Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0004232

Physical Location & Seq

Genomic Coordinates Reverse (-)

4881439 .. 4884062

Gene Structure 2624 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G068500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1314 bp

ATGGGTGCACTCTGTGTCCATTCTACTAAGAAGGAATTGGACTTTCTTCAACTGAGGCAGCAACTCAAACAACGCATCAGAAATAATCATGCCAAGGAGGTGGTGTCTGTTTGTGACGGCTCGATTGATAAGAAGAACAAGTTGCCGTGTGACAACTTCGGATCCTTCTTTGGCCCCTCGCAGCATTCCATTGTACAAAGATTGATCGAGGAAAGCAAATCTTTAATGCCGGAGTTAAAGGTTTTGGCATCTAGGGTTCTTAAAAATTCCCAAGACAAGGGTAAAAAGAGCCTCAAGATTCCTGCCTCGGCCACAACAAAATCTCGTTCGACGGATTTGAAACTCAAGTGTAAAAGCATCAAAGAGTCCCGGGATTACTCGTTTTTGTTCTCAGACAATGCCGAAGTTCCAAAAGCTTCAAAAGAAGAGCCTGCACTTGGTAAAGATTCTGCCTCAAAGCCGAGTGAAGAAAGAAACCCGGGTTCGGGTTTCGGGATACAAAGAAGTTCTGGGACTGGGAGAGATTTGAAGACTATGGGGGCACGATTGATCTTCCGTTCTTCTACGAAGAAGGAATTGGACTTTCTTCAACTAAGGCAGCAACTCAAACAACGCATCAGAAACAATCATGCCGAGGAGGTGGTGGTGTCTGTTCGTGACGGCTCGATTCATGAGAAGAACAAGATGCCTTGTGACAACTTCGGATCCTTCTTTGGGCCCTCGCACCATGCCATTGCGCAGAGAGTGATTCAAGAAAGCAAAGCTTTAATGCCGGAGTTGAAGGTTTTGGCATCTAGGGCTTTTCGAAATTCCCAAGACCAGGGTAAAAAGAGCCTCAAGATTCCTGTCGATTTGAAACTCAAGTGTAAAAGCATAAAAGAGTCCCGGGATTACTCCTTTTTGTTCTCAGACGATGCCGAAATTCCGAAATCTTCAAAAGGAGAACCTGCACTTGGTAAAGTGTCTACCCCAAAGCCAAGTGAAGAAAGAAATCCGGGTTTCGGCGGGATACGAAGAGGTTCTGGGAGAGATTTGAAGATTGTAAGAAAGCAAAATCCGGAAGAGAAAGAGAGGCCAAAGAAGCCTTCTTGTGTGATGAAGGAGAAGGAGAGACATCGTAAGCGCTTTAGGGTAGAGGAGGATGAGGATGATGATAGTGTAATGGTGTCCACCTTTGATGACATTCTAAGAGAAGAGAGGAAAAGTGAAAGAATTGGCAGGAAGGAGGATGAAAAAGAGCGGCTATTGATTCAGCAAGAAGAGAAGCAAGCTAGGTTCAGAAAAGCAAAGAAGCTGAGAGCATCCAAAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SPT2

Protein Analysis

438

Amino Acids

49.71

Weight (kDa)

9.84

Isoelectric Point (pI)

