Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0004232

Physical Location & Seq

Genomic Coordinates Forward (+)

53213371 .. 53215212

Gene Structure 1842 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0359700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGGAACTGATAGACAGTCTCTGTGAGTTGGAGAGTCTCGGCGCCAATCATCATCATGGAATCATGGCTCTCTCCACTGACAGCTTTACTCATCATCATCATCATGATCAGCAACAACCTCAAGTCCCTGCAGCTATGAATTTCAGCACTGATCATAGTCATGATATTCAGAGATTTTCTCATTCTCATGATCGAAATGATGATGATGATCATCATCATCATGTCCTACTTGCTCAATCAACAGCTGCAGATTTTGGAGAACAAAGCCAAATGGAAAAGCCATTGGGAGGAAGAAAGAGAAAGAGAAACAATACTGATAAAGATATGGACAAACCAAAAGAGGTCATTCATGTGAGAGCTAAGCGAGGCCAAGCTACTGATAGCCACAGTTTGGCAGAAAGGGTGAGAAGAGAAAAAATAAATGAAAGGCTGAGATGCCTGCAAAATCTTGTTCCAGGGTGCTATAAGACAATGGGAATGGCAGTAATGCTGGATGTGGTTATCAGTTACGTTCAGTCACTGCAGAATCAAATTGAGTTTCTCTCTATGAAGCTTTCTGCTGCAAGCGTGTATTATGATTTCAATTCACCAGGTCATGCAGATCCTGTTGACACAACGCAGGGGACAAATGCATATGAGGTACAAGAGAATATTATGGTAAGATCAGAGCAAGGGTATGGAGGAGGAGGAGGACTTTCTTTTAGCCAATCAACATCGTGGCCTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GUB_WAK_bind WAK_assoc

Protein Analysis

242

Amino Acids

27.25

Weight (kDa)

6.06

Isoelectric Point (pI)

