Rw3G004810

Protein SPT2 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0004232
Physical Location & Seq
Reverse (-)
4066001 .. 4066966
966 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G004810.1

Sequence Viewer

Length: 966 bp
ATGTCGATGATGACGATTGGTGTTGCAGGTAACATGGGTATTCCTGAACTCCGGCAAATTCTGAAAGAGCGATACAGAATTGCTAATAACATGAAAAGCTGCTCGGCTGAGATGAAAGAGACCAAGAACTCATCCTTGTTTGGATCCTTGGAGTACTCTTTCTCACAAAGACTGATCGACGAGAGTAAAGCTCTTATGCCGGAGATGATCAATATTCTGGATAAGATGAACAACAATGATCATCAAAAGCCCACAAATTCCGGTGTGGATTTGAAGCTTGAGCGAGCTAAGAAGGTGAAGGAATCGCGTGATTACTCTTTCTTGTTATCAGAGACTTCAGAAGTTCCGAAGATTTCAAAAGCGTCACCACCAATGTCCATTCCTAAAGCTGATGGTAATGGGATCCCAAAGAAGAGTCATGATAAGGCGTCTTCTCTGAAACCAAAGAAGAGTGGTGATGATAACAACAAGTCCAAAGTCTCCTCGGCAAAGTCAGAGTCTGTTTCGAAAGATTCAGTTCTGGTTTCTGGTCCAGAGAGTTTTAAGTCTCGGCCTCGTGAGAACATGGTGACAAAGTCACAAGTTTCATCTACAAAGCAAACCTTGAACCCGAAACAAGCAGAGCTCTGTAACACAAAAGTGATGCCGAAAAAGGAAGGTCCTTGCCTGAAGAAAAAAATGATCAAGAAACGCCGAGTCGAAGAGGATTTGGTGGATGATGGCAATGTAGACTTTTCTTCACTAATCCAAGATATTATGGGGAGAAGAGGAAAGAGGCGATATAGGAATTATGGTGACGGCGGCGATGATCGTGCTATGGTGTCTGGCTTTAATGATATTCTGAAAGAAGAGAGGAGGAGTGCAGAGATTGCGAGGAAGGAGGATGCAATAGAGGCTCTAAGGCTTGAGCAAGAAGCCAAAGAAGAGAGGTTGAGCAAAGCAAAGAAGCAGAGGTTGGAGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SPT2

Protein Analysis

321

Amino Acids

36.1

Weight (kDa)

9.59

Isoelectric Point (pI)