49.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004232)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g35540 FvH4_6g05810
prunus_persica	Prupe.1G068500_v2.0.a1 Prupe.2G308100_v2.0.a1
pyrus_communis	pycom01g22690 pycom05g13400
rosa_laevigata	RLG00000005759 RLG00000025421
rosa_multiflora	Rmu_co8287015.1_g000001 Rmu_sc0000050.1_g000036 Rmu_sc0001792.1_g000022 Rmu_sc0003140.1_g000017
rosa_roxburghii	Rroxscaffold_5G00385700 Rroxscaffold_6G00424820
rosa_rugosa	Rorug03G0001600 Rorug03G0001900 Rorug03G0001900 Rorug04G0359700
rosa_samantha	Rh3AG061500 Rh3AG061900 Rh3BG063300 Rh3BG063700 Rh3CG062200 Rh3CG062600 Rh3DG063200 Rh3DG063300 Rh3DG063400 Rh4AG420600 Rh4BG432500 Rh4CG447100 Rh4DG428600
rosa_wichuraiana	Rw3G004810 Rw4G036070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	738
Acc36I	ACCTGC	1 cut(s)	955
AccBSI	CCGCTC	1 cut(s)	1240
AccI	GTMKAC	1 cut(s)	965
AccIII	TCCGGA	1 cut(s)	1057
AciI	CCGC	2 cut(s)	1005, 1240
AclWI	GGATC	4 cut(s)	156, 169, 699, 712
AcoI	YGGCCR	1 cut(s)	309
AcsI	RAATTY	3 cut(s)	265, 808, 921
AdeI	CACNNNGTG	1 cut(s)	14
AfaI	GTAC	1 cut(s)	195
AfeI	AGCGCT	1 cut(s)	1124
AfiI	CCNNNNNNNGG	8 cut(s)	277, 437, 484, 485, 714, 820, 953, 1001
AjnI	CCWGG	1 cut(s)	819
AjuI	GAANNNNNNNTTGG	6 cut(s)	560, 592, 936, 968, 1069, 1101
AluBI	AGCT	4 cut(s)	416, 764, 1271, 1294
AluI	AGCT	4 cut(s)	416, 764, 1271, 1294
Alw21I	GWGCWC	1 cut(s)	10
Alw26I	GTCTC	1 cut(s)	1105
Alw44I	GTGCAC	1 cut(s)	6
AlwI	GGATC	4 cut(s)	156, 169, 699, 712
Ama87I	CYCGRG	3 cut(s)	369, 478, 885
Aor13HI	TCCGGA	1 cut(s)	1057
Aor51HI	AGCGCT	1 cut(s)	1124
AoxI	GGCC	4 cut(s)	172, 309, 716, 1073
ApaI	GGGCCC	1 cut(s)	720
ApaLI	GTGCAC	1 cut(s)	6
ApeKI	GCWGC	3 cut(s)	58, 181, 598
ApoI	RAATTY	3 cut(s)	265, 808, 921
Asp700I	GAANNNNTTC	1 cut(s)	1018
AspLEI	GCGC	2 cut(s)	739, 1125
AspS9I	GGNCC	3 cut(s)	173, 716, 717
AsuC2I	CCSGG	7 cut(s)	370, 371, 479, 480, 886, 887, 996
AsuII	TTCGAA	1 cut(s)	805
AvaI	CYCGRG	3 cut(s)	369, 478, 885
BaeGI	GKGCMC	3 cut(s)	10, 544, 720
BamHI	GGATCC	2 cut(s)	161, 704
BanII	GRGCYC	1 cut(s)	720
BbsI	GAAGAC	1 cut(s)	536
Bbv12I	GWGCWC	1 cut(s)	10
BbvI	GCAGC	3 cut(s)	70, 193, 610
BceAI	ACGGC	3 cut(s)	130, 133, 676
BciT130I	CCWGG	1 cut(s)	821
