AT1G10380

Wall-associated receptor kinase C-terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0012438
Physical Location & Seq
Forward (+)
3400554 .. 3402420
1867 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G10380.1

Sequence Viewer

Length: 918 bp
ATGAGTTTGAAGCGTTCTTCTTCTTCTTTCTTTATCTTTCTCTTTTCCTTCTTCTTCCTCTCTTCTCATGTCTCCTCACAAGCCTGCCAAAAAACATGCGGCCAAATACCCATCAAGTACCCGCTCGGAACCGGGTCAGGTTGCGGTGACCCACGTTTCACACGTTACATCACGTGTGACCCTGACCAACAGACTTTGACGCTCACCACCCACACAGGCAGTTACCCTATCACTTCTGTCGACTACGCCAAACAAGAGATCTACGTCACTGATCCGTCCATGTCTACGTGTGCATGTACCCGACCCAGCCATGGATTCGGGTTGGATTGGGACGCTCCGTTTTCTTTCCATGACGACACCGTTTTTACGCTCCTTGACTGTTCCGTAGACGAATCCCCTGTATTCACACCGTTAAGTAACGGTAGCGGACGTGTTTCCCTCTGTGATCGTCAAAGCTCCTCCATTTGCACCTTCTTGTACTCAAATTGCAGGGCCATAAGCCTCATAAACCTCCAAGTATCAACGTGTTGCGTCTACGTGCCTCTAGACCTCGGACCATCGTTCGAAATGGATTTGAACAAACTCAAGTGCTCGTCATACTCCGGCTTCTACAACCTCGGTCCAGGCCAAGAATCCCACCCGGAGAATTGGAACTACGGAATCGCACTCAAGTACAAGTTCAACGTTTTTGATGAGTACCCTGGCGTCTGCGGTAGCTGCGAGCGTAGTAACGGTGCTTGTGGCTTCAACACACAGTCAAGCTCGTTCGTTTGTAACTGTCCCGGTGGGATTAACACGACATCGGATTGCTTCTTCCTTTATAACTCTGCTTCTATTCTTGTTCCTTGGTTCTCAAGAGAATGGGTAATGTACCCTTTGTCATGGTTTGTTGTTTGGATGGTGATGGTTCTGCGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GUB_WAK_bind WAK_assoc

Protein Analysis

305

Amino Acids

33.95

Weight (kDa)

5.29

Isoelectric Point (pI)