45.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004232)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g35540 FvH4_6g05810
prunus_persica	Prupe.1G068500_v2.0.a1 Prupe.2G308100_v2.0.a1
pyrus_communis	pycom01g22690 pycom05g13400
rosa_laevigata	RLG00000005759 RLG00000025421
rosa_multiflora	Rmu_co8287015.1_g000001 Rmu_sc0000050.1_g000036 Rmu_sc0001792.1_g000022 Rmu_sc0003140.1_g000017
rosa_roxburghii	Rroxscaffold_5G00385700 Rroxscaffold_6G00424820
rosa_rugosa	Rorug03G0001600 Rorug03G0001900 Rorug03G0001900 Rorug04G0359700
rosa_samantha	Rh3AG061500 Rh3AG061900 Rh3BG063300 Rh3BG063700 Rh3CG062200 Rh3CG062600 Rh3DG063200 Rh3DG063300 Rh3DG063400 Rh4AG420600 Rh4BG432500 Rh4CG447100 Rh4DG428600
rosa_wichuraiana	Rw3G004810 Rw4G036070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	41
AccB7I	CCANNNNNTGG	1 cut(s)	391
AclWI	GGATC	1 cut(s)	596
AcsI	RAATTY	1 cut(s)	139
AcyI	GRCGYC	1 cut(s)	42
AfaI	GTAC	1 cut(s)	642
AfiI	CCNNNNNNNGG	2 cut(s)	287, 391
AgsI	TTSAA	1 cut(s)	583
AjnI	CCWGG	2 cut(s)	454, 589
AluBI	AGCT	6 cut(s)	84, 134, 245, 359, 374, 553
AluI	AGCT	6 cut(s)	84, 134, 245, 359, 374, 553
Alw26I	GTCTC	2 cut(s)	23, 41
AlwI	GGATC	1 cut(s)	596
AlwNI	CAGNNNCTG	3 cut(s)	21, 520, 605
AoxI	GGCC	2 cut(s)	367, 719
ApeKI	GCWGC	3 cut(s)	131, 245, 560
ApoI	RAATTY	1 cut(s)	139
AspLEI	GCGC	1 cut(s)	44
AsuHPI	GGTGA	2 cut(s)	415, 579
BanI	GGYRCC	1 cut(s)	41
BbvI	GCAGC	3 cut(s)	143, 232, 547
BciT130I	CCWGG	2 cut(s)	456, 591
BclI	TGATCA	3 cut(s)	106, 151, 208
BcoDI	GTCTC	2 cut(s)	23, 41
BfmI	CTRYAG	3 cut(s)	129, 246, 521
BfoI	RGCGCY	1 cut(s)	45
BisI	GCNGC	3 cut(s)	132, 246, 561
BlpI	GCTNAGC	1 cut(s)	360
BlsI	GCNGC	3 cut(s)	133, 247, 562
Bme1390I	CCNGG	2 cut(s)	456, 591
BmiI	GGNNCC	1 cut(s)	43
BmrFI	CCNGG	2 cut(s)	456, 591
BmsI	GCATC	1 cut(s)	425
BplI	GAGNNNNNCTC	4 cut(s)	163, 195, 527, 559
Bpu1102I	GCTNAGC	1 cut(s)	360
BpuEI	CTTGAG	1 cut(s)	105
BsaBI	GATNNNNATC	3 cut(s)	207, 210, 213
BsaHI	GRCGYC	1 cut(s)	42
BsaJI	CCNNGG	1 cut(s)	455
Bsc4I	CCNNNNNNNGG	2 cut(s)	287, 391
Bse8I	GATNNNNATC	3 cut(s)	207, 210, 213
BseBI	CCWGG	2 cut(s)	456, 591
BseDI	CCNNGG	1 cut(s)	455
BseGI	GGATG	1 cut(s)	499
BseJI	GATNNNNATC	3 cut(s)	207, 210, 213
BseLI	CCNNNNNNNGG	2 cut(s)	287, 391
BseMII	CTCAG	1 cut(s)	422
BseRI	GAGGAG	3 cut(s)	696, 699, 702
BseXI	GCAGC	3 cut(s)	143, 232, 547
BshFI	GGCC	2 cut(s)	369, 721
BshNI	GGYRCC	1 cut(s)	41
BslFI	GGGAC	2 cut(s)	110, 637
BslI	CCNNNNNNNGG	2 cut(s)	287, 391
BsmAI	GTCTC	2 cut(s)	23, 41
BsmFI	GGGAC	2 cut(s)	110, 637
BsnI	GGCC	2 cut(s)	369, 721
Bsp143I	GATC	6 cut(s)	106, 151, 190, 208, 601, 662
Bsp1720I	GCTNAGC	1 cut(s)	360