BciVI	GTATCC	2 cut(s)	489, 1002
BcnI	CCSGG	7 cut(s)	370, 371, 479, 480, 886, 887, 996
BcoDI	GTCTC	1 cut(s)	1105
BfaI	CTAG	3 cut(s)	252, 795, 1272
BfoI	RGCGCY	1 cut(s)	1126
BfuAI	ACCTGC	1 cut(s)	955
BfuI	GTATCC	2 cut(s)	489, 1002
BisI	GCNGC	4 cut(s)	59, 182, 599, 1241
BlsI	GCNGC	4 cut(s)	60, 183, 600, 1242
Bme1390I	CCNGG	8 cut(s)	370, 371, 479, 480, 821, 886, 887, 996
BmeT110I	CYCGRG	3 cut(s)	369, 478, 885
BmgT120I	GGNCC	3 cut(s)	173, 716, 717
BmiI	GGNNCC	4 cut(s)	163, 175, 706, 718
BmrFI	CCNGG	8 cut(s)	370, 371, 479, 480, 821, 886, 887, 996
BmrI	ACTGGG	1 cut(s)	525
BmsI	GCATC	8 cut(s)	84, 257, 366, 624, 675, 800, 904, 1310
BmuI	ACTGGG	1 cut(s)	525
BpiI	GAAGAC	1 cut(s)	536
Bpu14I	TTCGAA	1 cut(s)	805
BpuEI	CTTGAG	4 cut(s)	278, 329, 821, 845
BpuMI	CCSGG	7 cut(s)	370, 371, 479, 480, 886, 887, 996
BsaJI	CCNNGG	7 cut(s)	93, 306, 369, 478, 633, 820, 885
BsaWI	WCCGGW	1 cut(s)	1057
BsaXI	ACNNNNNCTCC	2 cut(s)	89, 119
Bsc4I	CCNNNNNNNGG	8 cut(s)	277, 437, 484, 485, 714, 820, 953, 1001
Bse1I	ACTGG	1 cut(s)	520
Bse3DI	GCAATG	1 cut(s)	732
BseAI	TCCGGA	1 cut(s)	1057
BseBI	CCWGG	1 cut(s)	821
BseDI	CCNNGG	7 cut(s)	93, 306, 369, 478, 633, 820, 885
BseGI	GGATG	4 cut(s)	1147, 1153, 1234, 1301
BseLI	CCNNNNNNNGG	8 cut(s)	277, 437, 484, 485, 714, 820, 953, 1001
BseMI	GCAATG	1 cut(s)	732
BseMII	CTCAG	4 cut(s)	44, 405, 921, 1286
BseNI	ACTGG	1 cut(s)	520
BseRI	GAGGAG	2 cut(s)	650, 1151
BseSI	GKGCMC	3 cut(s)	10, 544, 720
BseXI	GCAGC	3 cut(s)	70, 193, 610
BsgI	GTGCAG	2 cut(s)	417, 933
BshFI	GGCC	4 cut(s)	174, 311, 718, 1075
BsiHKAI	GWGCWC	1 cut(s)	10
BsiHKCI	CYCGRG	3 cut(s)	369, 478, 885
BsiSI	CCGG	7 cut(s)	230, 370, 479, 773, 886, 995, 1058
BslFI	GGGAC	3 cut(s)	352, 526, 868
BslI	CCNNNNNNNGG	8 cut(s)	277, 437, 484, 485, 714, 820, 953, 1001
BsmAI	GTCTC	1 cut(s)	1105
BsmFI	GGGAC	3 cut(s)	352, 526, 868
BsmI	GAATGC	1 cut(s)	184
BsnI	GGCC	4 cut(s)	174, 311, 718, 1075
BsoBI	CYCGRG	3 cut(s)	369, 478, 885
Bsp119I	TTCGAA	1 cut(s)	805
Bsp120I	GGGCCC	1 cut(s)	716
Bsp1286I	GDGCHC	3 cut(s)	10, 544, 720
Bsp13I	TCCGGA	1 cut(s)	1057
Bsp1407I	TGTACA	1 cut(s)	193
Bsp143I	GATC	4 cut(s)	161, 204, 549, 704
BspACI	CCGC	2 cut(s)	1005, 1240
BspANI	GGCC	4 cut(s)	174, 311, 718, 1075
BspCNI	CTCAG	4 cut(s)	45, 404, 920, 1287