48.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GUB_WAK_bind PF13947 29 - 91 3.3e-11 Wall-associated receptor kinase galacturonan-binding
WAK_assoc PF14380 212 - 262 4.9e-08 Wall-associated receptor kinase C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012438)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10380 AT1G10380
fragaria_vesca FvH4_4g35530
malus_domestica MD13G1082400.v1.1 MD16G1081500.v1.1
prunus_persica Prupe.3G121800_v2.0.a1 Prupe.3G121800_v2.0.a1
pyrus_communis pycom13g07100 pycom16g07030
rosa_chinensis RchiOBHm_Chr4g0445181
rosa_laevigata RLG00000005760
rosa_multiflora Rmu_sc0000050.1_g000037
rosa_roxburghii Rroxscaffold_5G00385690
rosa_rugosa Rorug04G0359700
rosa_samantha Rh4AG420500 Rh4BG432400 Rh4CG447000 Rh4DG428500
rosa_wichuraiana Rw4G036060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 822
AccBSI CCGCTC 1 cut(s) 124
AccI GTMKAC 4 cut(s) 240, 284, 387, 534
AciI CCGC 5 cut(s) 99, 122, 144, 426, 711
AclI AACGTT 1 cut(s) 684
AclWI GGATC 1 cut(s) 266
AcoI YGGCCR 1 cut(s) 100
AcvI CACGTG 1 cut(s) 174
AcyI GRCGYC 1 cut(s) 705
AfaI GTAC 6 cut(s) 119, 298, 479, 674, 698, 872
AfiI CCNNNNNNNGG 1 cut(s) 311
AflIII ACRYGT 5 cut(s) 161, 173, 287, 430, 524
AgsI TTSAA 4 cut(s) 10, 577, 682, 748
AjiI CACGTC 1 cut(s) 431
AjnI CCWGG 2 cut(s) 622, 700
AluBI AGCT 3 cut(s) 456, 717, 762
AluI AGCT 3 cut(s) 456, 717, 762
Alw21I GWGCWC 1 cut(s) 593
Alw26I GTCTC 1 cut(s) 76
AlwI GGATC 1 cut(s) 266
AoxI GGCC 3 cut(s) 100, 492, 625
ApeKI GCWGC 1 cut(s) 717
AspS9I GGNCC 3 cut(s) 492, 554, 620
AsuC2I CCSGG 3 cut(s) 133, 641, 783
AsuHPI GGTGA 3 cut(s) 158, 196, 913
AsuII TTCGAA 1 cut(s) 564
AvaII GGWCC 2 cut(s) 554, 620
BbrPI CACGTG 1 cut(s) 174
Bbv12I GWGCWC 1 cut(s) 593
BbvI GCAGC 1 cut(s) 704
BccI CCATC 4 cut(s) 119, 565, 892, 898
BciT130I CCWGG 2 cut(s) 624, 702
BcnI CCSGG 3 cut(s) 133, 641, 783
BcoDI GTCTC 1 cut(s) 76
BfaI CTAG 1 cut(s) 545
BglII AGATCT 1 cut(s) 258
BisI GCNGC 2 cut(s) 100, 718
BlsI GCNGC 2 cut(s) 101, 719
Bme1390I CCNGG 5 cut(s) 133, 624, 641, 702, 783
Bme18I GGWCC 2 cut(s) 554, 620
BmgBI CACGTC 1 cut(s) 431
BmgT120I GGNCC 3 cut(s) 492, 554, 620
BmiI GGNNCC 1 cut(s) 130
BmrFI CCNGG 5 cut(s) 133, 624, 641, 702, 783
Bpu14I TTCGAA 1 cut(s) 564
BpuEI CTTGAG 3 cut(s) 569, 653, 838
BpuMI CCSGG 3 cut(s) 133, 641, 783
BsaAI YACGTR 3 cut(s) 174, 288, 538
BsaHI GRCGYC 1 cut(s) 705
BsaJI CCNNGG 5 cut(s) 310, 550, 616, 700, 845
Bsc4I CCNNNNNNNGG 1 cut(s) 311
BseBI CCWGG 2 cut(s) 624, 702
BseDI CCNNGG 5 cut(s) 310, 550, 616, 700, 845
BseGI GGATG 1 cut(s) 903
BseLI CCNNNNNNNGG 1 cut(s) 311
BseRI GAGGAG 2 cut(s) 64, 448
BseXI GCAGC 1 cut(s) 704
BseYI CCCAGC 1 cut(s) 305
BshFI GGCC 3 cut(s) 102, 494, 627
BsiHKAI GWGCWC 1 cut(s) 593
BsiSI CCGG 4 cut(s) 132, 603, 641, 783
BslFI GGGAC 2 cut(s) 344, 765
BslI CCNNNNNNNGG 1 cut(s) 311
BsmAI GTCTC 1 cut(s) 76
BsmFI GGGAC 2 cut(s) 344, 765
BsnI GGCC 3 cut(s) 102, 494, 627
Bsp119I TTCGAA 1 cut(s) 564
Bsp1286I GDGCHC 1 cut(s) 593