48.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SPT2 PF08243 235 - 313 3.8e-12 SPT2 chromatin protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 17
AccI GTMKAC 1 cut(s) 729
AccII CGCG 1 cut(s) 307
AciI CCGC 1 cut(s) 801
AclWI GGATC 4 cut(s) 138, 151, 397, 410
AcsI RAATTY 2 cut(s) 57, 256
AcuI CTGAAG 2 cut(s) 321, 689
AcyI GRCGYC 1 cut(s) 428
AfaI GTAC 1 cut(s) 155
AgsI TTSAA 3 cut(s) 274, 357, 607
AjuI GAANNNNNNNTTGG 1 cut(s) 938
AleI CACNNNNGTG 1 cut(s) 638
AluBI AGCT 6 cut(s) 99, 191, 277, 287, 389, 625
AluI AGCT 6 cut(s) 99, 191, 277, 287, 389, 625
Alw21I GWGCWC 1 cut(s) 627
Alw26I GTCTC 4 cut(s) 113, 326, 484, 552
AlwI GGATC 4 cut(s) 138, 151, 397, 410
AlwNI CAGNNNCTG 1 cut(s) 500
AoxI GGCC 1 cut(s) 551
ApeKI GCWGC 1 cut(s) 99
ApoI RAATTY 2 cut(s) 57, 256
ArsI GACNNNNNNTTYG 2 cut(s) 482, 514
AspS9I GGNCC 2 cut(s) 530, 659
AsuHPI GGTGA 5 cut(s) 307, 357, 467, 580, 806
AsuII TTCGAA 1 cut(s) 506
AvaII GGWCC 2 cut(s) 530, 659
BamHI GGATCC 2 cut(s) 143, 402
BanII GRGCYC 1 cut(s) 627
BauI CACGAG 1 cut(s) 555
BbsI GAAGAC 1 cut(s) 423
Bbv12I GWGCWC 1 cut(s) 627
BbvI GCAGC 1 cut(s) 86
BccI CCATC 2 cut(s) 386, 713
BceAI ACGGC 1 cut(s) 814
BcgI CGANNNNNNTGC 2 cut(s) 794, 828
BclI TGATCA 3 cut(s) 207, 238, 681
BcoDI GTCTC 4 cut(s) 113, 326, 484, 552
BfuAI ACCTGC 1 cut(s) 17
BisI GCNGC 2 cut(s) 100, 802
BlsI GCNGC 2 cut(s) 101, 803
BmcAI AGTACT 1 cut(s) 155
Bme18I GGWCC 2 cut(s) 530, 659
BmgT120I GGNCC 2 cut(s) 530, 659
BmiI GGNNCC 2 cut(s) 145, 404
BmsI GCATC 2 cut(s) 633, 874
BpiI GAAGAC 1 cut(s) 423
BplI GAGNNNNNCTC 2 cut(s) 175, 207
Bpu14I TTCGAA 1 cut(s) 506
BpuEI CTTGAG 2 cut(s) 299, 926
BsaHI GRCGYC 1 cut(s) 428
BsaI GGTCTC 1 cut(s) 113
BsaJI CCNNGG 2 cut(s) 147, 483
BsaWI WCCGGW 1 cut(s) 260
Bse3DI GCAATG 1 cut(s) 730
BseDI CCNNGG 2 cut(s) 147, 483
BseGI GGATG 3 cut(s) 131, 721, 889
BseMI GCAATG 1 cut(s) 730
BseMII CTCAG 1 cut(s) 99
BseRI GAGGAG 3 cut(s) 472, 868, 871
BseXI GCAGC 1 cut(s) 86
BsgI GTGCAG 1 cut(s) 882
Bsh1236I CGCG 1 cut(s) 307
BshFI GGCC 1 cut(s) 553
BsiHKAI GWGCWC 1 cut(s) 627
BsiSI CCGG 3 cut(s) 52, 200, 261
BsmAI GTCTC 4 cut(s) 113, 326, 484, 552
BsnI GGCC 1 cut(s) 553
Bso31I GGTCTC 1 cut(s) 113
Bsp119I TTCGAA 1 cut(s) 506
Bsp1286I GDGCHC 1 cut(s) 627
Bsp143I GATC 7 cut(s) 143, 174, 207, 238, 402, 681, 808
BspACI CCGC 1 cut(s) 801
BspANI GGCC 1 cut(s) 553
BspCNI CTCAG 1 cut(s) 100
BspFNI CGCG 1 cut(s) 307
BspHI TCATGA 1 cut(s) 418
BspLI GGNNCC 2 cut(s) 145, 404
BspMI ACCTGC 1 cut(s) 17
BspPI GGATC 4 cut(s) 138, 151, 397, 410
BspT104I TTCGAA 1 cut(s) 506
BspTNI GGTCTC 1 cut(s) 113
BsrDI GCAATG 1 cut(s) 730
BssECI CCNNGG 2 cut(s) 147, 483
