No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_4g35540 FvH4_6g05810 |
| prunus_persica | Prupe.1G068500_v2.0.a1 Prupe.2G308100_v2.0.a1 |
| pyrus_communis | pycom01g22690 pycom05g13400 |
| rosa_laevigata | RLG00000005759 RLG00000025421 |
| rosa_multiflora | Rmu_co8287015.1_g000001 Rmu_sc0000050.1_g000036 Rmu_sc0001792.1_g000022 Rmu_sc0003140.1_g000017 |
| rosa_roxburghii | Rroxscaffold_5G00385700 Rroxscaffold_6G00424820 |
| rosa_rugosa | Rorug03G0001600 Rorug03G0001900 Rorug03G0001900 Rorug04G0359700 |
| rosa_samantha | Rh3AG061500 Rh3AG061900 Rh3BG063300 Rh3BG063700 Rh3CG062200 Rh3CG062600 Rh3DG063200 Rh3DG063300 Rh3DG063400 Rh4AG420600 Rh4BG432500 Rh4CG447100 Rh4DG428600 |
| rosa_wichuraiana | Rw3G004810 Rw4G036070 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 248 |
| AcsI | RAATTY | 1 cut(s) | 127 |
| AfaI | GTAC | 1 cut(s) | 111 |
| AgsI | TTSAA | 3 cut(s) | 33, 133, 260 |
| AluBI | AGCT | 3 cut(s) | 119, 145, 332 |
| AluI | AGCT | 3 cut(s) | 119, 145, 332 |
| ApoI | RAATTY | 1 cut(s) | 127 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 119, 151 |
| BbsI | GAAGAC | 2 cut(s) | 157, 375 |
| BfaI | CTAG | 1 cut(s) | 194 |
| BglII | AGATCT | 1 cut(s) | 176 |
| BmsI | GCATC | 1 cut(s) | 31 |
| BpiI | GAAGAC | 2 cut(s) | 157, 375 |
| BpmI | CTGGAG | 1 cut(s) | 66 |
| BpuEI | CTTGAG | 1 cut(s) | 212 |
| BsaJI | CCNNGG | 1 cut(s) | 397 |
| BseDI | CCNNGG | 1 cut(s) | 397 |
| BseGI | GGATG | 3 cut(s) | 94, 370, 393 |
| BseMII | CTCAG | 1 cut(s) | 194 |
| BseYI | CCCAGC | 1 cut(s) | 145 |
| BsiSI | CCGG | 1 cut(s) | 101 |
| Bsp1407I | TGTACA | 1 cut(s) | 109 |
| Bsp143I | GATC | 1 cut(s) | 176 |
| BspACI | CCGC | 1 cut(s) | 248 |
| BspCNI | CTCAG | 1 cut(s) | 193 |
| BsrGI | TGTACA | 1 cut(s) | 109 |
| BssECI | CCNNGG | 1 cut(s) | 397 |
| BssMI | GATC | 1 cut(s) | 176 |
| BssT1I | CCWWGG | 1 cut(s) | 397 |
| Bst4CI | ACNGT | 1 cut(s) | 405 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 11 |
| BstAUI | TGTACA | 1 cut(s) | 109 |
| BstC8I | GCNNGC | 1 cut(s) | 246 |
| BstDEI | CTNAG | 1 cut(s) | 180 |
| BstF5I | GGATG | 3 cut(s) | 94, 370, 393 |
| BstKTI | GATC | 1 cut(s) | 179 |
| BstMBI | GATC | 1 cut(s) | 176 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 11 |
| BstV2I | GAAGAC | 2 cut(s) | 157, 375 |
| BstX2I | RGATCY | 1 cut(s) | 176 |
| BstYI | RGATCY | 1 cut(s) | 176 |
| BtsCI | GGATG | 3 cut(s) | 94, 370, 393 |
| Cac8I | GCNNGC | 1 cut(s) | 246 |
| Csp6I | GTAC | 1 cut(s) | 110 |
| CviAII | CATG | 1 cut(s) | 17 |
| CviJI | RGCY | 4 cut(s) | 104, 119, 145, 332 |
| CviKI_1 | RGCY | 4 cut(s) | 104, 119, 145, 332 |
| CviQI | GTAC | 1 cut(s) | 110 |
| DdeI | CTNAG | 1 cut(s) | 180 |
| DpnI | GATC | 1 cut(s) | 178 |
| DpnII | GATC | 1 cut(s) | 176 |