BspEI	TCCGGA	1 cut(s)	1057
BspHI	TCATGA	1 cut(s)	670
BspLI	GGNNCC	4 cut(s)	163, 175, 706, 718
BspMI	ACCTGC	1 cut(s)	955
BspPI	GGATC	4 cut(s)	156, 169, 699, 712
BspQI	GCTCTTC	1 cut(s)	420
BspT104I	TTCGAA	1 cut(s)	805
BsrBI	CCGCTC	1 cut(s)	1240
BsrDI	GCAATG	1 cut(s)	732
BsrGI	TGTACA	1 cut(s)	193
BsrI	ACTGG	1 cut(s)	520
BssECI	CCNNGG	7 cut(s)	93, 306, 369, 478, 633, 820, 885
BssMI	GATC	4 cut(s)	161, 204, 549, 704
BssT1I	CCWWGG	1 cut(s)	93
Bst2UI	CCWGG	1 cut(s)	821
Bst6I	CTCTTC	5 cut(s)	420, 1009, 1056, 1188, 1254
BstAUI	TGTACA	1 cut(s)	193
BstBI	TTCGAA	1 cut(s)	805
BstC8I	GCNNGC	2 cut(s)	432, 1269
BstDEI	CTNAG	7 cut(s)	27, 53, 391, 593, 907, 1187, 1295
BstF5I	GGATG	4 cut(s)	1147, 1153, 1234, 1301
BstH2I	RGCGCY	1 cut(s)	1126
BstHHI	GCGC	2 cut(s)	739, 1125
BstKTI	GATC	4 cut(s)	164, 207, 552, 707
BstMAI	GTCTC	1 cut(s)	1105
BstMBI	GATC	4 cut(s)	161, 204, 549, 704
BstMWI	GCNNNNNNNGC	2 cut(s)	797, 1081
BstNI	CCWGG	1 cut(s)	821
BstSCI	CCNGG	8 cut(s)	368, 369, 477, 478, 819, 884, 885, 994
BstSLI	GKGCMC	3 cut(s)	10, 544, 720
BstV1I	GCAGC	3 cut(s)	70, 193, 610
BstV2I	GAAGAC	1 cut(s)	536
BstX2I	RGATCY	2 cut(s)	161, 704
BstXI	CCANNNNNNTGG	1 cut(s)	100
BstYI	RGATCY	2 cut(s)	161, 704
BsuI	GTATCC	2 cut(s)	489, 1002
BsuRI	GGCC	4 cut(s)	174, 311, 718, 1075
BtsCI	GGATG	4 cut(s)	1147, 1153, 1234, 1301
BveI	ACCTGC	1 cut(s)	955
Cac8I	GCNNGC	2 cut(s)	432, 1269
CciI	TCATGA	1 cut(s)	670
CfoI	GCGC	2 cut(s)	739, 1125
Cfr13I	GGNCC	3 cut(s)	173, 716, 717
Cfr9I	CCCGGG	3 cut(s)	369, 478, 885
Csp6I	GTAC	1 cut(s)	194
CviAII	CATG	4 cut(s)	89, 629, 671, 728
CviQI	GTAC	1 cut(s)	194
DdeI	CTNAG	7 cut(s)	27, 53, 391, 593, 907, 1187, 1295
DpnI	GATC	4 cut(s)	163, 206, 551, 706
DpnII	GATC	4 cut(s)	161, 204, 549, 704
DraIII	CACNNNGTG	1 cut(s)	14
EaeI	YGGCCR	1 cut(s)	309
Eam1104I	CTCTTC	5 cut(s)	420, 1009, 1056, 1188, 1254
EarI	CTCTTC	5 cut(s)	420, 1009, 1056, 1188, 1254
Eco130I	CCWWGG	1 cut(s)	93
Eco24I	GRGCYC	1 cut(s)	720
Eco47III	AGCGCT	1 cut(s)	1124
Eco88I	CYCGRG	3 cut(s)	369, 478, 885
EcoO109I	RGGNCCY	1 cut(s)	717
EcoRII	CCWGG	1 cut(s)	819
EcoT14I	CCWWGG	1 cut(s)	93
EcoT38I	GRGCYC	1 cut(s)	720
ErhI	CCWWGG	1 cut(s)	93
FaeI	CATG	4 cut(s)	92, 632, 674, 731
FaiI	YATR	6 cut(s)	90, 536, 630, 672, 729, 875
