Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0004232

Physical Location & Seq

Genomic Coordinates Forward (+)

29240426 .. 29242880

Gene Structure 2455 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G308100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGGGAGCACTCAGTGACGAATTGGACTTTCTTCAACTAAGGCAACAACTGAAACAACGCATCAGAAACAATCACATGAAGGAATTGGGTTATGCTCCTGAATCCTCGGTTAATAAGAACAAATTACTTTCCGACGATTTTGGATCTTTCTTTGGCCCATCGCAATCCGTTATTGCGCAAAGAGTGATTGAAGAAAGCAAAGCATTCATGCCAGAGTTGAGGAATTTGGCATCTAAGTTCGGAAATTCCCATGATAAGGGTAAGAAGAAGCTAAAGAGCCCTGTCTTAAGCACGACCAACGCAAAGTCTGGTTTGAGATGTAAAAACCTTAAGGAGTCCCGGGATTATTCCTTCTTACTATCGGACAATGCAGAAATTCCTTCAACTTCAGAAGGAGGAGAGCCCCGACTTGTGAAAAATTCTCTCTCCAATTCAAGCAATAAAAGAAATCCGGTTTCTGCTATACACAGAGCTTCTTCGACGAATTTGAAATCCGTAAAGAGGCAACATTTGGAAGAGAAAGTTCAGTCACTGCCTGCAACAAGAAAAAAATTGGAAGAATCAAAGAAATTGCATCCACCTAAGAAAGCAAAACTGATGGCAGACAGTTGCAAAACAGCCTTGAAAACATCACAATCTTCAACAAAGCCGAACATAAAACAAGCAAAGCATTGTCTTGAGCCCGAGAACACAAAAGTAAAGCCAGAACAGAAAAGCTCTTCCTTGAAAAGATCACAATCTTCAACAAAGCAAAACATAAAACCAGCAAAGCAATGTGTTGAGCCCGAGAACACAAAAGTGACGCCAAAACAGAAAAGCTCTTTCTTAAAAAATCAGACCAAACGCCATTTGGAGGATAGTTATGATGATGACAATCTTGACATTTCCTCTGTGATCAAAATGTTTGGACCTAAACGCAAACACAGAGAAGATGATGACGACGACGATGGCTGTGCCATGGTCTCCAGCTTTGCTGATATTATGAGAGAAGAGAGGAAGAGTGCAAAAATTGCTAGGAAGGAGGATGAAATAGAGCGTCTCCGGCTTGAAGAAGAAGAGAAGGAGGAGAGATTAAGAAAAGCAAAGCAGCAGAAGCCGCGAGAGATTAAGAAAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SPT2

Protein Analysis

373

Amino Acids

42.3

Weight (kDa)

9.71

Isoelectric Point (pI)

