Rh3DG063400

Protein SPT2 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0004232
Physical Location & Seq
Reverse (-)
4216351 .. 4217533
1183 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG063400.1

Sequence Viewer

Length: 978 bp
ATGTCGATGACGACGATTGGTGTTGCAGGTAACATGGGTATTCCTGAACTCCGGCAAATTCTGAAAGAGCGATACAGAATTGCTAATAACATGAAAAGCTGCTCGGCTGAGATGAAAGAGACCAAGAACTCATCCTTGTTTGGATCCTTGGAGTACTCTCTTTCACAAAGACTGATCGACGAGAGTAAAGCTCTTATGCCGGAGATGATCAATATTCTGGATAAGATGAACAACAATGATCATCAAAAGCCAACAAAAGCGACAAAGCAAAATTCCGGCGTGGATTTGAAGCTTCAGCGAGCTAAAAAGGTTAAGGAATCGCGTGATTACTCTTTCTTGTTATCAGAGACTTCAGAAGTTCCGAAGATTTCAAAAGCGTCACCACCAAAGTCTATTCCTAAAGCTGATGGGAATGGGATCCCAAAGAAGAGTCATGATAAGGTGTCTTCTTTGAAACCAAAGAAGAGTGGTGATGATAACAAGTCCAAAGTCTCCCAGGCAAAGTCAGAGTCCGTTTCGAAAGATTCAGTTCTGGTTTCTGGTTCAGAGAGTTTGAAGTCTCGGCCTAGTGAGAACATGGTGACAAAGTCACAATTTTCATCTGCAAAGCAAACCTTGAACCCGAAACAAGCAGAGCTCAGTAACACAAAAGTGATGCCGAAAAAGGAAGGTCTTTGCTTGAAGAAAAAAATGATCAAGAAACGCCGAGTGGAAGAGGATTTGGGGGATGATGGCAATGTAGACTTTTCTTCACTAATCCAAGATATTATGGGGAGAAGAGGAAAGCGGCGATACAGGGATTATGGTGACGACGGCGATGATCGTGCTATGGTGTCTGGCTTTAATGATATTCTGAAAGAAGAGAGGAGGAGTGCAGAGATTGCGAGGAAGGAGGATGCAATAGAGGCTCTAAGGCTTGAGCAAGAAGCCAAAGAAGAGAGGTTGACCAAAGCAAAGAAGCAGAAGTTGAAGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SPT2

Protein Analysis

325

Amino Acids

36.45

Weight (kDa)

9.68

Isoelectric Point (pI)