Bsp143I GATC 3 cut(s) 258, 271, 445
Bsp19I CCATGG 1 cut(s) 310
BspACI CCGC 5 cut(s) 99, 122, 144, 426, 711
BspANI GGCC 3 cut(s) 102, 494, 627
BspLI GGNNCC 1 cut(s) 130
BspPI GGATC 1 cut(s) 266
BspT104I TTCGAA 1 cut(s) 564
BsrBI CCGCTC 1 cut(s) 124
BssECI CCNNGG 5 cut(s) 310, 550, 616, 700, 845
BssMI GATC 3 cut(s) 258, 271, 445
BssNI GRCGYC 1 cut(s) 705
BssT1I CCWWGG 2 cut(s) 310, 845
Bst2UI CCWGG 2 cut(s) 624, 702
Bst4CI ACNGT 7 cut(s) 361, 380, 411, 422, 734, 756, 779
Bst6I CTCTTC 1 cut(s) 67
BstACI GRCGYC 1 cut(s) 705
BstBAI YACGTR 3 cut(s) 174, 288, 538
BstBI TTCGAA 1 cut(s) 564
BstC8I GCNNGC 2 cut(s) 85, 722
BstDSI CCRYGG 1 cut(s) 310
BstEII GGTNACC 1 cut(s) 146
BstF5I GGATG 1 cut(s) 903
BstKTI GATC 3 cut(s) 261, 274, 448
BstMAI GTCTC 1 cut(s) 76
BstMBI GATC 3 cut(s) 258, 271, 445
BstMWI GCNNNNNNNGC 1 cut(s) 717
BstNI CCWGG 2 cut(s) 624, 702
BstNSI RCATGY 2 cut(s) 99, 297
BstPI GGTNACC 1 cut(s) 146
BstSCI CCNGG 5 cut(s) 131, 622, 639, 700, 781
BstV1I GCAGC 1 cut(s) 704
BstX2I RGATCY 1 cut(s) 258
BstYI RGATCY 1 cut(s) 258
BsuRI GGCC 3 cut(s) 102, 494, 627
BtgI CCRYGG 1 cut(s) 310
BtrI CACGTC 1 cut(s) 431
BtsCI GGATG 1 cut(s) 903
BtsIMutI CAGTG 1 cut(s) 267
Cac8I GCNNGC 2 cut(s) 85, 722
Cfr13I GGNCC 3 cut(s) 492, 554, 620
CseI GACGC 4 cut(s) 208, 341, 520, 694
Csp6I GTAC 6 cut(s) 118, 297, 478, 673, 697, 871
CviAII CATG 7 cut(s) 68, 96, 280, 294, 311, 350, 882
CviQI GTAC 6 cut(s) 118, 297, 478, 673, 697, 871
DpnI GATC 3 cut(s) 260, 273, 447
DpnII GATC 3 cut(s) 258, 271, 445
EaeI YGGCCR 1 cut(s) 100
Eam1104I CTCTTC 1 cut(s) 67
EarI CTCTTC 1 cut(s) 67
Eco130I CCWWGG 2 cut(s) 310, 845
Eco47I GGWCC 2 cut(s) 554, 620
Eco72I CACGTG 1 cut(s) 174
Eco91I GGTNACC 1 cut(s) 146
EcoO65I GGTNACC 1 cut(s) 146
EcoRII CCWGG 2 cut(s) 622, 700
EcoT14I CCWWGG 2 cut(s) 310, 845
ErhI CCWWGG 2 cut(s) 310, 845
FaeI CATG 7 cut(s) 71, 99, 283, 297, 314, 353, 885
FaqI GGGAC 2 cut(s) 344, 765
FatI CATG 7 cut(s) 67, 95, 279, 293, 310, 349, 881
FauI CCCGC 1 cut(s) 129
FblI GTMKAC 4 cut(s) 240, 284, 387, 534
Fnu4HI GCNGC 2 cut(s) 100, 718
FokI GGATG 1 cut(s) 910
Fsp4HI GCNGC 2 cut(s) 100, 718
FspBI CTAG 1 cut(s) 545
GluI GCNGC 2 cut(s) 100, 718
GsaI CCCAGC 1 cut(s) 309
HaeIII GGCC 3 cut(s) 102, 494, 627
HapII CCGG 4 cut(s) 132, 603, 641, 783
HgaI GACGC 4 cut(s) 208, 341, 520, 694
Hin1I GRCGYC 1 cut(s) 705
Hin1II CATG 7 cut(s) 71, 99, 283, 297, 314, 353, 885
HincII GTYRAC 1 cut(s) 241
HindII GTYRAC 1 cut(s) 241
HinfI GANTC 4 cut(s) 315, 392, 632, 660
HpaII CCGG 4 cut(s) 132, 603, 641, 783
HphI GGTGA 3 cut(s) 158, 196, 913
Hpy166II GTNNAC 4 cut(s) 241, 285, 388, 535
Hpy188I TCNGA 3 cut(s) 128, 554, 805
Hpy188III TCNNGA 2 cut(s) 545, 855
Hpy8I GTNNAC 4 cut(s) 241, 285, 388, 535
HpyAV CCTTC 2 cut(s) 58, 481
HpyCH4III ACNGT 7 cut(s) 361, 380, 411, 422, 734, 756, 779
HpyCH4IV ACGT 9 cut(s) 154, 163, 173, 264, 287, 430, 524, 537, 684
HpyCH4V TGCA 3 cut(s) 293, 468, 489
HpyF10VI GCNNNNNNNGC 1 cut(s) 717
