Rorug03G0001900

SPT2 chromatin protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0004232
Physical Location & Seq
Forward (+)
225570 .. 230224
4655 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0001900.1

Sequence Viewer

Length: 1095 bp
ATGCTGAGCAGAGCAACAGCCAGAGCATCAAACCACTTGTTCTTCAAGAACAAGAACAAGAATTCTCAGTTACTAGGGCTCAGCAACAATCTCTCATATGCTGCTTCAAACCCTGTATCTAACTTTGTGAGCATCACATGGAACAACAACAACACCTCTAGAATGTCAAAAATGAAGAGTTTCACAACCCGAGCAACCGCGCAGCCTCTCAAGAATGCTGATGAGCTCATCGACTCTGTCGAGACCTTCATCTTCGATTGCGATGGAGTTATATGGAAAGGAGATAAGCTGATAGATGGCGTCCCAGAAACTCTTGATATGCTACGGTCCAAGGGCAAAAGATTAGTCTTTGTTACCAACAACTCAACAAAATCTAGGAAGCAATATGGTAAAAAGTTTGAGACACTTGGTCTGAATGTCAGTGAGGAAGAAATTTTTGCTTCATCTTTTGCTGCTGCTGCCTATTTGAAGTCCATAAATTTTCCAAAAGATAAAAAGGTTTACGTGATTGGTGAGGATGGTATCTTGAAGGAGCTTGAGCTTGCTGGATTTCAATACCTTGGTGGACCAGAAGATGGAGAGAAGAAGATAGAGCTGAAGCCTGGATTTCTGATGGAGCATGATGAGAGCGTTGGAGCTGTTGTGGTTGGATTTGATCGATATGTCAACTACTTCAAAATTCAGTATGGGACACTCTGTATACGTGAAAACCCTGGATGTCTTTTCATTGCAACAAATCGTGATGCTGTCACTCATCTCACAGATGCTCAGGAATGGGCAGGTGGTGGTTCCATGGTTGGTGCTATCCAGGGATCTACTCAGCGTGAGCCACTGGTTGTGGGAAAGCCCTCCACATTTATGATGGACTACTTAGCAAATGAATTTGGCATACTCAAGTCACAAATTTGCATGGTCGGGGACAGATTGGATACTGATATTCTGTTTGGACAAAACGGTGGTTGCAAAACTCTTCTTGTTCTCTCAGGTGTCACCACTTTACCAGTGCTTCAAAATCCCAGCAACACCATACAACCAGATTTTTACACCAACAAGATCTCAGACTTTTTGTCTCTCAAGCCTGCTGCAACCGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SPT2

Protein Analysis

364

Amino Acids

40.09

Weight (kDa)

7.56

Isoelectric Point (pI)

