, 615, 1069, 1318
CfoI GCGC 4 cut(s) 380, 443, 508, 596
Cfr10I RCCGGY 3 cut(s) 431, 455, 714
Cfr13I GGNCC 3 cut(s) 138, 829, 1355
Cfr42I CCGCGG 1 cut(s) 418
CseI GACGC 1 cut(s) 343
CviAII CATG 8 cut(s) 343, 547, 994, 1336, 1369, 1445, 1512, 1576
DdeI CTNAG 2 cut(s) 590, 1122
DinI GGCGCC 2 cut(s) 379, 442
DpnI GATC 7 cut(s) 288, 497, 560, 782, 802, 1287, 1508
DpnII GATC 7 cut(s) 286, 495, 558, 780, 800, 1285, 1506
DraIII CACNNNGTG 1 cut(s) 1515
EaeI YGGCCR 5 cut(s) 3, 345, 525, 564, 1332
Eam1104I CTCTTC 7 cut(s) 19, 68, 188, 206, 263, 701, 791
EarI CTCTTC 7 cut(s) 19, 68, 188, 206, 263, 701, 791
EciI GGCGGA 4 cut(s) 401, 442, 460, 699
Ecl136II GAGCTC 1 cut(s) 1435
Eco130I CCWWGG 5 cut(s) 342, 1311, 1335, 1381, 1532
Eco147I AGGCCT 1 cut(s) 1380
Eco24I GRGCYC 2 cut(s) 1113, 1437
Eco31I GGTCTC 2 cut(s) 856, 1565
Eco32I GATATC 1 cut(s) 1173
Eco47I GGWCC 2 cut(s) 138, 829
Eco53kI GAGCTC 1 cut(s) 1435
Eco57I CTGAAG 1 cut(s) 908
EcoICRI GAGCTC 1 cut(s) 1435
EcoO109I RGGNCCY 1 cut(s) 138
EcoRI GAATTC 1 cut(s) 998
EcoRII CCWGG 2 cut(s) 282, 1265
EcoRV GATATC 1 cut(s) 1173
EcoT14I CCWWGG 5 cut(s) 342, 1311, 1335, 1381, 1532
EcoT38I GRGCYC 2 cut(s) 1113, 1437
EgeI GGCGCC 2 cut(s) 379, 442
EheI GGCGCC 2 cut(s) 379, 442
ErhI CCWWGG 5 cut(s) 342, 1311, 1335, 1381, 1532
Esp3I CGTCTC 1 cut(s) 472
FaeI CATG 8 cut(s) 346, 550, 997, 1339, 1372, 1448, 1515, 1579
FalI AAGNNNNNCTT 2 cut(s) 302, 334
FaqI GGGAC 2 cut(s) 124, 554
FatI CATG 8 cut(s) 342, 546, 993, 1335, 1368, 1444, 1511, 1575
FauI CCCGC 1 cut(s) 1333
FbaI TGATCA 1 cut(s) 1506
Fnu4HI GCNGC 7 cut(s) 348, 405, 415, 418, 504, 909, 1209
FokI GGATG 4 cut(s) 230, 431, 679, 993
FriOI GRGCYC 2 cut(s) 1113, 1437
Fsp4HI GCNGC 7 cut(s) 348, 405, 415, 418, 504, 909, 1209
FspBI CTAG 3 cut(s) 216, 965, 1533
GlaI GCGC 4 cut(s) 379, 442, 507, 595
GluI GCNGC 7 cut(s) 348, 405, 415, 418, 504, 909, 1209
GsuI CTGGAG 3 cut(s) 1206, 1247, 1421
HaeII RGCGCY 3 cut(s) 381, 444, 597
HaeIII GGCC 9 cut(s) 5, 180, 347, 527, 566, 1320, 1334, 1357, 1380
HapII CCGG 9 cut(s) 432, 456, 524, 715, 832, 1353, 1421, 1525, 1608
HgaI GACGC 1 cut(s) 343
HhaI GCGC 4 cut(s) 380, 443, 508, 596
Hin1I GRCGYC 5 cut(s) 335, 378, 387, 441, 543
Hin1II CATG 8 cut(s) 346, 550, 997, 1339, 1372, 1448, 1515, 1579
Hin6I GCGC 4 cut(s) 378, 441, 506, 594