HpySE526I ACGT 9 cut(s) 154, 163, 173, 264, 287, 430, 524, 537, 684
Hsp92I GRCGYC 1 cut(s) 705
Hsp92II CATG 7 cut(s) 71, 99, 283, 297, 314, 353, 885
Kzo9I GATC 3 cut(s) 258, 271, 445
LmnI GCTCC 3 cut(s) 340, 375, 461
Lsp1109I GCAGC 1 cut(s) 704
MaeI CTAG 1 cut(s) 545
MaeII ACGT 9 cut(s) 154, 163, 173, 264, 287, 430, 524, 537, 684
MaeIII GTNAC 8 cut(s) 146, 164, 176, 221, 265, 416, 728, 773
MalI GATC 3 cut(s) 260, 273, 447
MbiI CCGCTC 1 cut(s) 124
MboI GATC 3 cut(s) 258, 271, 445
MboII GAAGA 7 cut(s) 9, 12, 15, 43, 46, 54, 805
MflI RGATCY 1 cut(s) 258
MhlI GDGCHC 1 cut(s) 593
MluCI AATT 2 cut(s) 484, 646
MmeI TCCRAC 1 cut(s) 303
MnlI CCTC 9 cut(s) 68, 85, 449, 469, 512, 521, 552, 560, 626
MseI TTAA 3 cut(s) 413, 792, 916
MspI CCGG 4 cut(s) 132, 603, 641, 783
MspR9I CCNGG 5 cut(s) 133, 624, 641, 702, 783
MvaI CCWGG 2 cut(s) 624, 702
MwoI GCNNNNNNNGC 1 cut(s) 717
NciI CCSGG 3 cut(s) 133, 641, 783
NcoI CCATGG 1 cut(s) 310
NdeII GATC 3 cut(s) 258, 271, 445
NlaIII CATG 7 cut(s) 71, 99, 283, 297, 314, 353, 885
NlaIV GGNNCC 1 cut(s) 130
NmuCI GTSAC 3 cut(s) 146, 176, 265
NspI RCATGY 2 cut(s) 99, 297
NspV TTCGAA 1 cut(s) 564
PcsI WCGNNNNNNNCGW 1 cut(s) 160
PfeI GAWTC 4 cut(s) 315, 392, 632, 660
PkrI GCNGC 2 cut(s) 101, 719
PmaCI CACGTG 1 cut(s) 174
PmlI CACGTG 1 cut(s) 174
Ppu21I YACGTR 3 cut(s) 174, 288, 538
PsiI TTATAA 1 cut(s) 822
Psp1406I AACGTT 1 cut(s) 684
Psp6I CCWGG 2 cut(s) 622, 700
PspCI CACGTG 1 cut(s) 174
PspEI GGTNACC 1 cut(s) 146
PspFI CCCAGC 1 cut(s) 305
PspGI CCWGG 2 cut(s) 622, 700
PspN4I GGNNCC 1 cut(s) 130
PspPI GGNCC 3 cut(s) 492, 554, 620
PsuI RGATCY 1 cut(s) 258
RsaI GTAC 6 cut(s) 119, 298, 479, 674, 698, 872
RsaNI GTAC 6 cut(s) 118, 297, 478, 673, 697, 871
SalI GTCGAC 1 cut(s) 239
SaqAI TTAA 3 cut(s) 413, 792, 916
SatI GCNGC 2 cut(s) 100, 718
Sau3AI GATC 3 cut(s) 258, 271, 445
Sau96I GGNCC 3 cut(s) 492, 554, 620
ScrFI CCNGG 5 cut(s) 133, 624, 641, 702, 783
SduI GDGCHC 1 cut(s) 593
SfuI TTCGAA 1 cut(s) 564
SinI GGWCC 2 cut(s) 554, 620
SmlI CTYRAG 3 cut(s) 584, 668, 853
SmoI CTYRAG 3 cut(s) 584, 668, 853
Sse9I AATT 2 cut(s) 484, 646
SsiI CCGC 5 cut(s) 99, 122, 144, 426, 711
SspMI CTAG 1 cut(s) 545
StyD4I CCNGG 5 cut(s) 131, 622, 639, 700, 781
StyI CCWWGG 2 cut(s) 310, 845
TaaI ACNGT 7 cut(s) 361, 380, 411, 422, 734, 756, 779
TaiI ACGT 9 cut(s) 157, 166, 176, 267, 290, 433, 527, 540, 687
TaqI TCGA 2 cut(s) 240, 564
TaqII GACCGA 1 cut(s) 608
TasI AATT 2 cut(s) 484, 646
TatI WGTACW 2 cut(s) 477, 672
TauI GCSGC 1 cut(s) 102
TfiI GAWTC 4 cut(s) 315, 392, 632, 660
Tru1I TTAA 3 cut(s) 413, 792, 916
Tru9I TTAA 3 cut(s) 413, 792, 916
TscAI CASTG 1 cut(s) 274
TseFI GTSAC 3 cut(s) 146, 176, 265
TseI GCWGC 1 cut(s) 717
Tsp45I GTSAC 3 cut(s) 146, 176, 265
TspGWI ACGGA 4 cut(s) 264, 327, 373, 672
TspRI CASTG 1 cut(s) 274
VpaK11BI GGWCC 2 cut(s) 554, 620
XbaI TCTAGA 1 cut(s) 544
XceI RCATGY 2 cut(s) 99, 297
XmiI GTMKAC 4 cut(s) 240, 284, 387, 534
XspI CTAG 1 cut(s) 545
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.