49.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SPT2 PF08243 238 - 317 3.8e-13 SPT2 chromatin protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 17
AccI GTMKAC 1 cut(s) 741
AccII CGCG 1 cut(s) 322
AciI CCGC 1 cut(s) 787
AclWI GGATC 4 cut(s) 138, 151, 412, 425
AcsI RAATTY 2 cut(s) 57, 271
AcuI CTGAAG 2 cut(s) 278, 336
AfaI GTAC 1 cut(s) 155
AgsI TTSAA 7 cut(s) 289, 372, 454, 556, 619, 682, 970
AjnI CCWGG 1 cut(s) 495
AleI CACNNNNGTG 1 cut(s) 650
AluBI AGCT 6 cut(s) 99, 191, 292, 302, 404, 637
AluI AGCT 6 cut(s) 99, 191, 292, 302, 404, 637
Alw21I GWGCWC 1 cut(s) 639
Alw26I GTCTC 4 cut(s) 113, 341, 496, 564
AlwI GGATC 4 cut(s) 138, 151, 412, 425
AoxI GGCC 1 cut(s) 563
ApeKI GCWGC 1 cut(s) 99
ApoI RAATTY 2 cut(s) 57, 271
ArsI GACNNNNNNTTYG 2 cut(s) 494, 526
AsuHPI GGTGA 4 cut(s) 372, 482, 592, 818
AsuII TTCGAA 1 cut(s) 518
BamHI GGATCC 2 cut(s) 143, 417
BanII GRGCYC 1 cut(s) 639
BbsI GAAGAC 1 cut(s) 438
Bbv12I GWGCWC 1 cut(s) 639
BbvI GCAGC 1 cut(s) 86
BccI CCATC 2 cut(s) 401, 725
BceAI ACGGC 1 cut(s) 829
BcgI CGANNNNNNTGC 2 cut(s) 806, 840
BciT130I CCWGG 1 cut(s) 497
BclI TGATCA 3 cut(s) 207, 238, 693
BcoDI GTCTC 4 cut(s) 113, 341, 496, 564
BfaI CTAG 1 cut(s) 567
BfuAI ACCTGC 1 cut(s) 17
BisI GCNGC 2 cut(s) 100, 788
BlsI GCNGC 2 cut(s) 101, 789
BmcAI AGTACT 1 cut(s) 155
Bme1390I CCNGG 1 cut(s) 497
BmiI GGNNCC 2 cut(s) 145, 419
BmrFI CCNGG 1 cut(s) 497
BmsI GCATC 2 cut(s) 645, 886
BpiI GAAGAC 1 cut(s) 438
BplI GAGNNNNNCTC 2 cut(s) 175, 207
Bpu14I TTCGAA 1 cut(s) 518
BpuEI CTTGAG 1 cut(s) 938
BsaI GGTCTC 1 cut(s) 113
BsaJI CCNNGG 2 cut(s) 147, 495
Bse3DI GCAATG 1 cut(s) 742
BseBI CCWGG 1 cut(s) 497
BseDI CCNNGG 2 cut(s) 147, 495
BseGI GGATG 3 cut(s) 131, 733, 901
BseMI GCAATG 1 cut(s) 742
BseMII CTCAG 2 cut(s) 99, 652
BseRI GAGGAG 2 cut(s) 880, 883
BseXI GCAGC 1 cut(s) 86
BsgI GTGCAG 1 cut(s) 894
Bsh1236I CGCG 1 cut(s) 322
BshFI GGCC 1 cut(s) 565
BsiHKAI GWGCWC 1 cut(s) 639
BsiSI CCGG 3 cut(s) 52, 200, 276
BsmAI GTCTC 4 cut(s) 113, 341, 496, 564
BsnI GGCC 1 cut(s) 565
Bso31I GGTCTC 1 cut(s) 113
Bsp119I TTCGAA 1 cut(s) 518
Bsp1286I GDGCHC 1 cut(s) 639
Bsp143I GATC 7 cut(s) 143, 174, 207, 238, 417, 693, 820
BspACI CCGC 1 cut(s) 787
BspANI GGCC 1 cut(s) 565
BspCNI CTCAG 2 cut(s) 100, 651
BspFNI CGCG 1 cut(s) 322
BspHI TCATGA 1 cut(s) 433
BspLI GGNNCC 2 cut(s) 145, 419
BspMI ACCTGC 1 cut(s) 17
BspPI GGATC 4 cut(s) 138, 151, 412, 425
BspT104I TTCGAA 1 cut(s) 518
BspTNI GGTCTC 1 cut(s) 113
BsrDI GCAATG 1 cut(s) 742
BssECI CCNNGG 2 cut(s) 147, 495
BssMI GATC 7 cut(s) 143, 174, 207, 238, 417, 693, 820