BspANI	GGCC	2 cut(s)	369, 721
BspCNI	CTCAG	1 cut(s)	423
BspHI	TCATGA	3 cut(s)	103, 160, 187
BspLI	GGNNCC	1 cut(s)	43
BspMAI	CTGCAG	3 cut(s)	133, 250, 525
BspPI	GGATC	1 cut(s)	596
BspT107I	GGYRCC	1 cut(s)	41
BssECI	CCNNGG	1 cut(s)	455
BssMI	GATC	6 cut(s)	106, 151, 190, 208, 601, 662
BssNI	GRCGYC	1 cut(s)	42
Bst2UI	CCWGG	2 cut(s)	456, 591
Bst4CI	ACNGT	2 cut(s)	17, 389
Bst6I	CTCTTC	1 cut(s)	403
BstACI	GRCGYC	1 cut(s)	42
BstC8I	GCNNGC	2 cut(s)	440, 565
BstDEI	CTNAG	2 cut(s)	360, 431
BstF5I	GGATG	1 cut(s)	499
BstH2I	RGCGCY	1 cut(s)	45
BstHHI	GCGC	1 cut(s)	44
BstKTI	GATC	6 cut(s)	109, 154, 193, 211, 604, 665
BstMAI	GTCTC	2 cut(s)	23, 41
BstMBI	GATC	6 cut(s)	106, 151, 190, 208, 601, 662
BstNI	CCWGG	2 cut(s)	456, 591
BstSCI	CCNGG	2 cut(s)	454, 589
BstSFI	CTRYAG	3 cut(s)	129, 246, 521
BstV1I	GCAGC	3 cut(s)	143, 232, 547
BstX2I	RGATCY	1 cut(s)	601
BstYI	RGATCY	1 cut(s)	601
BsuRI	GGCC	2 cut(s)	369, 721
BtsCI	GGATG	1 cut(s)	499
BtsI	GCAGTG	1 cut(s)	518
BtsIMutI	CAGTG	3 cut(s)	75, 147, 518
Cac8I	GCNNGC	2 cut(s)	440, 565
CaiI	CAGNNNCTG	3 cut(s)	21, 520, 605
CciI	TCATGA	3 cut(s)	103, 160, 187
CfoI	GCGC	1 cut(s)	44
CsiI	ACCWGGT	1 cut(s)	589
Csp6I	GTAC	1 cut(s)	641
CviAII	CATG	8 cut(s)	56, 64, 104, 161, 188, 221, 350, 596
CviQI	GTAC	1 cut(s)	641
DdeI	CTNAG	2 cut(s)	360, 431
DinI	GGCGCC	1 cut(s)	43
DpnI	GATC	6 cut(s)	108, 153, 192, 210, 603, 664
DpnII	GATC	6 cut(s)	106, 151, 190, 208, 601, 662
Eam1104I	CTCTTC	1 cut(s)	403
EarI	CTCTTC	1 cut(s)	403
EcoRII	CCWGG	2 cut(s)	454, 589
EcoT22I	ATGCAT	1 cut(s)	634
EgeI	GGCGCC	1 cut(s)	43
EheI	GGCGCC	1 cut(s)	43
FaeI	CATG	8 cut(s)	59, 67, 107, 164, 191, 224, 353, 599
FaqI	GGGAC	2 cut(s)	110, 637
FatI	CATG	8 cut(s)	55, 63, 103, 160, 187, 220, 349, 595
FauNDI	CATATG	1 cut(s)	634
FbaI	TGATCA	3 cut(s)	106, 151, 208
Fnu4HI	GCNGC	3 cut(s)	132, 246, 561
FokI	GGATG	1 cut(s)	506
Fsp4HI	GCNGC	3 cut(s)	132, 246, 561
GlaI	GCGC	1 cut(s)	43
GluI	GCNGC	3 cut(s)	132, 246, 561
HaeII	RGCGCY	1 cut(s)	45
HaeIII	GGCC	2 cut(s)	369, 721
HhaI	GCGC	1 cut(s)	44
Hin1I	GRCGYC	1 cut(s)	42
Hin1II	CATG	8 cut(s)	59, 67, 107, 164, 191, 224, 353, 599
Hin6I	GCGC	1 cut(s)	42
HinP1I	GCGC	1 cut(s)	42
HincII	GTYRAC	1 cut(s)	610
HindII	GTYRAC	1 cut(s)	610
HindIII	AAGCTT	1 cut(s)	551
HinfI	GANTC	3 cut(s)	34, 60, 526
HphI	GGTGA	2 cut(s)	415, 579
Hpy166II	GTNNAC	1 cut(s)	610
Hpy188I	TCNGA	2 cut(s)	171, 667
Hpy188III	TCNNGA	3 cut(s)	104, 161, 188
Hpy8I	GTNNAC	1 cut(s)	610
HpyCH4III	ACNGT	2 cut(s)	17, 389
HpyCH4IV	ACGT	1 cut(s)	510
HpyCH4V	TGCA	7 cut(s)	131, 248, 442, 523, 563, 599, 632
HpyF3I	CTNAG	2 cut(s)	360, 431
HpySE526I	ACGT	1 cut(s)	510
Hsp92I	GRCGYC	1 cut(s)	42
