Rmu_co8287015.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8287015.1
OG0004232
Physical Location & Seq
Reverse (-)
2 .. 528
527 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8287015.1_g000001.1.cds

Sequence Viewer

Length: 291 bp
atgggggttgcagatgaagctgactttcttcgaataagggaggtactaaaacaacgcattcgaatagagagcaggaaggcgttggactctgctgatgactgctcggttgagaagaagaaaatacccaagcacagggatgcattaattcaagagctcaagattagttcacaggatgtgaggaaggtagagatccctgccacaaccacagcatcagagtcgtctgaaacagagtccgagtcgggtttgacaaaggctgcaaagctcagcgagtctcgggattactcttttttg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

97

Amino Acids

10.88

Weight (kDa)

5.88

Isoelectric Point (pI)

49.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 184
AfaI GTAC 1 cut(s) 45
AfiI CCNNNNNNNGG 1 cut(s) 132
AgsI TTSAA 1 cut(s) 149
AluBI AGCT 3 cut(s) 20, 154, 262
AluI AGCT 3 cut(s) 20, 154, 262
Alw21I GWGCWC 1 cut(s) 156
Alw26I GTCTC 1 cut(s) 276
AlwI GGATC 1 cut(s) 184
Ama87I CYCGRG 1 cut(s) 273
ApeKI GCWGC 1 cut(s) 254
AseI ATTAAT 1 cut(s) 143
AsuII TTCGAA 2 cut(s) 31, 61
AvaI CYCGRG 1 cut(s) 273
BanII GRGCYC 1 cut(s) 156
Bbv12I GWGCWC 1 cut(s) 156
BbvI GCAGC 1 cut(s) 241
BcgI CGANNNNNNTGC 2 cut(s) 198, 232
BcoDI GTCTC 1 cut(s) 276
BisI GCNGC 1 cut(s) 255
BlpI GCTNAGC 1 cut(s) 263
BlsI GCNGC 1 cut(s) 256
BmeT110I CYCGRG 1 cut(s) 273
BmsI GCATC 2 cut(s) 127, 218
Bpu1102I GCTNAGC 1 cut(s) 263
Bpu14I TTCGAA 2 cut(s) 31, 61
BpuEI CTTGAG 1 cut(s) 140
Bsc4I CCNNNNNNNGG 1 cut(s) 132
BseGI GGATG 2 cut(s) 142, 178
BseLI CCNNNNNNNGG 1 cut(s) 132
BseMII CTCAG 1 cut(s) 277
BseXI GCAGC 1 cut(s) 241
BsiHKAI GWGCWC 1 cut(s) 156
BsiHKCI CYCGRG 1 cut(s) 273
BslI CCNNNNNNNGG 1 cut(s) 132
BsmAI GTCTC 1 cut(s) 276
BsmI GAATGC 1 cut(s) 57
BsoBI CYCGRG 1 cut(s) 273
Bsp119I TTCGAA 2 cut(s) 31, 61
Bsp1286I GDGCHC 1 cut(s) 156
Bsp143I GATC 1 cut(s) 189
Bsp1720I GCTNAGC 1 cut(s) 263
BspCNI CTCAG 1 cut(s) 276
BspPI GGATC 1 cut(s) 184
BspT104I TTCGAA 2 cut(s) 31, 61
BssMI GATC 1 cut(s) 189
BstBI TTCGAA 2 cut(s) 31, 61
BstDEI CTNAG 1 cut(s) 263
BstF5I GGATG 2 cut(s) 142, 178
BstKTI GATC 1 cut(s) 192
BstMAI GTCTC 1 cut(s) 276
BstMBI GATC 1 cut(s) 189
BstMWI GCNNNNNNNGC 1 cut(s) 17
BstV1I GCAGC 1 cut(s) 241
BstX2I RGATCY 1 cut(s) 189
BstYI RGATCY 1 cut(s) 189
BtsCI GGATG 2 cut(s) 142, 178
Csp6I GTAC 1 cut(s) 44