25.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hydrolase PF00702 81 - 320 7.5e-14 haloacid dehalogenase-like hydrolase
Hydrolase_6 PF13344 83 - 185 2.4e-35 Haloacid dehalogenase-like hydrolase
Hydrolase_like PF13242 280 - 354 2.2e-20 HAD-hyrolase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 770
Acc36I ACCTGC 1 cut(s) 770
AccB7I CCANNNNNTGG 1 cut(s) 575
AccI GTMKAC 1 cut(s) 700
AccII CGCG 1 cut(s) 200
AciI CCGC 1 cut(s) 198
AclWI GGATC 1 cut(s) 820
AcsI RAATTY 6 cut(s) 61, 432, 478, 678, 881, 903
AcuI CTGAAG 1 cut(s) 617
AcyI GRCGYC 1 cut(s) 300
AfiI CCNNNNNNNGG 1 cut(s) 575
AgsI TTSAA 7 cut(s) 46, 108, 469, 529, 554, 676, 1010
AhdI GACNNNNNGTC 2 cut(s) 408, 1066
AjnI CCWGG 3 cut(s) 601, 712, 807
AluBI AGCT 6 cut(s) 226, 289, 535, 541, 595, 638
AluI AGCT 6 cut(s) 226, 289, 535, 541, 595, 638
Alw21I GWGCWC 1 cut(s) 228
Alw26I GTCTC 3 cut(s) 236, 395, 1074
AlwI GGATC 1 cut(s) 820
Ama87I CYCGRG 1 cut(s) 189
ApeKI GCWGC 6 cut(s) 101, 202, 452, 455, 458, 1082
ApoI RAATTY 6 cut(s) 61, 432, 478, 678, 881, 903
ArsI GACNNNNNNTTYG 2 cut(s) 330, 362
Asp700I GAANNNNTTC 1 cut(s) 179
AspLEI GCGC 1 cut(s) 202
AspS9I GGNCC 2 cut(s) 327, 566
AsuHPI GGTGA 2 cut(s) 524, 982
AvaI CYCGRG 1 cut(s) 189
AvaII GGWCC 2 cut(s) 327, 566
BanII GRGCYC 2 cut(s) 81, 228
Bbv12I GWGCWC 1 cut(s) 228
BbvI GCAGC 6 cut(s) 88, 214, 439, 442, 445, 1069
BccI CCATC 6 cut(s) 257, 290, 512, 569, 607, 856
BciT130I CCWGG 3 cut(s) 603, 714, 809
BciVI GTATCC 1 cut(s) 922
BcoDI GTCTC 3 cut(s) 236, 395, 1074
BfaI CTAG 3 cut(s) 74, 159, 375
BfuAI ACCTGC 1 cut(s) 770
BfuI GTATCC 1 cut(s) 922
BglII AGATCT 1 cut(s) 1053
BisI GCNGC 6 cut(s) 102, 203, 453, 456, 459, 1083
BlpI GCTNAGC 2 cut(s) 5, 80
BlsI GCNGC 6 cut(s) 103, 204, 454, 457, 460, 1084
Bme1390I CCNGG 3 cut(s) 603, 714, 809
Bme18I GGWCC 2 cut(s) 327, 566
BmeRI GACNNNNNGTC 2 cut(s) 408, 1066
BmeT110I CYCGRG 1 cut(s) 189
BmgT120I GGNCC 2 cut(s) 327, 566
BmiI GGNNCC 1 cut(s) 790
BmrFI CCNGG 3 cut(s) 603, 714, 809
BmsI GCATC 4 cut(s) 35, 141, 733, 754
Bpu10I CCTNAGC 1 cut(s) 768
Bpu1102I GCTNAGC 2 cut(s) 5, 80
BpuEI CTTGAG 4 cut(s) 194, 557, 878, 1058
Bsa29I ATCGAT 1 cut(s) 658
BsaAI YACGTR 2 cut(s) 505, 704
BsaHI GRCGYC 1 cut(s) 300
BsaI GGTCTC 1 cut(s) 236
BsaJI CCNNGG 5 cut(s) 330, 559, 712, 792, 808
BsaXI ACNNNNNCTCC 2 cut(s) 627, 657
Bsc4I CCNNNNNNNGG 1 cut(s) 575
Bse1I ACTGG 2 cut(s) 837, 1001
Bse3DI GCAATG 1 cut(s) 726
BseBI CCWGG 3 cut(s) 603, 714, 809