63.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004232)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g35540 FvH4_6g05810
prunus_persica	Prupe.1G068500_v2.0.a1 Prupe.2G308100_v2.0.a1
pyrus_communis	pycom01g22690 pycom05g13400
rosa_laevigata	RLG00000005759 RLG00000025421
rosa_multiflora	Rmu_co8287015.1_g000001 Rmu_sc0000050.1_g000036 Rmu_sc0001792.1_g000022 Rmu_sc0003140.1_g000017
rosa_roxburghii	Rroxscaffold_5G00385700 Rroxscaffold_6G00424820
rosa_rugosa	Rorug03G0001600 Rorug03G0001900 Rorug03G0001900 Rorug04G0359700
rosa_samantha	Rh3AG061500 Rh3AG061900 Rh3BG063300 Rh3BG063700 Rh3CG062200 Rh3CG062600 Rh3DG063200 Rh3DG063300 Rh3DG063400 Rh4AG420600 Rh4BG432500 Rh4CG447100 Rh4DG428600
rosa_wichuraiana	Rw3G004810 Rw4G036070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	177
AccII	CGCG	1 cut(s)	1099
AciI	CCGC	1 cut(s)	1097
AclWI	GGATC	1 cut(s)	151
AcsI	RAATTY	5 cut(s)	223, 244, 375, 418, 484
AcuI	CTGAAG	1 cut(s)	372
AcyI	GRCGYC	1 cut(s)	803
AdeI	CACNNNGTG	1 cut(s)	14
AfiI	CCNNNNNNNGG	3 cut(s)	256, 501, 853
AflII	CTTAAG	2 cut(s)	286, 329
AleI	CACNNNNGTG	1 cut(s)	797
AluBI	AGCT	5 cut(s)	271, 473, 717, 819, 969
AluI	AGCT	5 cut(s)	271, 473, 717, 819, 969
Alw21I	GWGCWC	1 cut(s)	10
Alw26I	GTCTC	2 cut(s)	967, 1043
AlwI	GGATC	1 cut(s)	151
AlwNI	CAGNNNCTG	1 cut(s)	532
Ama87I	CYCGRG	3 cut(s)	339, 683, 785
AoxI	GGCC	1 cut(s)	154
ApeKI	GCWGC	1 cut(s)	1087
ApoI	RAATTY	5 cut(s)	223, 244, 375, 418, 484
AspLEI	GCGC	1 cut(s)	178
AspS9I	GGNCC	2 cut(s)	155, 908
AsuC2I	CCSGG	2 cut(s)	340, 341
AvaI	CYCGRG	3 cut(s)	339, 683, 785
AvaII	GGWCC	1 cut(s)	908
BanII	GRGCYC	4 cut(s)	281, 405, 684, 786
Bbv12I	GWGCWC	1 cut(s)	10
BbvI	GCAGC	1 cut(s)	1099
BccI	CCATC	3 cut(s)	166, 592, 941
BcgI	CGANNNNNNTGC	2 cut(s)	935, 969
BclI	TGATCA	1 cut(s)	894
BcnI	CCSGG	2 cut(s)	340, 341
BcoDI	GTCTC	2 cut(s)	967, 1043
BfaI	CTAG	1 cut(s)	1014
BfrI	CTTAAG	2 cut(s)	286, 329
BisI	GCNGC	2 cut(s)	1088, 1097
BlsI	GCNGC	2 cut(s)	1089, 1098
Bme1390I	CCNGG	2 cut(s)	340, 341
Bme18I	GGWCC	1 cut(s)	908
BmeT110I	CYCGRG	3 cut(s)	339, 683, 785
BmgT120I	GGNCC	2 cut(s)	155, 908
BmrFI	CCNGG	2 cut(s)	340, 341
BmsI	GCATC	3 cut(s)	69, 239, 583
BpmI	CTGGAG	1 cut(s)	949
BpuEI	CTTGAG	1 cut(s)	698
BpuMI	CCSGG	2 cut(s)	340, 341