FalI	AAGNNNNNCTT	4 cut(s)	205, 237, 748, 780
FaqI	GGGAC	3 cut(s)	352, 526, 868
FatI	CATG	4 cut(s)	88, 628, 670, 727
FauI	CCCGC	1 cut(s)	998
FblI	GTMKAC	1 cut(s)	965
Fnu4HI	GCNGC	4 cut(s)	59, 182, 599, 1241
FokI	GGATG	4 cut(s)	1154, 1160, 1241, 1288
FriOI	GRGCYC	1 cut(s)	720
Fsp4HI	GCNGC	4 cut(s)	59, 182, 599, 1241
FspBI	CTAG	3 cut(s)	252, 795, 1272
FspI	TGCGCA	1 cut(s)	738
GlaI	GCGC	2 cut(s)	738, 1124
GluI	GCNGC	4 cut(s)	59, 182, 599, 1241
HaeII	RGCGCY	1 cut(s)	1126
HaeIII	GGCC	4 cut(s)	174, 311, 718, 1075
HapII	CCGG	7 cut(s)	230, 370, 479, 773, 886, 995, 1058
HhaI	GCGC	2 cut(s)	739, 1125
Hin1II	CATG	4 cut(s)	92, 632, 674, 731
Hin6I	GCGC	2 cut(s)	737, 1123
HinP1I	GCGC	2 cut(s)	737, 1123
HindIII	AAGCTT	2 cut(s)	414, 762
HinfI	GANTC	8 cut(s)	298, 365, 446, 667, 748, 841, 881, 1249
HpaII	CCGG	7 cut(s)	230, 370, 479, 773, 886, 995, 1058
Hpy166II	GTNNAC	3 cut(s)	8, 966, 1170
Hpy188I	TCNGA	8 cut(s)	80, 161, 394, 620, 704, 910, 927, 1280
Hpy188III	TCNNGA	7 cut(s)	295, 493, 656, 671, 752, 838, 1058
Hpy8I	GTNNAC	3 cut(s)	8, 966, 1170
Hpy99I	CGWCG	1 cut(s)	334
HpyAV	CCTTC	9 cut(s)	25, 175, 565, 718, 775, 1093, 1095, 1099, 1216
HpyCH4V	TGCA	3 cut(s)	8, 434, 950
HpyF10VI	GCNNNNNNNGC	2 cut(s)	797, 1081
HpyF3I	CTNAG	7 cut(s)	27, 53, 391, 593, 907, 1187, 1295
Hsp92II	CATG	4 cut(s)	92, 632, 674, 731
HspAI	GCGC	2 cut(s)	737, 1123
Kpn2I	TCCGGA	1 cut(s)	1057
Kzo9I	GATC	4 cut(s)	161, 204, 549, 704
LguI	GCTCTTC	1 cut(s)	420
Lsp1109I	GCAGC	3 cut(s)	70, 193, 610
LweI	GCATC	8 cut(s)	84, 257, 366, 624, 675, 800, 904, 1310
MaeI	CTAG	3 cut(s)	252, 795, 1272
MaeIII	GTNAC	4 cut(s)	113, 149, 656, 692
MalI	GATC	4 cut(s)	163, 206, 551, 706
MbiI	CCGCTC	1 cut(s)	1240
MboI	GATC	4 cut(s)	161, 204, 549, 704
MflI	RGATCY	2 cut(s)	161, 704
MhlI	GDGCHC	3 cut(s)	10, 544, 720
MluCI	AATT	6 cut(s)	35, 265, 575, 808, 921, 1212
MlyI	GAGTC	2 cut(s)	374, 890
MroI	TCCGGA	1 cut(s)	1057
MroXI	GAANNNNTTC	1 cut(s)	1018
MseI	TTAA	4 cut(s)	224, 236, 261, 767
MspI	CCGG	7 cut(s)	230, 370, 479, 773, 886, 995, 1058
MspR9I	CCNGG	8 cut(s)	370, 371, 479, 480, 821, 886, 887, 996
Mva1269I	GAATGC	1 cut(s)	184
MvaI	CCWGG	1 cut(s)	821
MwoI	GCNNNNNNNGC	2 cut(s)	797, 1081
NciI	CCSGG	7 cut(s)	370, 371, 479, 480, 886, 887, 996