Hsp92II	CATG	8 cut(s)	59, 67, 107, 164, 191, 224, 353, 599
HspAI	GCGC	1 cut(s)	42
KasI	GGCGCC	1 cut(s)	41
Ksp22I	TGATCA	3 cut(s)	106, 151, 208
Kzo9I	GATC	6 cut(s)	106, 151, 190, 208, 601, 662
LpnPI	CCDG	9 cut(s)	141, 441, 452, 468, 476, 576, 603, 605, 618
Lsp1109I	GCAGC	3 cut(s)	143, 232, 547
LweI	GCATC	1 cut(s)	425
MabI	ACCWGGT	1 cut(s)	589
MaeII	ACGT	1 cut(s)	510
MaeIII	GTNAC	2 cut(s)	506, 516
MalI	GATC	6 cut(s)	108, 153, 192, 210, 603, 664
MboI	GATC	6 cut(s)	106, 151, 190, 208, 601, 662
MboII	GAAGA	2 cut(s)	303, 420
MflI	RGATCY	1 cut(s)	601
MluCI	AATT	3 cut(s)	139, 531, 583
Mly113I	GGCGCC	1 cut(s)	42
MlyI	GAGTC	1 cut(s)	43
MmeI	TCCRAC	1 cut(s)	9
MnlI	CCTC	9 cut(s)	129, 281, 334, 359, 631, 674, 677, 680, 683
Mph1103I	ATGCAT	1 cut(s)	634
MslI	CAYNNNNRTG	6 cut(s)	54, 102, 159, 186, 219, 350
MspA1I	CMGCKG	1 cut(s)	245
MspR9I	CCNGG	2 cut(s)	456, 591
MvaI	CCWGG	2 cut(s)	456, 591
NarI	GGCGCC	1 cut(s)	42
NdeI	CATATG	1 cut(s)	634
NdeII	GATC	6 cut(s)	106, 151, 190, 208, 601, 662
NlaIII	CATG	8 cut(s)	59, 67, 107, 164, 191, 224, 353, 599
NlaIV	GGNNCC	1 cut(s)	43
NmeAIII	GCCGAG	1 cut(s)	18
NmuCI	GTSAC	1 cut(s)	516
NsiI	ATGCAT	1 cut(s)	634
PagI	TCATGA	3 cut(s)	103, 160, 187
PfeI	GAWTC	2 cut(s)	60, 526
PflMI	CCANNNNNTGG	1 cut(s)	391
PkrI	GCNGC	3 cut(s)	133, 247, 562
PleI	GAGTC	1 cut(s)	42
PluTI	GGCGCC	1 cut(s)	45
PpsI	GAGTC	1 cut(s)	42
Psp6I	CCWGG	2 cut(s)	454, 589
PspGI	CCWGG	2 cut(s)	454, 589
PspN4I	GGNNCC	1 cut(s)	43
PstI	CTGCAG	3 cut(s)	133, 250, 525
PstNI	CAGNNNCTG	3 cut(s)	21, 520, 605
PsuI	RGATCY	1 cut(s)	601
PvuII	CAGCTG	1 cut(s)	245
RsaI	GTAC	1 cut(s)	642
RsaNI	GTAC	1 cut(s)	641
RseI	CAYNNNNRTG	6 cut(s)	54, 102, 159, 186, 219, 350
SatI	GCNGC	3 cut(s)	132, 246, 561
Sau3AI	GATC	6 cut(s)	106, 151, 190, 208, 601, 662
SchI	GAGTC	1 cut(s)	43
ScrFI	CCNGG	2 cut(s)	456, 591
SexAI	ACCWGGT	1 cut(s)	589
SfaNI	GCATC	1 cut(s)	425
SfcI	CTRYAG	3 cut(s)	129, 246, 521
SfoI	GGCGCC	1 cut(s)	43
SmiMI	CAYNNNNRTG	6 cut(s)	54, 102, 159, 186, 219, 350
SmlI	CTYRAG	1 cut(s)	120
SmoI	CTYRAG	1 cut(s)	120
Sse9I	AATT	3 cut(s)	139, 531, 583
SspDI	GGCGCC	1 cut(s)	41
SspI	AATATT	1 cut(s)	652
StyD4I	CCNGG	2 cut(s)	454, 589
TaaI	ACNGT	2 cut(s)	17, 389
TaiI	ACGT	1 cut(s)	513
TaqI	TCGA	1 cut(s)	193
TasI	AATT	3 cut(s)	139, 531, 583
TfiI	GAWTC	2 cut(s)	60, 526
TscAI	CASTG	3 cut(s)	82, 154, 525
TseFI	GTSAC	1 cut(s)	516
TseI	GCWGC	3 cut(s)	131, 245, 560
Tsp45I	GTSAC	1 cut(s)	516
TspDTI	ATGAA	4 cut(s)	152, 338, 438, 563
TspRI	CASTG	3 cut(s)	82, 154, 525
Van91I	CCANNNNNTGG	1 cut(s)	391
XapI	RAATTY	1 cut(s)	139
Zsp2I	ATGCAT	1 cut(s)	634

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.