BsaBI	GATNNNNATC	2 cut(s)	736, 873
BsaHI	GRCGYC	1 cut(s)	803
BsaI	GGTCTC	1 cut(s)	967
BsaJI	CCNNGG	3 cut(s)	105, 339, 957
BsaWI	WCCGGW	1 cut(s)	451
Bsc4I	CCNNNNNNNGG	3 cut(s)	256, 501, 853
Bse3DI	GCAATG	1 cut(s)	779
Bse8I	GATNNNNATC	2 cut(s)	736, 873
BseDI	CCNNGG	3 cut(s)	105, 339, 957
BseGI	GGATG	2 cut(s)	574, 1030
BseJI	GATNNNNATC	2 cut(s)	736, 873
BseLI	CCNNNNNNNGG	3 cut(s)	256, 501, 853
BseMI	GCAATG	1 cut(s)	779
BseMII	CTCAG	1 cut(s)	25
BseRI	GAGGAG	2 cut(s)	411, 1079
BseXI	GCAGC	1 cut(s)	1099
Bsh1236I	CGCG	1 cut(s)	1099
BshFI	GGCC	1 cut(s)	156
BsiHKAI	GWGCWC	1 cut(s)	10
BsiHKCI	CYCGRG	3 cut(s)	339, 683, 785
BsiSI	CCGG	3 cut(s)	340, 452, 1042
BslFI	GGGAC	1 cut(s)	322
BslI	CCNNNNNNNGG	3 cut(s)	256, 501, 853
BsmAI	GTCTC	2 cut(s)	967, 1043
BsmBI	CGTCTC	1 cut(s)	1043
BsmFI	GGGAC	1 cut(s)	322
BsmI	GAATGC	1 cut(s)	203
BsnI	GGCC	1 cut(s)	156
Bso31I	GGTCTC	1 cut(s)	967
BsoBI	CYCGRG	3 cut(s)	339, 683, 785
Bsp1286I	GDGCHC	5 cut(s)	10, 281, 405, 684, 786
Bsp143I	GATC	3 cut(s)	143, 731, 894
Bsp19I	CCATGG	1 cut(s)	957
BspACI	CCGC	1 cut(s)	1097
BspANI	GGCC	1 cut(s)	156
BspCNI	CTCAG	1 cut(s)	24
BspFNI	CGCG	1 cut(s)	1099
BspPI	GGATC	1 cut(s)	151
BspQI	GCTCTTC	1 cut(s)	724
BspTI	CTTAAG	2 cut(s)	286, 329
BspTNI	GGTCTC	1 cut(s)	967
BsrDI	GCAATG	1 cut(s)	779
BssECI	CCNNGG	3 cut(s)	105, 339, 957
BssMI	GATC	3 cut(s)	143, 731, 894
BssNI	GRCGYC	1 cut(s)	803
BssT1I	CCWWGG	1 cut(s)	957
Bst4CI	ACNGT	1 cut(s)	608
Bst6I	CTCTTC	5 cut(s)	510, 724, 984, 992, 1050
BstACI	GRCGYC	1 cut(s)	803
BstAFI	CTTAAG	2 cut(s)	286, 329
BstAPI	GCANNNNNTGC	1 cut(s)	1010
BstC8I	GCNNGC	1 cut(s)	537
BstDEI	CTNAG	4 cut(s)	11, 38, 234, 582
BstDSI	CCRYGG	1 cut(s)	957
BstF5I	GGATG	2 cut(s)	574, 1030
BstFNI	CGCG	1 cut(s)	1099
BstHHI	GCGC	1 cut(s)	178
BstKTI	GATC	3 cut(s)	146, 734, 897
BstMAI	GTCTC	2 cut(s)	967, 1043
BstMBI	GATC	3 cut(s)	143, 731, 894
BstMWI	GCNNNNNNNGC	4 cut(s)	1010, 1042, 1093, 1096
BstSCI	CCNGG	2 cut(s)	338, 339
BstUI	CGCG	1 cut(s)	1099
BstV1I	GCAGC	1 cut(s)	1099
BstX2I	RGATCY	1 cut(s)	143
BstYI	RGATCY	1 cut(s)	143
BsuRI	GGCC	1 cut(s)	156
BtgI	CCRYGG	1 cut(s)	957
BtgZI	GCGATG	1 cut(s)	144
BtsCI	GGATG	2 cut(s)	574, 1030
BtsI	GCAGTG	1 cut(s)	530
BtsIMutI	CAGTG	2 cut(s)	19, 530
Cac8I	GCNNGC	1 cut(s)	537
