Rw4G036070

SPT2 chromatin protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0004232
Physical Location & Seq
Reverse (-)
62873845 .. 62875302
1458 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G036070.1

Sequence Viewer

Length: 975 bp
ATGGGGGTTGCAGATGAAGCTGACTTTCTTCGAATAAGGGAGGTACTAAAACAACGCATTCGAATAGAGAGCAGGAAGGCGTTGGACTCTGCTGATGACTGCTCGGTTGAGAAGAAGAAAATACCCAAGCACAGACCCTTCTTTGGCCCCTCAGAACATTGTATTGCTCAAAGATTGATTGACGGAAGGGATGCATTAATTCAAGAGCTCAAGATTAGTTCACAGGATGTGAGGAAGGTAGAGATCCCTGCCACAACCACAGCATCAGAGTCGTCCGAAACAGAGTCCGAGTCGGGTTTGACAAAGGCTGCAAAGCTCAGCGAGTCTCGGGATTACTCTTTTTTGTTAGCAGATGATGCCCATGTTCCAAAAGATTCAAAAGAAGATGCTGGAGTAGTTGGTAAAGATATATTTGTTTCGGAATCAAGTGAGGATGAACAAACTCCGGCTTCTGTACAAGGAGCTTTTACGAATTTGAAGTCTGATAAGCTGGGAAGACTTCCTCTGAAAACAATGTCAAGATCTCAGAAACCCTCCCTAGCAAAGAAAAGTCTTGTGCCAAGTAATACACTCAAGAAAGCAAAATCGCTGGCGGATAACCTTCAATCTACTCTGGAAAGCAAACCCTCATTGGAAAAGTCACAATCTGAAACAAAGCGAAGATTGATAAAAACAGCTGAAAATGTTGATGATAAGGATTCGGATGAGGATGAAGACAGTGTTGACGTTTCTTCTATCATCCGAGGACTGTTTAGAGGTAATCGTAAGAGGCCCTCAACTTTGGATTATGACGATAGAGATGATCGTGCAATGGTGTCCAGCTTTGCTGATATTGAGAGAGAAGAAAGGAGAAGCGCAAAACTTGCAAGGCAGGAAGATGAAATAGAGGCTCTACGAATTGAACAAGAAGAAAAGAAGGAAAGGTTAAGAAGAGCAAAGAAGCAGAAGATGCTGCATAAATCCACAACTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SPT2

Protein Analysis

324

Amino Acids

36.48

Weight (kDa)

6.53

Isoelectric Point (pI)