HinP1I GCGC 4 cut(s) 378, 441, 506, 594
HinfI GANTC 3 cut(s) 880, 930, 1521
HpaII CCGG 9 cut(s) 432, 456, 524, 715, 832, 1353, 1421, 1525, 1608
HphI GGTGA 6 cut(s) 295, 307, 346, 511, 1408, 1516
Hpy188I TCNGA 5 cut(s) 591, 785, 805, 888, 919
Hpy188III TCNNGA 7 cut(s) 493, 664, 842, 877, 1226, 1421, 1456
Hpy99I CGWCG 6 cut(s) 389, 482, 485, 494, 632, 919
HpyAV CCTTC 6 cut(s) 37, 263, 328, 472, 484, 520
HpyCH4III ACNGT 1 cut(s) 1258
HpyCH4IV ACGT 5 cut(s) 387, 530, 543, 569, 582
HpyCH4V TGCA 7 cut(s) 751, 984, 1082, 1211, 1328, 1463, 1518
HpyF10VI GCNNNNNNNGC 6 cut(s) 401, 426, 500, 950, 1217, 1301
HpyF3I CTNAG 2 cut(s) 590, 1122
HpySE526I ACGT 5 cut(s) 387, 530, 543, 569, 582
Hsp92I GRCGYC 5 cut(s) 335, 378, 387, 441, 543
Hsp92II CATG 8 cut(s) 346, 550, 997, 1339, 1372, 1448, 1515, 1579
HspAI GCGC 4 cut(s) 378, 441, 506, 594
KasI GGCGCC 2 cut(s) 377, 440
Kpn2I TCCGGA 1 cut(s) 1420
KroI GCCGGC 1 cut(s) 455
KroNI GCCGGC 1 cut(s) 457
Ksp22I TGATCA 1 cut(s) 1506
KspI CCGCGG 1 cut(s) 418
Kzo9I GATC 7 cut(s) 286, 495, 558, 780, 800, 1285, 1506
LmnI GCTCC 5 cut(s) 170, 711, 1076, 1217, 1440
Lsp1109I GCAGC 2 cut(s) 895, 1195
MaeI CTAG 3 cut(s) 216, 965, 1533
MaeII ACGT 5 cut(s) 387, 530, 543, 569, 582
MaeIII GTNAC 2 cut(s) 301, 352
MalI GATC 7 cut(s) 288, 497, 560, 782, 802, 1287, 1508
MboI GATC 7 cut(s) 286, 495, 558, 780, 800, 1285, 1506
MflI RGATCY 1 cut(s) 1285
MhlI GDGCHC 3 cut(s) 1113, 1222, 1437
MlsI TGGCCA 2 cut(s) 5, 1334
MluCI AATT 6 cut(s) 767, 897, 998, 1128, 1190, 1273
MluNI TGGCCA 2 cut(s) 5, 1334
Mly113I GGCGCC 2 cut(s) 378, 441
MmeI TCCRAC 2 cut(s) 897, 1053
Mox20I TGGCCA 2 cut(s) 5, 1334
MroI TCCGGA 1 cut(s) 1420
MroNI GCCGGC 1 cut(s) 455
MscI TGGCCA 2 cut(s) 5, 1334
MseI TTAA 1 cut(s) 1365
Msp20I TGGCCA 2 cut(s) 5, 1334
MspA1I CMGCKG 1 cut(s) 417
MspI CCGG 9 cut(s) 432, 456, 524, 715, 832, 1353, 1421, 1525, 1608
MspR9I CCNGG 6 cut(s) 284, 524, 1267, 1354, 1526, 1609
MvaI CCWGG 2 cut(s) 284, 1267
MvnI CGCG 3 cut(s) 417, 494, 506
MwoI GCNNNNNNNGC 6 cut(s) 401, 426, 500, 950, 1217, 1301
NaeI GCCGGC 1 cut(s) 457
NarI GGCGCC 2 cut(s) 378, 441
NciI CCSGG 4 cut(s) 524, 1354, 1526, 1609
NcoI CCATGG 2 cut(s) 342, 1335
NdeII GATC 7 cut(s) 286, 495, 558, 780, 800, 1285, 1506
NgoMIV GCCGGC 1 cut(s) 455