CaiI	CAGNNNCTG	1 cut(s)	532
CfoI	GCGC	1 cut(s)	178
Cfr13I	GGNCC	2 cut(s)	155, 908
Cfr9I	CCCGGG	1 cut(s)	339
CseI	GACGC	2 cut(s)	811, 1025
CviAII	CATG	4 cut(s)	76, 208, 251, 958
DdeI	CTNAG	4 cut(s)	11, 38, 234, 582
DpnI	GATC	3 cut(s)	145, 733, 896
DpnII	GATC	3 cut(s)	143, 731, 894
DraIII	CACNNNGTG	1 cut(s)	14
Eam1104I	CTCTTC	5 cut(s)	510, 724, 984, 992, 1050
EarI	CTCTTC	5 cut(s)	510, 724, 984, 992, 1050
Eco130I	CCWWGG	1 cut(s)	957
Eco24I	GRGCYC	4 cut(s)	281, 405, 684, 786
Eco31I	GGTCTC	1 cut(s)	967
Eco47I	GGWCC	1 cut(s)	908
Eco57I	CTGAAG	1 cut(s)	372
Eco88I	CYCGRG	3 cut(s)	339, 683, 785
EcoT14I	CCWWGG	1 cut(s)	957
EcoT38I	GRGCYC	4 cut(s)	281, 405, 684, 786
ErhI	CCWWGG	1 cut(s)	957
Esp3I	CGTCTC	1 cut(s)	1043
FaeI	CATG	4 cut(s)	79, 211, 254, 961
FaqI	GGGAC	1 cut(s)	322
FatI	CATG	4 cut(s)	75, 207, 250, 957
FbaI	TGATCA	1 cut(s)	894
Fnu4HI	GCNGC	2 cut(s)	1088, 1097
FokI	GGATG	2 cut(s)	561, 1037
FriOI	GRGCYC	4 cut(s)	281, 405, 684, 786
Fsp4HI	GCNGC	2 cut(s)	1088, 1097
FspBI	CTAG	1 cut(s)	1014
FspI	TGCGCA	1 cut(s)	177
GlaI	GCGC	1 cut(s)	177
GluI	GCNGC	2 cut(s)	1088, 1097
GsuI	CTGGAG	1 cut(s)	949
HaeIII	GGCC	1 cut(s)	156
HapII	CCGG	3 cut(s)	340, 452, 1042
HgaI	GACGC	2 cut(s)	811, 1025
HhaI	GCGC	1 cut(s)	178
Hin1I	GRCGYC	1 cut(s)	803
Hin1II	CATG	4 cut(s)	79, 211, 254, 961
Hin6I	GCGC	1 cut(s)	176
HinP1I	GCGC	1 cut(s)	176
HinfI	GANTC	3 cut(s)	101, 335, 560
HpaII	CCGG	3 cut(s)	340, 452, 1042
Hpy188I	TCNGA	6 cut(s)	65, 133, 242, 364, 391, 837
Hpy188III	TCNNGA	3 cut(s)	98, 677, 878
Hpy99I	CGWCG	4 cut(s)	137, 484, 944, 947
HpyAV	CCTTC	6 cut(s)	73, 361, 386, 390, 1012, 1054
HpyCH4III	ACNGT	1 cut(s)	608
HpyCH4V	TGCA	5 cut(s)	371, 539, 574, 612, 1004
HpyF10VI	GCNNNNNNNGC	4 cut(s)	1010, 1042, 1093, 1096
HpyF3I	CTNAG	4 cut(s)	11, 38, 234, 582
Hsp92I	GRCGYC	1 cut(s)	803
Hsp92II	CATG	4 cut(s)	79, 211, 254, 961
HspAI	GCGC	1 cut(s)	176
Ksp22I	TGATCA	1 cut(s)	894
Kzo9I	GATC	3 cut(s)	143, 731, 894
LguI	GCTCTTC	1 cut(s)	724
LmnI	GCTCC	2 cut(s)	5, 100
Lsp1109I	GCAGC	1 cut(s)	1099
LweI	GCATC	3 cut(s)	69, 239, 583
MaeI	CTAG	1 cut(s)	1014
MaeIII	GTNAC	3 cut(s)	14, 528, 799
MalI	GATC	3 cut(s)	145, 733, 896
MboI	GATC	3 cut(s)	143, 731, 894
MflI	RGATCY	1 cut(s)	143
MhlI	GDGCHC	5 cut(s)	10, 281, 405, 684, 786