62.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SPT2 PF08243 214 - 311 2.4e-14 SPT2 chromatin protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 593
AclWI GGATC 1 cut(s) 238
AcsI RAATTY 1 cut(s) 472
AfaI GTAC 2 cut(s) 45, 456
AfiI CCNNNNNNNGG 1 cut(s) 143
AgsI TTSAA 5 cut(s) 203, 378, 478, 605, 902
AluBI AGCT 7 cut(s) 20, 208, 316, 464, 490, 677, 822
AluI AGCT 7 cut(s) 20, 208, 316, 464, 490, 677, 822
Alw21I GWGCWC 1 cut(s) 210
Alw26I GTCTC 1 cut(s) 330
AlwI GGATC 1 cut(s) 238
Ama87I CYCGRG 1 cut(s) 327
AoxI GGCC 2 cut(s) 145, 770
ApeKI GCWGC 2 cut(s) 308, 952
ApoI RAATTY 1 cut(s) 472
ArsI GACNNNNNNTTYG 2 cut(s) 464, 496
AseI ATTAAT 1 cut(s) 197
AspLEI GCGC 1 cut(s) 857
AspS9I GGNCC 2 cut(s) 146, 771
AsuII TTCGAA 2 cut(s) 31, 61
AvaI CYCGRG 1 cut(s) 327
BanII GRGCYC 1 cut(s) 210
BbsI GAAGAC 2 cut(s) 502, 720
Bbv12I GWGCWC 1 cut(s) 210
BbvI GCAGC 2 cut(s) 295, 939
BcgI CGANNNNNNTGC 2 cut(s) 252, 286
BcoDI GTCTC 1 cut(s) 330
BfaI CTAG 1 cut(s) 539
BglII AGATCT 1 cut(s) 521
BisI GCNGC 2 cut(s) 309, 953
BlpI GCTNAGC 1 cut(s) 317
BlsI GCNGC 2 cut(s) 310, 954
BmeT110I CYCGRG 1 cut(s) 327
BmgT120I GGNCC 2 cut(s) 146, 771
BmiI GGNNCC 1 cut(s) 148
BmsI GCATC 5 cut(s) 181, 272, 346, 376, 939
BpiI GAAGAC 2 cut(s) 502, 720
BpmI CTGGAG 1 cut(s) 411
Bpu1102I GCTNAGC 1 cut(s) 317
Bpu14I TTCGAA 2 cut(s) 31, 61
BpuEI CTTGAG 2 cut(s) 194, 557
BsaJI CCNNGG 1 cut(s) 742
Bsc4I CCNNNNNNNGG 1 cut(s) 143
Bse3DI GCAATG 1 cut(s) 816
BseDI CCNNGG 1 cut(s) 742
BseGI GGATG 6 cut(s) 196, 232, 439, 709, 715, 738
BseLI CCNNNNNNNGG 1 cut(s) 143
BseMI GCAATG 1 cut(s) 816
BseMII CTCAG 4 cut(s) 165, 331, 539, 960
BseXI GCAGC 2 cut(s) 295, 939
BseYI CCCAGC 1 cut(s) 490
BshFI GGCC 2 cut(s) 147, 772
BsiHKAI GWGCWC 1 cut(s) 210
BsiHKCI CYCGRG 1 cut(s) 327
BsiSI CCGG 1 cut(s) 446
BslI CCNNNNNNNGG 1 cut(s) 143
BsmAI GTCTC 1 cut(s) 330
BsmI GAATGC 1 cut(s) 57
BsnI GGCC 2 cut(s) 147, 772
BsoBI CYCGRG 1 cut(s) 327
Bsp119I TTCGAA 2 cut(s) 31, 61
Bsp1286I GDGCHC 1 cut(s) 210
Bsp1407I TGTACA 1 cut(s) 454
Bsp143I GATC 3 cut(s) 243, 521, 802
Bsp1720I GCTNAGC 1 cut(s) 317
BspACI CCGC 1 cut(s) 593
BspANI GGCC 2 cut(s) 147, 772
BspCNI CTCAG 4 cut(s) 164, 330, 538, 961
BspLI GGNNCC 1 cut(s) 148
BspPI GGATC 1 cut(s) 238
BspQI GCTCTTC 1 cut(s) 925
BspT104I TTCGAA 2 cut(s) 31, 61
BsrDI GCAATG 1 cut(s) 816
BsrGI TGTACA 1 cut(s) 454