BssT1I CCWWGG 1 cut(s) 147
Bst2UI CCWGG 1 cut(s) 497
Bst6I CTCTTC 6 cut(s) 422, 458, 708, 772, 855, 930
BstAPI GCANNNNNTGC 1 cut(s) 881
BstBI TTCGAA 1 cut(s) 518
BstC8I GCNNGC 1 cut(s) 300
BstDEI CTNAG 3 cut(s) 108, 638, 911
BstF5I GGATG 3 cut(s) 131, 733, 901
BstFNI CGCG 1 cut(s) 322
BstKTI GATC 7 cut(s) 146, 177, 210, 241, 420, 696, 823
BstMAI GTCTC 4 cut(s) 113, 341, 496, 564
BstMBI GATC 7 cut(s) 143, 174, 207, 238, 417, 693, 820
BstMWI GCNNNNNNNGC 2 cut(s) 881, 905
BstNI CCWGG 1 cut(s) 497
BstSCI CCNGG 1 cut(s) 495
BstUI CGCG 1 cut(s) 322
BstV1I GCAGC 1 cut(s) 86
BstV2I GAAGAC 1 cut(s) 438
BstX2I RGATCY 2 cut(s) 143, 417
BstYI RGATCY 2 cut(s) 143, 417
BsuRI GGCC 1 cut(s) 565
BtgZI GCGATG 1 cut(s) 831
BtsCI GGATG 3 cut(s) 131, 733, 901
BveI ACCTGC 1 cut(s) 17
Cac8I GCNNGC 1 cut(s) 300
CciI TCATGA 1 cut(s) 433
CseI GACGC 1 cut(s) 366
Csp6I GTAC 1 cut(s) 154
CviAII CATG 4 cut(s) 34, 91, 434, 577
CviQI GTAC 1 cut(s) 154
DdeI CTNAG 3 cut(s) 108, 638, 911
DpnI GATC 7 cut(s) 145, 176, 209, 240, 419, 695, 822
DpnII GATC 7 cut(s) 143, 174, 207, 238, 417, 693, 820
Eam1104I CTCTTC 6 cut(s) 422, 458, 708, 772, 855, 930
EarI CTCTTC 6 cut(s) 422, 458, 708, 772, 855, 930
Ecl136II GAGCTC 1 cut(s) 637
Eco130I CCWWGG 1 cut(s) 147
Eco24I GRGCYC 1 cut(s) 639
Eco31I GGTCTC 1 cut(s) 113
Eco53kI GAGCTC 1 cut(s) 637
Eco57I CTGAAG 2 cut(s) 278, 336
EcoICRI GAGCTC 1 cut(s) 637
EcoRII CCWGG 1 cut(s) 495
EcoT14I CCWWGG 1 cut(s) 147
EcoT38I GRGCYC 1 cut(s) 639
ErhI CCWWGG 1 cut(s) 147
FaeI CATG 4 cut(s) 37, 94, 437, 580
FaiI YATR 8 cut(s) 35, 92, 197, 435, 578, 770, 804, 830
FalI AAGNNNNNCTT 2 cut(s) 599, 631
FatI CATG 4 cut(s) 33, 90, 433, 576
FbaI TGATCA 3 cut(s) 207, 238, 693
FblI GTMKAC 1 cut(s) 741
Fnu4HI GCNGC 2 cut(s) 100, 788
FokI GGATG 3 cut(s) 118, 740, 908
FriOI GRGCYC 1 cut(s) 639
Fsp4HI GCNGC 2 cut(s) 100, 788
FspBI CTAG 1 cut(s) 567
GluI GCNGC 2 cut(s) 100, 788
HaeIII GGCC 1 cut(s) 565
HapII CCGG 3 cut(s) 52, 200, 276
HgaI GACGC 1 cut(s) 366
Hin1II CATG 4 cut(s) 37, 94, 437, 580
HincII GTYRAC 1 cut(s) 945
HindII GTYRAC 1 cut(s) 945
HindIII AAGCTT 1 cut(s) 290
HinfI GANTC 4 cut(s) 317, 430, 509, 524
HpaII CCGG 3 cut(s) 52, 200, 276
HphI GGTGA 4 cut(s) 372, 482, 592, 818
Hpy166II GTNNAC 2 cut(s) 742, 945
Hpy188I TCNGA 7 cut(s) 63, 346, 355, 363, 508, 547, 855
Hpy188III TCNNGA 4 cut(s) 44, 218, 434, 697
Hpy8I GTNNAC 2 cut(s) 742, 945
Hpy99I CGWCG 3 cut(s) 16, 182, 815
HpyAV CCTTC 2 cut(s) 662, 883
HpyCH4V TGCA 4 cut(s) 26, 605, 875, 899
HpyF10VI GCNNNNNNNGC 2 cut(s) 881, 905
HpyF3I CTNAG 3 cut(s) 108, 638, 911
Hsp92II CATG 4 cut(s) 37, 94, 437, 580