BssMI GATC 7 cut(s) 143, 174, 207, 238, 402, 681, 808
BssNI GRCGYC 1 cut(s) 428
BssSI CACGAG 1 cut(s) 555
BssT1I CCWWGG 1 cut(s) 147
Bst2BI CACGAG 1 cut(s) 555
Bst6I CTCTTC 6 cut(s) 407, 443, 696, 760, 843, 918
BstACI GRCGYC 1 cut(s) 428
BstAPI GCANNNNNTGC 1 cut(s) 869
BstBI TTCGAA 1 cut(s) 506
BstC8I GCNNGC 1 cut(s) 285
BstDEI CTNAG 3 cut(s) 108, 288, 899
BstF5I GGATG 3 cut(s) 131, 721, 889
BstFNI CGCG 1 cut(s) 307
BstKTI GATC 7 cut(s) 146, 177, 210, 241, 405, 684, 811
BstMAI GTCTC 4 cut(s) 113, 326, 484, 552
BstMBI GATC 7 cut(s) 143, 174, 207, 238, 402, 681, 808
BstMWI GCNNNNNNNGC 2 cut(s) 869, 893
BstUI CGCG 1 cut(s) 307
BstV1I GCAGC 1 cut(s) 86
BstV2I GAAGAC 1 cut(s) 423
BstX2I RGATCY 2 cut(s) 143, 402
BstYI RGATCY 2 cut(s) 143, 402
BsuRI GGCC 1 cut(s) 553
BtgZI GCGATG 1 cut(s) 819
BtsCI GGATG 3 cut(s) 131, 721, 889
BveI ACCTGC 1 cut(s) 17
Cac8I GCNNGC 1 cut(s) 285
CaiI CAGNNNCTG 1 cut(s) 500
CciI TCATGA 1 cut(s) 418
Cfr13I GGNCC 2 cut(s) 530, 659
CseI GACGC 2 cut(s) 351, 417
Csp6I GTAC 1 cut(s) 154
CviAII CATG 4 cut(s) 34, 91, 419, 565
CviQI GTAC 1 cut(s) 154
DdeI CTNAG 3 cut(s) 108, 288, 899
DpnI GATC 7 cut(s) 145, 176, 209, 240, 404, 683, 810
DpnII GATC 7 cut(s) 143, 174, 207, 238, 402, 681, 808
Eam1104I CTCTTC 6 cut(s) 407, 443, 696, 760, 843, 918
EarI CTCTTC 6 cut(s) 407, 443, 696, 760, 843, 918
Ecl136II GAGCTC 1 cut(s) 625
Eco130I CCWWGG 1 cut(s) 147
Eco24I GRGCYC 1 cut(s) 627
Eco31I GGTCTC 1 cut(s) 113
Eco47I GGWCC 2 cut(s) 530, 659
Eco53kI GAGCTC 1 cut(s) 625
Eco57I CTGAAG 2 cut(s) 321, 689
EcoICRI GAGCTC 1 cut(s) 625
EcoO109I RGGNCCY 1 cut(s) 659
EcoT14I CCWWGG 1 cut(s) 147
EcoT38I GRGCYC 1 cut(s) 627
ErhI CCWWGG 1 cut(s) 147
FaeI CATG 4 cut(s) 37, 94, 422, 568
FaiI YATR 9 cut(s) 35, 92, 197, 420, 566, 758, 783, 792, 818
FalI AAGNNNNNCTT 2 cut(s) 587, 619
FatI CATG 4 cut(s) 33, 90, 418, 564
FbaI TGATCA 3 cut(s) 207, 238, 681
FblI GTMKAC 1 cut(s) 729
Fnu4HI GCNGC 2 cut(s) 100, 802
FokI GGATG 3 cut(s) 118, 728, 896
FriOI GRGCYC 1 cut(s) 627
Fsp4HI GCNGC 2 cut(s) 100, 802
GluI GCNGC 2 cut(s) 100, 802
HaeIII GGCC 1 cut(s) 553
HapII CCGG 3 cut(s) 52, 200, 261
HgaI GACGC 2 cut(s) 351, 417
Hin1I GRCGYC 1 cut(s) 428
Hin1II CATG 4 cut(s) 37, 94, 422, 568
HindIII AAGCTT 1 cut(s) 275
HinfI GANTC 5 cut(s) 302, 415, 497, 512, 696
HpaII CCGG 3 cut(s) 52, 200, 261
HphI GGTGA 5 cut(s) 307, 357, 467, 580, 806
Hpy166II GTNNAC 1 cut(s) 730
Hpy188I TCNGA 7 cut(s) 63, 331, 340, 348, 438, 496, 843
Hpy188III TCNNGA 6 cut(s) 44, 218, 419, 533, 557, 685
Hpy8I GTNNAC 1 cut(s) 730
Hpy99I CGWCG 1 cut(s) 182
HpyAV CCTTC 4 cut(s) 286, 292, 650, 871
HpyCH4V TGCA 3 cut(s) 26, 863, 887
HpyF10VI GCNNNNNNNGC 2 cut(s) 869, 893