BssECI CCNNGG 1 cut(s) 742
BssMI GATC 3 cut(s) 243, 521, 802
Bst4CI ACNGT 2 cut(s) 719, 750
Bst6I CTCTTC 1 cut(s) 925
BstAPI GCANNNNNTGC 3 cut(s) 356, 863, 949
BstAUI TGTACA 1 cut(s) 454
BstBI TTCGAA 2 cut(s) 31, 61
BstC8I GCNNGC 1 cut(s) 591
BstDEI CTNAG 4 cut(s) 151, 317, 525, 969
BstF5I GGATG 6 cut(s) 196, 232, 439, 709, 715, 738
BstHHI GCGC 1 cut(s) 857
BstKTI GATC 3 cut(s) 246, 524, 805
BstMAI GTCTC 1 cut(s) 330
BstMBI GATC 3 cut(s) 243, 521, 802
BstMWI GCNNNNNNNGC 4 cut(s) 17, 356, 863, 949
BstV1I GCAGC 2 cut(s) 295, 939
BstV2I GAAGAC 2 cut(s) 502, 720
BstX2I RGATCY 2 cut(s) 243, 521
BstYI RGATCY 2 cut(s) 243, 521
BsuRI GGCC 2 cut(s) 147, 772
BtsCI GGATG 6 cut(s) 196, 232, 439, 709, 715, 738
BtsIMutI CAGTG 1 cut(s) 724
Cac8I GCNNGC 1 cut(s) 591
CfoI GCGC 1 cut(s) 857
Cfr13I GGNCC 2 cut(s) 146, 771
Csp6I GTAC 2 cut(s) 44, 455
CviAII CATG 1 cut(s) 362
CviQI GTAC 2 cut(s) 44, 455
DdeI CTNAG 4 cut(s) 151, 317, 525, 969
DpnI GATC 3 cut(s) 245, 523, 804
DpnII GATC 3 cut(s) 243, 521, 802
Eam1104I CTCTTC 1 cut(s) 925
EarI CTCTTC 1 cut(s) 925
EciI GGCGGA 1 cut(s) 608
Ecl136II GAGCTC 1 cut(s) 208
Eco24I GRGCYC 1 cut(s) 210
Eco53kI GAGCTC 1 cut(s) 208
Eco88I CYCGRG 1 cut(s) 327
EcoICRI GAGCTC 1 cut(s) 208
EcoO109I RGGNCCY 1 cut(s) 771
EcoT22I ATGCAT 1 cut(s) 196
EcoT38I GRGCYC 1 cut(s) 210
FaeI CATG 1 cut(s) 365
FaiI YATR 4 cut(s) 363, 410, 789, 957
FatI CATG 1 cut(s) 361
Fnu4HI GCNGC 2 cut(s) 309, 953
FokI GGATG 6 cut(s) 203, 239, 446, 716, 722, 725
FriOI GRGCYC 1 cut(s) 210
Fsp4HI GCNGC 2 cut(s) 309, 953
FspBI CTAG 1 cut(s) 539
GlaI GCGC 1 cut(s) 856
GluI GCNGC 2 cut(s) 309, 953
GsaI CCCAGC 1 cut(s) 494
GsuI CTGGAG 1 cut(s) 411
HaeIII GGCC 2 cut(s) 147, 772
HapII CCGG 1 cut(s) 446
HhaI GCGC 1 cut(s) 857
Hin1II CATG 1 cut(s) 365
Hin6I GCGC 1 cut(s) 855
HinP1I GCGC 1 cut(s) 855
HincII GTYRAC 1 cut(s) 724
HindII GTYRAC 1 cut(s) 724
HinfI GANTC 8 cut(s) 86, 269, 284, 290, 323, 374, 422, 698
HpaII CCGG 1 cut(s) 446
Hpy166II GTNNAC 2 cut(s) 221, 724
Hpy188III TCNNGA 6 cut(s) 203, 211, 329, 519, 574, 614
Hpy8I GTNNAC 2 cut(s) 221, 724
HpyAV CCTTC 6 cut(s) 70, 148, 180, 229, 611, 910
HpyCH4III ACNGT 2 cut(s) 719, 750
HpyCH4IV ACGT 1 cut(s) 726
HpyCH4V TGCA 6 cut(s) 11, 194, 311, 809, 866, 955
HpyF10VI GCNNNNNNNGC 4 cut(s) 17, 356, 863, 949
HpyF3I CTNAG 4 cut(s) 151, 317, 525, 969
HpySE526I ACGT 1 cut(s) 726
Hsp92II CATG 1 cut(s) 365