| EciI | GGCGGA | 1 cut(s) | 263 |
| Eco130I | CCWWGG | 1 cut(s) | 397 |
| EcoT14I | CCWWGG | 1 cut(s) | 397 |
| ErhI | CCWWGG | 1 cut(s) | 397 |
| FaeI | CATG | 1 cut(s) | 20 |
| FaiI | YATR | 2 cut(s) | 18, 65 |
| FatI | CATG | 1 cut(s) | 16 |
| FokI | GGATG | 3 cut(s) | 101, 377, 380 |
| FspBI | CTAG | 1 cut(s) | 194 |
| GsaI | CCCAGC | 1 cut(s) | 149 |
| GsuI | CTGGAG | 1 cut(s) | 66 |
| HapII | CCGG | 1 cut(s) | 101 |
| Hin1II | CATG | 1 cut(s) | 20 |
| HincII | GTYRAC | 1 cut(s) | 379 |
| HindII | GTYRAC | 1 cut(s) | 379 |
| HinfI | GANTC | 3 cut(s) | 29, 77, 353 |
| HpaII | CCGG | 1 cut(s) | 101 |
| Hpy166II | GTNNAC | 1 cut(s) | 379 |
| Hpy188I | TCNGA | 6 cut(s) | 76, 139, 162, 183, 304, 358 |
| Hpy188III | TCNNGA | 3 cut(s) | 174, 229, 269 |
| Hpy8I | GTNNAC | 1 cut(s) | 379 |
| HpyAV | CCTTC | 1 cut(s) | 266 |
| HpyCH4III | ACNGT | 1 cut(s) | 405 |
| HpyCH4IV | ACGT | 1 cut(s) | 381 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 11 |
| HpyF3I | CTNAG | 1 cut(s) | 180 |
| HpySE526I | ACGT | 1 cut(s) | 381 |
| Hsp92II | CATG | 1 cut(s) | 20 |
| Kzo9I | GATC | 1 cut(s) | 176 |
| LmnI | GCTCC | 1 cut(s) | 116 |
| LpnPI | CCDG | 5 cut(s) | 30, 114, 131, 230, 254 |
| LweI | GCATC | 1 cut(s) | 31 |
| MaeI | CTAG | 1 cut(s) | 194 |
| MaeII | ACGT | 1 cut(s) | 381 |
| MaeIII | GTNAC | 1 cut(s) | 294 |
| MalI | GATC | 1 cut(s) | 178 |
| MboI | GATC | 1 cut(s) | 176 |
| MboII | GAAGA | 5 cut(s) | 50, 162, 327, 378, 380 |
| MflI | RGATCY | 1 cut(s) | 176 |
| MluCI | AATT | 1 cut(s) | 127 |
| MnlI | CCTC | 5 cut(s) | 79, 168, 199, 292, 355 |
| MspA1I | CMGCKG | 1 cut(s) | 332 |
| MspI | CCGG | 1 cut(s) | 101 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 11 |
| NdeII | GATC | 1 cut(s) | 176 |
| NlaIII | CATG | 1 cut(s) | 20 |
| NmuCI | GTSAC | 1 cut(s) | 294 |
| PfeI | GAWTC | 3 cut(s) | 29, 77, 353 |
| PspFI | CCCAGC | 1 cut(s) | 145 |
| PsuI | RGATCY | 1 cut(s) | 176 |
| PvuII | CAGCTG | 1 cut(s) | 332 |
| RsaI | GTAC | 1 cut(s) | 111 |
| RsaNI | GTAC | 1 cut(s) | 110 |
| Sau3AI | GATC | 1 cut(s) | 176 |
| SetI | ASST | 7 cut(s) | 121, 147, 258, 334, 342, 384, 413 |
| SfaNI | GCATC | 1 cut(s) | 31 |
| SmlI | CTYRAG | 1 cut(s) | 227 |
| SmoI | CTYRAG | 1 cut(s) | 227 |
| Sse9I | AATT | 1 cut(s) | 127 |
| SsiI | CCGC | 1 cut(s) | 248 |
| SspMI | CTAG | 1 cut(s) | 194 |
| StyI | CCWWGG | 1 cut(s) | 397 |
| TaaI | ACNGT | 1 cut(s) | 405 |
| TaiI | ACGT | 1 cut(s) | 384 |
| TasI | AATT | 1 cut(s) | 127 |
| TatI | WGTACW | 1 cut(s) | 109 |
| TfiI | GAWTC | 3 cut(s) | 29, 77, 353 |
| TseFI | GTSAC | 1 cut(s) | 294 |
| Tsp45I | GTSAC | 1 cut(s) | 294 |
| TspDTI | ATGAA | 2 cut(s) | 105, 381 |
| XapI | RAATTY | 1 cut(s) | 127 |
| XspI | CTAG | 1 cut(s) | 194 |