NdeII	GATC	4 cut(s)	161, 204, 549, 704
NlaIII	CATG	4 cut(s)	92, 632, 674, 731
NlaIV	GGNNCC	4 cut(s)	163, 175, 706, 718
NmeAIII	GCCGAG	3 cut(s)	287, 486, 658
NmuCI	GTSAC	4 cut(s)	113, 149, 656, 692
NsbI	TGCGCA	1 cut(s)	738
NspV	TTCGAA	1 cut(s)	805
PagI	TCATGA	1 cut(s)	670
PciSI	GCTCTTC	1 cut(s)	420
PctI	GAATGC	1 cut(s)	184
PdmI	GAANNNNTTC	1 cut(s)	1018
PfeI	GAWTC	6 cut(s)	298, 446, 667, 748, 841, 1249
PkrI	GCNGC	4 cut(s)	60, 183, 600, 1242
PleI	GAGTC	2 cut(s)	373, 889
PpsI	GAGTC	2 cut(s)	373, 889
Psp6I	CCWGG	1 cut(s)	819
PspGI	CCWGG	1 cut(s)	819
PspN4I	GGNNCC	4 cut(s)	163, 175, 706, 718
PspOMI	GGGCCC	1 cut(s)	716
PspPI	GGNCC	3 cut(s)	173, 716, 717
PsuI	RGATCY	2 cut(s)	161, 704
RsaI	GTAC	1 cut(s)	195
RsaNI	GTAC	1 cut(s)	194
SapI	GCTCTTC	1 cut(s)	420
SaqAI	TTAA	4 cut(s)	224, 236, 261, 767
SatI	GCNGC	4 cut(s)	59, 182, 599, 1241
Sau3AI	GATC	4 cut(s)	161, 204, 549, 704
Sau96I	GGNCC	3 cut(s)	173, 716, 717
SchI	GAGTC	2 cut(s)	374, 890
ScrFI	CCNGG	8 cut(s)	370, 371, 479, 480, 821, 886, 887, 996
SduI	GDGCHC	3 cut(s)	10, 544, 720
SfaNI	GCATC	8 cut(s)	84, 257, 366, 624, 675, 800, 904, 1310
SfuI	TTCGAA	1 cut(s)	805
SmaI	CCCGGG	3 cut(s)	371, 480, 887
SmlI	CTYRAG	4 cut(s)	293, 344, 836, 860
SmoI	CTYRAG	4 cut(s)	293, 344, 836, 860
Sse9I	AATT	6 cut(s)	35, 265, 575, 808, 921, 1212
SsiI	CCGC	2 cut(s)	1005, 1240
SspMI	CTAG	3 cut(s)	252, 795, 1272
StyD4I	CCNGG	8 cut(s)	368, 369, 477, 478, 819, 884, 885, 994
StyI	CCWWGG	1 cut(s)	93
TaqI	TCGA	6 cut(s)	122, 207, 329, 665, 805, 849
TasI	AATT	6 cut(s)	35, 265, 575, 808, 921, 1212
TatI	WGTACW	1 cut(s)	193
TauI	GCSGC	1 cut(s)	1243
TfiI	GAWTC	6 cut(s)	298, 446, 667, 748, 841, 1249
Tru1I	TTAA	4 cut(s)	224, 236, 261, 767
Tru9I	TTAA	4 cut(s)	224, 236, 261, 767
TseFI	GTSAC	4 cut(s)	113, 149, 656, 692
TseI	GCWGC	3 cut(s)	58, 181, 598
Tsp45I	GTSAC	4 cut(s)	113, 149, 656, 692
TspDTI	ATGAA	3 cut(s)	659, 1112, 1245
TspGWI	ACGGA	2 cut(s)	347, 545
TspMI	CCCGGG	3 cut(s)	369, 478, 885
VneI	GTGCAC	1 cut(s)	6
XapI	RAATTY	3 cut(s)	265, 808, 921
XmaI	CCCGGG	3 cut(s)	369, 478, 885
XmiI	GTMKAC	1 cut(s)	965
XmnI	GAANNNNTTC	1 cut(s)	1018
XspI	CTAG	3 cut(s)	252, 795, 1272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.