MlyI	GAGTC	1 cut(s)	344
MmeI	TCCRAC	1 cut(s)	156
MnlI	CCTC	9 cut(s)	115, 213, 389, 495, 847, 898, 987, 1015, 1057
MseI	TTAA	6 cut(s)	111, 287, 330, 827, 1073, 1107
MslI	CAYNNNNRTG	1 cut(s)	797
MspCI	CTTAAG	2 cut(s)	286, 329
MspI	CCGG	3 cut(s)	340, 452, 1042
MspR9I	CCNGG	2 cut(s)	340, 341
Mva1269I	GAATGC	1 cut(s)	203
MvnI	CGCG	1 cut(s)	1099
MwoI	GCNNNNNNNGC	4 cut(s)	1010, 1042, 1093, 1096
NciI	CCSGG	2 cut(s)	340, 341
NcoI	CCATGG	1 cut(s)	957
NdeII	GATC	3 cut(s)	143, 731, 894
NlaIII	CATG	4 cut(s)	79, 211, 254, 961
NmuCI	GTSAC	3 cut(s)	14, 528, 799
NsbI	TGCGCA	1 cut(s)	177
OliI	CACNNNNGTG	1 cut(s)	797
PciSI	GCTCTTC	1 cut(s)	724
PctI	GAATGC	1 cut(s)	203
PfeI	GAWTC	2 cut(s)	101, 560
PkrI	GCNGC	2 cut(s)	1089, 1098
PleI	GAGTC	1 cut(s)	343
PpsI	GAGTC	1 cut(s)	343
PspPI	GGNCC	2 cut(s)	155, 908
PstNI	CAGNNNCTG	1 cut(s)	532
PsuI	RGATCY	1 cut(s)	143
RseI	CAYNNNNRTG	1 cut(s)	797
SapI	GCTCTTC	1 cut(s)	724
SaqAI	TTAA	6 cut(s)	111, 287, 330, 827, 1073, 1107
SatI	GCNGC	2 cut(s)	1088, 1097
Sau3AI	GATC	3 cut(s)	143, 731, 894
Sau96I	GGNCC	2 cut(s)	155, 908
SchI	GAGTC	1 cut(s)	344
ScrFI	CCNGG	2 cut(s)	340, 341
SduI	GDGCHC	5 cut(s)	10, 281, 405, 684, 786
SetI	ASST	8 cut(s)	273, 330, 475, 583, 719, 821, 913, 971
SfaNI	GCATC	3 cut(s)	69, 239, 583
SinI	GGWCC	1 cut(s)	908
SmaI	CCCGGG	1 cut(s)	341
SmiMI	CAYNNNNRTG	1 cut(s)	797
SmlI	CTYRAG	3 cut(s)	286, 329, 677
SmoI	CTYRAG	3 cut(s)	286, 329, 677
SsiI	CCGC	1 cut(s)	1097
SspMI	CTAG	1 cut(s)	1014
StyD4I	CCNGG	2 cut(s)	338, 339
StyI	CCWWGG	1 cut(s)	957
TaaI	ACNGT	1 cut(s)	608
TaqI	TCGA	1 cut(s)	479
TauI	GCSGC	1 cut(s)	1099
TfiI	GAWTC	2 cut(s)	101, 560
Tru1I	TTAA	6 cut(s)	111, 287, 330, 827, 1073, 1107
Tru9I	TTAA	6 cut(s)	111, 287, 330, 827, 1073, 1107
TscAI	CASTG	2 cut(s)	19, 537
TseFI	GTSAC	3 cut(s)	14, 528, 799
TseI	GCWGC	1 cut(s)	1087
Tsp45I	GTSAC	3 cut(s)	14, 528, 799
TspDTI	ATGAA	3 cut(s)	92, 196, 1041
TspGWI	ACGGA	2 cut(s)	157, 484
TspMI	CCCGGG	1 cut(s)	339
TspRI	CASTG	2 cut(s)	19, 537
Vha464I	CTTAAG	2 cut(s)	286, 329
VpaK11BI	GGWCC	1 cut(s)	908
XapI	RAATTY	5 cut(s)	223, 244, 375, 418, 484
XcmI	CCANNNNNNNNNTGG	1 cut(s)	847
XmaI	CCCGGG	1 cut(s)	339
XspI	CTAG	1 cut(s)	1014

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.