NlaIII CATG 8 cut(s) 346, 550, 997, 1339, 1372, 1448, 1515, 1579
NlaIV GGNNCC 8 cut(s) 140, 379, 442, 460, 713, 830, 870, 1530
NmeAIII GCCGAG 4 cut(s) 348, 542, 622, 843
NmuCI GTSAC 2 cut(s) 301, 352
NruI TCGCGA 1 cut(s) 494
NspI RCATGY 1 cut(s) 1372
PceI AGGCCT 1 cut(s) 1380
PcsI WCGNNNNNNNCGW 3 cut(s) 381, 486, 540
PdiI GCCGGC 1 cut(s) 457
PfeI GAWTC 3 cut(s) 880, 930, 1521
PkrI GCNGC 7 cut(s) 349, 406, 416, 419, 505, 910, 1210
PluTI GGCGCC 2 cut(s) 381, 444
Ppu21I YACGTR 1 cut(s) 583
PpuMI RGGWCCY 1 cut(s) 138
Psp124BI GAGCTC 1 cut(s) 1437
Psp5II RGGWCCY 1 cut(s) 138
Psp6I CCWGG 2 cut(s) 282, 1265
PspGI CCWGG 2 cut(s) 282, 1265
PspN4I GGNNCC 8 cut(s) 140, 379, 442, 460, 713, 830, 870, 1530
PspPI GGNCC 3 cut(s) 138, 829, 1355
PspPPI RGGWCCY 1 cut(s) 138
PsrI GAACNNNNNNTAC 2 cut(s) 852, 884
PsuI RGATCY 1 cut(s) 1285
RruI TCGCGA 1 cut(s) 494
SacI GAGCTC 1 cut(s) 1437
SacII CCGCGG 1 cut(s) 418
SaqAI TTAA 1 cut(s) 1365
SatI GCNGC 7 cut(s) 348, 405, 415, 418, 504, 909, 1209
Sau3AI GATC 7 cut(s) 286, 495, 558, 780, 800, 1285, 1506
Sau96I GGNCC 3 cut(s) 138, 829, 1355
ScrFI CCNGG 6 cut(s) 284, 524, 1267, 1354, 1526, 1609
SduI GDGCHC 3 cut(s) 1113, 1222, 1437
SfcI CTRYAG 1 cut(s) 1011
SfoI GGCGCC 2 cut(s) 379, 442
Sfr303I CCGCGG 1 cut(s) 418
SgrBI CCGCGG 1 cut(s) 418
SinI GGWCC 2 cut(s) 138, 829
Sse9I AATT 6 cut(s) 767, 897, 998, 1128, 1190, 1273
SseBI AGGCCT 1 cut(s) 1380
SspDI GGCGCC 2 cut(s) 377, 440
SspI AATATT 1 cut(s) 949
SspMI CTAG 3 cut(s) 216, 965, 1533
SstI GAGCTC 1 cut(s) 1437
StuI AGGCCT 1 cut(s) 1380
StyD4I CCNGG 6 cut(s) 282, 522, 1265, 1352, 1524, 1607
StyI CCWWGG 5 cut(s) 342, 1311, 1335, 1381, 1532
TaaI ACNGT 1 cut(s) 1258
TaiI ACGT 5 cut(s) 390, 533, 546, 572, 585
TaqI TCGA 1 cut(s) 878
TasI AATT 6 cut(s) 767, 897, 998, 1128, 1190, 1273
TauI GCSGC 5 cut(s) 350, 407, 417, 420, 506
TfiI GAWTC 3 cut(s) 880, 930, 1521
Tru1I TTAA 1 cut(s) 1365
Tru9I TTAA 1 cut(s) 1365
TseFI GTSAC 2 cut(s) 301, 352
TseI GCWGC 2 cut(s) 908, 1208
Tsp45I GTSAC 2 cut(s) 301, 352
TspDTI ATGAA 3 cut(s) 982, 1079, 1564
VpaK11BI GGWCC 2 cut(s) 138, 829
XapI RAATTY 3 cut(s) 998, 1128, 1273
XceI RCATGY 1 cut(s) 1372
XmaJI CCTAGG 1 cut(s) 1532
XspI CTAG 3 cut(s) 216, 965, 1533
ZraI GACGTC 2 cut(s) 388, 544
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.