HspAI GCGC 1 cut(s) 855
Kzo9I GATC 3 cut(s) 243, 521, 802
LguI GCTCTTC 1 cut(s) 925
LmnI GCTCC 1 cut(s) 461
Lsp1109I GCAGC 2 cut(s) 295, 939
LweI GCATC 5 cut(s) 181, 272, 346, 376, 939
MaeI CTAG 1 cut(s) 539
MaeII ACGT 1 cut(s) 726
MaeIII GTNAC 1 cut(s) 639
MalI GATC 3 cut(s) 245, 523, 804
MboI GATC 3 cut(s) 243, 521, 802
MflI RGATCY 2 cut(s) 243, 521
MhlI GDGCHC 1 cut(s) 210
MluCI AATT 3 cut(s) 198, 472, 897
MlyI GAGTC 5 cut(s) 80, 278, 293, 299, 332
MmeI TCCRAC 1 cut(s) 63
Mph1103I ATGCAT 1 cut(s) 196
MseI TTAA 2 cut(s) 197, 926
MspA1I CMGCKG 1 cut(s) 677
MspI CCGG 1 cut(s) 446
Mva1269I GAATGC 1 cut(s) 57
MwoI GCNNNNNNNGC 4 cut(s) 17, 356, 863, 949
NdeII GATC 3 cut(s) 243, 521, 802
NlaIII CATG 1 cut(s) 365
NlaIV GGNNCC 1 cut(s) 148
NmuCI GTSAC 1 cut(s) 639
NsiI ATGCAT 1 cut(s) 196
NspV TTCGAA 2 cut(s) 31, 61
PciSI GCTCTTC 1 cut(s) 925
PctI GAATGC 1 cut(s) 57
PfeI GAWTC 3 cut(s) 374, 422, 698
PkrI GCNGC 2 cut(s) 310, 954
PleI GAGTC 5 cut(s) 80, 277, 292, 298, 331
PpsI GAGTC 5 cut(s) 80, 277, 292, 298, 331
PshBI ATTAAT 1 cut(s) 197
Psp124BI GAGCTC 1 cut(s) 210
PspFI CCCAGC 1 cut(s) 490
PspN4I GGNNCC 1 cut(s) 148
PspPI GGNCC 2 cut(s) 146, 771
PsuI RGATCY 2 cut(s) 243, 521
PvuII CAGCTG 1 cut(s) 677
RsaI GTAC 2 cut(s) 45, 456
RsaNI GTAC 2 cut(s) 44, 455
SacI GAGCTC 1 cut(s) 210
SapI GCTCTTC 1 cut(s) 925
SaqAI TTAA 2 cut(s) 197, 926
SatI GCNGC 2 cut(s) 309, 953
Sau3AI GATC 3 cut(s) 243, 521, 802
Sau96I GGNCC 2 cut(s) 146, 771
SchI GAGTC 5 cut(s) 80, 278, 293, 299, 332
SduI GDGCHC 1 cut(s) 210
SfaNI GCATC 5 cut(s) 181, 272, 346, 376, 939
SfuI TTCGAA 2 cut(s) 31, 61
SmlI CTYRAG 2 cut(s) 209, 572
SmoI CTYRAG 2 cut(s) 209, 572
Sse9I AATT 3 cut(s) 198, 472, 897
SsiI CCGC 1 cut(s) 593
SspMI CTAG 1 cut(s) 539
SstI GAGCTC 1 cut(s) 210
TaaI ACNGT 2 cut(s) 719, 750
TaiI ACGT 1 cut(s) 729
TaqI TCGA 2 cut(s) 31, 61
TasI AATT 3 cut(s) 198, 472, 897
TatI WGTACW 1 cut(s) 454
TfiI GAWTC 3 cut(s) 374, 422, 698
Tru1I TTAA 2 cut(s) 197, 926
Tru9I TTAA 2 cut(s) 197, 926
TscAI CASTG 1 cut(s) 724
TseFI GTSAC 1 cut(s) 639
TseI GCWGC 2 cut(s) 308, 952
Tsp45I GTSAC 1 cut(s) 639
TspDTI ATGAA 4 cut(s) 30, 450, 726, 894
TspGWI ACGGA 1 cut(s) 198
TspRI CASTG 1 cut(s) 724
VspI ATTAAT 1 cut(s) 197
XapI RAATTY 1 cut(s) 472
XspI CTAG 1 cut(s) 539
Zsp2I ATGCAT 1 cut(s) 196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.