CviJI RGCY 4 cut(s) 20, 154, 254, 262
CviKI_1 RGCY 4 cut(s) 20, 154, 254, 262
CviQI GTAC 1 cut(s) 44
DdeI CTNAG 1 cut(s) 263
DpnI GATC 1 cut(s) 191
DpnII GATC 1 cut(s) 189
Ecl136II GAGCTC 1 cut(s) 154
Eco24I GRGCYC 1 cut(s) 156
Eco53kI GAGCTC 1 cut(s) 154
Eco88I CYCGRG 1 cut(s) 273
EcoICRI GAGCTC 1 cut(s) 154
EcoT22I ATGCAT 1 cut(s) 142
EcoT38I GRGCYC 1 cut(s) 156
Fnu4HI GCNGC 1 cut(s) 255
FokI GGATG 2 cut(s) 149, 185
FriOI GRGCYC 1 cut(s) 156
Fsp4HI GCNGC 1 cut(s) 255
GluI GCNGC 1 cut(s) 255
HinfI GANTC 5 cut(s) 86, 215, 230, 236, 269
Hpy166II GTNNAC 1 cut(s) 167
Hpy188I TCNGA 3 cut(s) 214, 223, 235
Hpy188III TCNNGA 3 cut(s) 149, 157, 275
Hpy8I GTNNAC 1 cut(s) 167
HpyAV CCTTC 2 cut(s) 70, 175
HpyCH4V TGCA 3 cut(s) 11, 140, 257
HpyF10VI GCNNNNNNNGC 1 cut(s) 17
HpyF3I CTNAG 1 cut(s) 263
Kzo9I GATC 1 cut(s) 189
LpnPI CCDG 4 cut(s) 58, 118, 155, 207
Lsp1109I GCAGC 1 cut(s) 241
LweI GCATC 2 cut(s) 127, 218
MalI GATC 1 cut(s) 191
MboI GATC 1 cut(s) 189
MboII GAAGA 3 cut(s) 20, 124, 127
MflI RGATCY 1 cut(s) 189
MhlI GDGCHC 1 cut(s) 156
MluCI AATT 1 cut(s) 144
MlyI GAGTC 5 cut(s) 80, 224, 239, 245, 278
MmeI TCCRAC 1 cut(s) 63
MnlI CCTC 2 cut(s) 34, 171
Mph1103I ATGCAT 1 cut(s) 142
MseI TTAA 1 cut(s) 143
MslI CAYNNNNRTG 1 cut(s) 135
Mva1269I GAATGC 1 cut(s) 57
MwoI GCNNNNNNNGC 1 cut(s) 17
NdeII GATC 1 cut(s) 189
NsiI ATGCAT 1 cut(s) 142
NspV TTCGAA 2 cut(s) 31, 61
PctI GAATGC 1 cut(s) 57
PkrI GCNGC 1 cut(s) 256
PleI GAGTC 5 cut(s) 80, 223, 238, 244, 277
PpsI GAGTC 5 cut(s) 80, 223, 238, 244, 277
PshBI ATTAAT 1 cut(s) 143
Psp124BI GAGCTC 1 cut(s) 156
PsuI RGATCY 1 cut(s) 189
RsaI GTAC 1 cut(s) 45
RsaNI GTAC 1 cut(s) 44
RseI CAYNNNNRTG 1 cut(s) 135
SacI GAGCTC 1 cut(s) 156
SaqAI TTAA 1 cut(s) 143
SatI GCNGC 1 cut(s) 255
Sau3AI GATC 1 cut(s) 189
SchI GAGTC 5 cut(s) 80, 224, 239, 245, 278
SduI GDGCHC 1 cut(s) 156
SetI ASST 5 cut(s) 22, 45, 156, 186, 264
SfaNI GCATC 2 cut(s) 127, 218
SfuI TTCGAA 2 cut(s) 31, 61
SmiMI CAYNNNNRTG 1 cut(s) 135
SmlI CTYRAG 1 cut(s) 155
SmoI CTYRAG 1 cut(s) 155
Sse9I AATT 1 cut(s) 144
SstI GAGCTC 1 cut(s) 156
TaqI TCGA 2 cut(s) 31, 61
TasI AATT 1 cut(s) 144
Tru1I TTAA 1 cut(s) 143
Tru9I TTAA 1 cut(s) 143
TseI GCWGC 1 cut(s) 254
TspDTI ATGAA 1 cut(s) 30
VspI ATTAAT 1 cut(s) 143
Zsp2I ATGCAT 1 cut(s) 142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.