BseCI ATCGAT 1 cut(s) 658
BseDI CCNNGG 5 cut(s) 330, 559, 712, 792, 808
BseGI GGATG 2 cut(s) 523, 722
BseLI CCNNNNNNNGG 1 cut(s) 575
BseMI GCAATG 1 cut(s) 726
BseMII CTCAG 6 cut(s) 80, 94, 782, 833, 996, 1071
BseNI ACTGG 2 cut(s) 837, 1001
BseXI GCAGC 6 cut(s) 88, 214, 439, 442, 445, 1069
BseYI CCCAGC 1 cut(s) 1016
Bsh1236I CGCG 1 cut(s) 200
BshVI ATCGAT 1 cut(s) 658
BsiHKAI GWGCWC 1 cut(s) 228
BsiHKCI CYCGRG 1 cut(s) 189
BslFI GGGAC 3 cut(s) 287, 703, 932
BslI CCNNNNNNNGG 1 cut(s) 575
BsmAI GTCTC 3 cut(s) 236, 395, 1074
BsmFI GGGAC 3 cut(s) 287, 703, 932
BsmI GAATGC 1 cut(s) 220
Bso31I GGTCTC 1 cut(s) 236
BsoBI CYCGRG 1 cut(s) 189
Bsp1286I GDGCHC 2 cut(s) 81, 228
Bsp143I GATC 3 cut(s) 655, 812, 1053
Bsp1720I GCTNAGC 2 cut(s) 5, 80
Bsp19I CCATGG 1 cut(s) 792
BspACI CCGC 1 cut(s) 198
BspCNI CTCAG 6 cut(s) 79, 93, 781, 832, 995, 1070
BspDI ATCGAT 1 cut(s) 658
BspFNI CGCG 1 cut(s) 200
BspLI GGNNCC 1 cut(s) 790
BspMI ACCTGC 1 cut(s) 770
BspPI GGATC 1 cut(s) 820
BspTNI GGTCTC 1 cut(s) 236
BsrDI GCAATG 1 cut(s) 726
BsrI ACTGG 2 cut(s) 837, 1001
BssECI CCNNGG 5 cut(s) 330, 559, 712, 792, 808
BssMI GATC 3 cut(s) 655, 812, 1053
BssNAI GTATAC 1 cut(s) 701
BssNI GRCGYC 1 cut(s) 300
BssT1I CCWWGG 3 cut(s) 330, 559, 792
Bst1107I GTATAC 1 cut(s) 701
Bst2UI CCWGG 3 cut(s) 603, 714, 809
Bst4CI ACNGT 3 cut(s) 327, 956, 1090
Bst6I CTCTTC 2 cut(s) 170, 975
BstACI GRCGYC 1 cut(s) 300
BstBAI YACGTR 2 cut(s) 505, 704
BstC8I GCNNGC 2 cut(s) 543, 1080
BstDEI CTNAG 8 cut(s) 5, 66, 80, 768, 819, 871, 982, 1057
BstDSI CCRYGG 1 cut(s) 792
BstF5I GGATG 2 cut(s) 523, 722
BstFNI CGCG 1 cut(s) 200
BstHHI GCGC 1 cut(s) 202
BstKTI GATC 3 cut(s) 658, 815, 1056
BstMAI GTCTC 3 cut(s) 236, 395, 1074
BstMBI GATC 3 cut(s) 655, 812, 1053
BstMWI GCNNNNNNNGC 1 cut(s) 458
BstNI CCWGG 3 cut(s) 603, 714, 809
BstSCI CCNGG 3 cut(s) 601, 712, 807
BstUI CGCG 1 cut(s) 200
BstV1I GCAGC 6 cut(s) 88, 214, 439, 442, 445, 1069
BstX2I RGATCY 2 cut(s) 812, 1053
BstYI RGATCY 2 cut(s) 812, 1053
BstZ17I GTATAC 1 cut(s) 701
Bsu15I ATCGAT 1 cut(s) 658
BsuI GTATCC 1 cut(s) 922
BsuTUI ATCGAT 1 cut(s) 658
BtgI CCRYGG 1 cut(s) 792
BtgZI GCGATG 1 cut(s) 276
BtsCI GGATG 2 cut(s) 523, 722
BtsIMutI CAGTG 3 cut(s) 427, 830, 1008
BveI ACCTGC 1 cut(s) 770
Cac8I GCNNGC 2 cut(s) 543, 1080
CfoI GCGC 1 cut(s) 202
Cfr13I GGNCC 2 cut(s) 327, 566
ClaI ATCGAT 1 cut(s) 658
CseI GACGC 1 cut(s) 289
CviAII CATG 4 cut(s) 138, 620, 793, 910
DdeI CTNAG 8 cut(s) 5, 66, 80, 768, 819, 871, 982, 1057