HpyF3I CTNAG 3 cut(s) 108, 288, 899
Hsp92I GRCGYC 1 cut(s) 428
Hsp92II CATG 4 cut(s) 37, 94, 422, 568
Ksp22I TGATCA 3 cut(s) 207, 238, 681
Kzo9I GATC 7 cut(s) 143, 174, 207, 238, 402, 681, 808
Lsp1109I GCAGC 1 cut(s) 86
LweI GCATC 2 cut(s) 633, 874
MaeIII GTNAC 6 cut(s) 29, 363, 568, 576, 629, 794
MalI GATC 7 cut(s) 145, 176, 209, 240, 404, 683, 810
MboI GATC 7 cut(s) 143, 174, 207, 238, 402, 681, 808
MflI RGATCY 2 cut(s) 143, 402
MhlI GDGCHC 1 cut(s) 627
MluCI AATT 5 cut(s) 57, 78, 256, 787, 961
MlyI GAGTC 3 cut(s) 424, 506, 705
MmeI TCCRAC 1 cut(s) 936
MseI TTAA 2 cut(s) 543, 831
MslI CAYNNNNRTG 1 cut(s) 638
MspI CCGG 3 cut(s) 52, 200, 261
MvnI CGCG 1 cut(s) 307
MwoI GCNNNNNNNGC 2 cut(s) 869, 893
NdeII GATC 7 cut(s) 143, 174, 207, 238, 402, 681, 808
NlaIII CATG 4 cut(s) 37, 94, 422, 568
NlaIV GGNNCC 2 cut(s) 145, 404
NmeAIII GCCGAG 4 cut(s) 83, 464, 529, 719
NmuCI GTSAC 4 cut(s) 363, 568, 576, 794
NspV TTCGAA 1 cut(s) 506
OliI CACNNNNGTG 1 cut(s) 638
PagI TCATGA 1 cut(s) 418
PcsI WCGNNNNNNNCGW 1 cut(s) 11
PfeI GAWTC 2 cut(s) 302, 512
PflFI GACNNNGTC 1 cut(s) 574
PkrI GCNGC 2 cut(s) 101, 803
PleI GAGTC 3 cut(s) 423, 505, 704
PpsI GAGTC 3 cut(s) 423, 505, 704
PpuMI RGGWCCY 1 cut(s) 659
Psp124BI GAGCTC 1 cut(s) 627
Psp5II RGGWCCY 1 cut(s) 659
PspN4I GGNNCC 2 cut(s) 145, 404
PspPI GGNCC 2 cut(s) 530, 659
PspPPI RGGWCCY 1 cut(s) 659
PstNI CAGNNNCTG 1 cut(s) 500
PsuI RGATCY 2 cut(s) 143, 402
PsyI GACNNNGTC 1 cut(s) 574
RsaI GTAC 1 cut(s) 155
RsaNI GTAC 1 cut(s) 154
RseI CAYNNNNRTG 1 cut(s) 638
SacI GAGCTC 1 cut(s) 627
SaqAI TTAA 2 cut(s) 543, 831
SatI GCNGC 2 cut(s) 100, 802
Sau3AI GATC 7 cut(s) 143, 174, 207, 238, 402, 681, 808
Sau96I GGNCC 2 cut(s) 530, 659
ScaI AGTACT 1 cut(s) 155
SchI GAGTC 3 cut(s) 424, 506, 705
SduI GDGCHC 1 cut(s) 627
SfaNI GCATC 2 cut(s) 633, 874
SfuI TTCGAA 1 cut(s) 506
SinI GGWCC 2 cut(s) 530, 659
SmiMI CAYNNNNRTG 1 cut(s) 638
SmlI CTYRAG 2 cut(s) 278, 905
SmoI CTYRAG 2 cut(s) 278, 905
Sse9I AATT 5 cut(s) 57, 78, 256, 787, 961
SsiI CCGC 1 cut(s) 801
SspI AATATT 1 cut(s) 214
SstI GAGCTC 1 cut(s) 627
StyI CCWWGG 1 cut(s) 147
TaqI TCGA 4 cut(s) 5, 177, 506, 699
TasI AATT 5 cut(s) 57, 78, 256, 787, 961
TatI WGTACW 1 cut(s) 153
TauI GCSGC 1 cut(s) 804
TfiI GAWTC 2 cut(s) 302, 512
Tru1I TTAA 2 cut(s) 543, 831
Tru9I TTAA 2 cut(s) 543, 831
TseFI GTSAC 4 cut(s) 363, 568, 576, 794
TseI GCWGC 1 cut(s) 99
Tsp45I GTSAC 4 cut(s) 363, 568, 576, 794
TspDTI ATGAA 4 cut(s) 107, 128, 242, 576
Tth111I GACNNNGTC 1 cut(s) 574
VpaK11BI GGWCC 2 cut(s) 530, 659
XapI RAATTY 2 cut(s) 57, 256
XmiI GTMKAC 1 cut(s) 729
ZrmI AGTACT 1 cut(s) 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.