Ksp22I TGATCA 3 cut(s) 207, 238, 693
Kzo9I GATC 7 cut(s) 143, 174, 207, 238, 417, 693, 820
Lsp1109I GCAGC 1 cut(s) 86
LweI GCATC 2 cut(s) 645, 886
MaeI CTAG 1 cut(s) 567
MaeIII GTNAC 6 cut(s) 29, 378, 580, 588, 641, 806
MalI GATC 7 cut(s) 145, 176, 209, 240, 419, 695, 822
MboI GATC 7 cut(s) 143, 174, 207, 238, 417, 693, 820
MflI RGATCY 2 cut(s) 143, 417
MhlI GDGCHC 1 cut(s) 639
MluCI AATT 5 cut(s) 57, 78, 271, 593, 973
MlyI GAGTC 2 cut(s) 439, 518
MnlI CCTC 8 cut(s) 709, 773, 858, 861, 879, 886, 898, 933
MseI TTAA 2 cut(s) 312, 843
MslI CAYNNNNRTG 1 cut(s) 650
MspI CCGG 3 cut(s) 52, 200, 276
MspR9I CCNGG 1 cut(s) 497
MvaI CCWGG 1 cut(s) 497
MvnI CGCG 1 cut(s) 322
MwoI GCNNNNNNNGC 2 cut(s) 881, 905
NdeII GATC 7 cut(s) 143, 174, 207, 238, 417, 693, 820
NlaIII CATG 4 cut(s) 37, 94, 437, 580
NlaIV GGNNCC 2 cut(s) 145, 419
NmeAIII GCCGAG 3 cut(s) 83, 541, 731
NmuCI GTSAC 4 cut(s) 378, 580, 588, 806
NspV TTCGAA 1 cut(s) 518
OliI CACNNNNGTG 1 cut(s) 650
PagI TCATGA 1 cut(s) 433
PcsI WCGNNNNNNNCGW 1 cut(s) 11
PfeI GAWTC 2 cut(s) 317, 524
PflFI GACNNNGTC 1 cut(s) 586
PkrI GCNGC 2 cut(s) 101, 789
PleI GAGTC 2 cut(s) 438, 517
PpsI GAGTC 2 cut(s) 438, 517
Psp124BI GAGCTC 1 cut(s) 639
Psp6I CCWGG 1 cut(s) 495
PspGI CCWGG 1 cut(s) 495
PspN4I GGNNCC 2 cut(s) 145, 419
PsuI RGATCY 2 cut(s) 143, 417
PsyI GACNNNGTC 1 cut(s) 586
RsaI GTAC 1 cut(s) 155
RsaNI GTAC 1 cut(s) 154
RseI CAYNNNNRTG 1 cut(s) 650
SacI GAGCTC 1 cut(s) 639
SaqAI TTAA 2 cut(s) 312, 843
SatI GCNGC 2 cut(s) 100, 788
Sau3AI GATC 7 cut(s) 143, 174, 207, 238, 417, 693, 820
ScaI AGTACT 1 cut(s) 155
SchI GAGTC 2 cut(s) 439, 518
ScrFI CCNGG 1 cut(s) 497
SduI GDGCHC 1 cut(s) 639
SfaNI GCATC 2 cut(s) 645, 886
SfuI TTCGAA 1 cut(s) 518
SmiMI CAYNNNNRTG 1 cut(s) 650
SmlI CTYRAG 1 cut(s) 917
SmoI CTYRAG 1 cut(s) 917
Sse9I AATT 5 cut(s) 57, 78, 271, 593, 973
SsiI CCGC 1 cut(s) 787
SspI AATATT 1 cut(s) 214
SspMI CTAG 1 cut(s) 567
SstI GAGCTC 1 cut(s) 639
StyD4I CCNGG 1 cut(s) 495
StyI CCWWGG 1 cut(s) 147
TaqI TCGA 3 cut(s) 5, 177, 518
TasI AATT 5 cut(s) 57, 78, 271, 593, 973
TatI WGTACW 1 cut(s) 153
TauI GCSGC 1 cut(s) 790
TfiI GAWTC 2 cut(s) 317, 524
Tru1I TTAA 2 cut(s) 312, 843
Tru9I TTAA 2 cut(s) 312, 843
TseFI GTSAC 4 cut(s) 378, 580, 588, 806
TseI GCWGC 1 cut(s) 99
Tsp45I GTSAC 4 cut(s) 378, 580, 588, 806
TspDTI ATGAA 4 cut(s) 107, 128, 242, 588
TspGWI ACGGA 1 cut(s) 502
Tth111I GACNNNGTC 1 cut(s) 586
XapI RAATTY 2 cut(s) 57, 271
XmiI GTMKAC 1 cut(s) 741
XspI CTAG 1 cut(s) 567
ZrmI AGTACT 1 cut(s) 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.