DpnI GATC 3 cut(s) 657, 814, 1055
DpnII GATC 3 cut(s) 655, 812, 1053
DriI GACNNNNNGTC 2 cut(s) 408, 1066
Eam1104I CTCTTC 2 cut(s) 170, 975
Eam1105I GACNNNNNGTC 2 cut(s) 408, 1066
EarI CTCTTC 2 cut(s) 170, 975
Ecl136II GAGCTC 1 cut(s) 226
Eco130I CCWWGG 3 cut(s) 330, 559, 792
Eco24I GRGCYC 2 cut(s) 81, 228
Eco31I GGTCTC 1 cut(s) 236
Eco47I GGWCC 2 cut(s) 327, 566
Eco53kI GAGCTC 1 cut(s) 226
Eco57I CTGAAG 1 cut(s) 617
Eco88I CYCGRG 1 cut(s) 189
EcoICRI GAGCTC 1 cut(s) 226
EcoRI GAATTC 1 cut(s) 61
EcoRII CCWGG 3 cut(s) 601, 712, 807
EcoT14I CCWWGG 3 cut(s) 330, 559, 792
EcoT38I GRGCYC 2 cut(s) 81, 228
ErhI CCWWGG 3 cut(s) 330, 559, 792
FaeI CATG 4 cut(s) 141, 623, 796, 913
FaqI GGGAC 3 cut(s) 287, 703, 932
FatI CATG 4 cut(s) 137, 619, 792, 909
FauNDI CATATG 1 cut(s) 97
FblI GTMKAC 1 cut(s) 700
Fnu4HI GCNGC 6 cut(s) 102, 203, 453, 456, 459, 1083
FokI GGATG 2 cut(s) 530, 729
FriOI GRGCYC 2 cut(s) 81, 228
Fsp4HI GCNGC 6 cut(s) 102, 203, 453, 456, 459, 1083
FspBI CTAG 3 cut(s) 74, 159, 375
GlaI GCGC 1 cut(s) 201
GluI GCNGC 6 cut(s) 102, 203, 453, 456, 459, 1083
GsaI CCCAGC 1 cut(s) 1020
HgaI GACGC 1 cut(s) 289
HhaI GCGC 1 cut(s) 202
Hin1I GRCGYC 1 cut(s) 300
Hin1II CATG 4 cut(s) 141, 623, 796, 913
Hin6I GCGC 1 cut(s) 200
HinP1I GCGC 1 cut(s) 200
HincII GTYRAC 1 cut(s) 667
HindII GTYRAC 1 cut(s) 667
HinfI GANTC 1 cut(s) 233
HphI GGTGA 2 cut(s) 524, 982
Hpy166II GTNNAC 4 cut(s) 502, 566, 667, 701
Hpy188I TCNGA 3 cut(s) 414, 612, 1060
Hpy188III TCNNGA 8 cut(s) 46, 159, 211, 241, 314, 526, 740, 770
Hpy8I GTNNAC 4 cut(s) 502, 566, 667, 701
HpyAV CCTTC 2 cut(s) 256, 523
HpyCH4III ACNGT 3 cut(s) 327, 956, 1090
HpyCH4IV ACGT 2 cut(s) 504, 703
HpyCH4V TGCA 4 cut(s) 731, 909, 963, 1085
HpyF10VI GCNNNNNNNGC 1 cut(s) 458
HpyF3I CTNAG 8 cut(s) 5, 66, 80, 768, 819, 871, 982, 1057
HpySE526I ACGT 2 cut(s) 504, 703
Hsp92I GRCGYC 1 cut(s) 300
Hsp92II CATG 4 cut(s) 141, 623, 796, 913
HspAI GCGC 1 cut(s) 200
Kzo9I GATC 3 cut(s) 655, 812, 1053
LmnI GCTCC 3 cut(s) 532, 616, 635
Lsp1109I GCAGC 6 cut(s) 88, 214, 439, 442, 445, 1069
LweI GCATC 4 cut(s) 35, 141, 733, 754
MaeI CTAG 3 cut(s) 74, 159, 375
MaeII ACGT 2 cut(s) 504, 703
MaeIII GTNAC 5 cut(s) 69, 352, 748, 897, 988
MalI GATC 3 cut(s) 657, 814, 1055
MboI GATC 3 cut(s) 655, 812, 1053
MboII GAAGA 8 cut(s) 34, 187, 244, 440, 584, 595, 598, 962
MflI RGATCY 2 cut(s) 812, 1053
MhlI GDGCHC 2 cut(s) 81, 228
MluCI AATT 6 cut(s) 61, 432, 478, 678, 881, 903
MlyI GAGTC 1 cut(s) 227
MmeI TCCRAC 2 cut(s) 613, 628
MnlI CCTC 5 cut(s) 166, 216, 418, 508, 859
MroXI GAANNNNTTC 1 cut(s) 179
MslI CAYNNNNRTG 1 cut(s) 857
MspR9I CCNGG 3 cut(s) 603, 714, 809
Mva1269I GAATGC 1 cut(s) 220
MvaI CCWGG 3 cut(s) 603, 714, 809
MvnI CGCG 1 cut(s) 200
MwoI GCNNNNNNNGC 1 cut(s) 458
NcoI CCATGG 1 cut(s) 792
NdeI CATATG 1 cut(s) 97
NdeII GATC 3 cut(s) 655, 812, 1053
NlaIII CATG 4 cut(s) 141, 623, 796, 913
NlaIV GGNNCC 1 cut(s) 790
NmuCI GTSAC 3 cut(s) 748, 897, 988
PaqCI CACCTGC 1 cut(s) 770
PcsI WCGNNNNNNNCGW 1 cut(s) 237
PctI GAATGC 1 cut(s) 220
PdmI GAANNNNTTC 1 cut(s) 179
PflFI GACNNNGTC 1 cut(s) 236
PflMI CCANNNNNTGG 1 cut(s) 575
PkrI GCNGC 6 cut(s) 103, 204, 454, 457, 460, 1084
PleI GAGTC 1 cut(s) 227
PpsI GAGTC 1 cut(s) 227
Ppu21I YACGTR 2 cut(s) 505, 704
Psp124BI GAGCTC 1 cut(s) 228
Psp6I CCWGG 3 cut(s) 601, 712, 807
PspFI CCCAGC 1 cut(s) 1016
PspGI CCWGG 3 cut(s) 601, 712, 807
PspN4I GGNNCC 1 cut(s) 790
PspPI GGNCC 2 cut(s) 327, 566
PsuI RGATCY 2 cut(s) 812, 1053
PsyI GACNNNGTC 1 cut(s) 236
RseI CAYNNNNRTG 1 cut(s) 857
SacI GAGCTC 1 cut(s) 228
SatI GCNGC 6 cut(s) 102, 203, 453, 456, 459, 1083
Sau3AI GATC 3 cut(s) 655, 812, 1053
Sau96I GGNCC 2 cut(s) 327, 566
SchI GAGTC 1 cut(s) 227
ScrFI CCNGG 3 cut(s) 603, 714, 809
SduI GDGCHC 2 cut(s) 81, 228
SfaNI GCATC 4 cut(s) 35, 141, 733, 754
SinI GGWCC 2 cut(s) 327, 566
SmiMI CAYNNNNRTG 1 cut(s) 857
SmlI CTYRAG 4 cut(s) 209, 536, 893, 1073
SmoI CTYRAG 4 cut(s) 209, 536, 893, 1073
Sse9I AATT 6 cut(s) 61, 432, 478, 678, 881, 903
SsiI CCGC 1 cut(s) 198
SspMI CTAG 3 cut(s) 74, 159, 375
SstI GAGCTC 1 cut(s) 228
StyD4I CCNGG 3 cut(s) 601, 712, 807
StyI CCWWGG 3 cut(s) 330, 559, 792
TaaI ACNGT 3 cut(s) 327, 956, 1090
TaiI ACGT 2 cut(s) 507, 706
TaqI TCGA 4 cut(s) 231, 240, 255, 658
TasI AATT 6 cut(s) 61, 432, 478, 678, 881, 903
TscAI CASTG 3 cut(s) 427, 837, 1008
TseFI GTSAC 3 cut(s) 748, 897, 988
TseI GCWGC 6 cut(s) 101, 202, 452, 455, 458, 1082
Tsp45I GTSAC 3 cut(s) 748, 897, 988
TspDTI ATGAA 5 cut(s) 188, 238, 432, 715, 894
TspRI CASTG 3 cut(s) 427, 837, 1008
Tth111I GACNNNGTC 1 cut(s) 236
Van91I CCANNNNNTGG 1 cut(s) 575
VpaK11BI GGWCC 2 cut(s) 327, 566
XapI RAATTY 6 cut(s) 61, 432, 478, 678, 881, 903
XbaI TCTAGA 1 cut(s) 158
XcmI CCANNNNNNNNNTGG 1 cut(s) 859
XmiI GTMKAC 1 cut(s) 700
XmnI GAANNNNTTC 1 cut(s) 179
XspI CTAG 3 cut(s) 74, 159, 375
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.