Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0004232

Physical Location & Seq

Genomic Coordinates Reverse (-)

4204967 .. 4205701

Gene Structure 735 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG063300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGTCGATGACGACGATGGGTGTTGCAGGTAACATGGGTATTCCTGAACTCCGGCAAATTCTGAAAGAGCGATACAGAATCGCTAATAACGTGAAAAGCTGCTCGGCTGAGATGAAAGAGACCAAGAACTCATCCTTGTTTGGGTCCTCGGAGTACTCTCTTTCACAAAGACTGATCGACGAGAGTAAAGCTCTTATGCCGGAGATGATCAATATTCTGGATAAGACGAACAACAATGATCATCAAAAGCCCACAAAAGCGACAAAGCAAAATTCACGTGTGGATTTGAAGCTTCAGCGAGCTAAGAAGGTGAAGGAATCGCGTGATTACTCTTTCTTGTTATCAGAGACTTCAGAAGTTCCGAAGATTTCAAAAGCGTCACCACCAATGTCTATTCCTAAAGCTGATGGGAATGGGATCCCAAAGAAGAGTCATGATAAGGCGTCTTCTCTGAAACCAATGAAGAGTGGTGATGATAACAACAAGTCCAAAGTCTCCCAGGCAAAGTCAGAGTCCGTTTCGAAATATTCAGTTCTGGTTTCTGGTTCAAAGAGTTTGAAGTCTCGGCCTAGTGAGAACATGGTGACAAAGTCACAATTTTCATCTGCAAAGCAAACCTTGAACCCGAAACAAGCAGAGCTCAGTAACACAAAAGTGATGCCGAAAAAGGAAGGTCTTTGCTTGAAAGAAAAAAATGATCAAGAAACGCCGAGTGGAAGAGGATTTGGGGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SPT2

Protein Analysis

244

Amino Acids

26.82

Weight (kDa)

9.81

Isoelectric Point (pI)

39.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004232)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g35540 FvH4_6g05810
prunus_persica	Prupe.1G068500_v2.0.a1 Prupe.2G308100_v2.0.a1
pyrus_communis	pycom01g22690 pycom05g13400
rosa_laevigata	RLG00000005759 RLG00000025421
rosa_multiflora	Rmu_co8287015.1_g000001 Rmu_sc0000050.1_g000036 Rmu_sc0001792.1_g000022 Rmu_sc0003140.1_g000017
rosa_roxburghii	Rroxscaffold_5G00385700 Rroxscaffold_6G00424820
rosa_rugosa	Rorug03G0001600 Rorug03G0001900 Rorug03G0001900 Rorug04G0359700
rosa_samantha	Rh3AG061500 Rh3AG061900 Rh3BG063300 Rh3BG063700 Rh3CG062200 Rh3CG062600 Rh3DG063200 Rh3DG063300 Rh3DG063400 Rh4AG420600 Rh4BG432500 Rh4CG447100 Rh4DG428600
rosa_wichuraiana	Rw3G004810 Rw4G036070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	17
AccII	CGCG	1 cut(s)	322
AclWI	GGATC	2 cut(s)	412, 425
AcsI	RAATTY	2 cut(s)	57, 271
AcuI	CTGAAG	2 cut(s)	278, 336
AcvI	CACGTG	1 cut(s)	278
AcyI	GRCGYC	1 cut(s)	443
AfaI	GTAC	1 cut(s)	155
AfiI	CCNNNNNNNGG	1 cut(s)	141
AflIII	ACRYGT	1 cut(s)	277
AgsI	TTSAA	6 cut(s)	289, 372, 549, 559, 622, 685
AjnI	CCWGG	1 cut(s)	498
AleI	CACNNNNGTG	1 cut(s)	653
AluBI	AGCT	6 cut(s)	99, 191, 292, 302, 404, 640
AluI	AGCT	6 cut(s)	99, 191, 292, 302, 404, 640
Alw21I	GWGCWC	1 cut(s)	642
Alw26I	GTCTC	4 cut(s)	113, 341, 499, 567
AlwI	GGATC	2 cut(s)	412, 425
AoxI	GGCC	1 cut(s)	566
ApeKI	GCWGC	1 cut(s)	99
ApoI	RAATTY	2 cut(s)	57, 271
ArsI	GACNNNNNNTTYG	2 cut(s)	497, 529
AspS9I	GGNCC	1 cut(s)	144
AsuHPI	GGTGA	4 cut(s)	322, 372, 482, 595
AsuII	TTCGAA	1 cut(s)	521
AvaII	GGWCC	1 cut(s)	144
BamHI	GGATCC	1 cut(s)	417
BanII	GRGCYC	1 cut(s)	642
BbrPI	CACGTG	1 cut(s)	278
BbsI	GAAGAC	1 cut(s)	438
Bbv12I	GWGCWC	1 cut(s)	642
BbvI	GCAGC	1 cut(s)	86
BccI	CCATC	2 cut(s)	10, 401
BciT130I	CCWGG	1 cut(s)	500
BclI	TGATCA	3 cut(s)	207, 238, 697
BcoDI	GTCTC	4 cut(s)	113, 341, 499, 567
BfaI	CTAG	1 cut(s)	570
BfuAI	ACCTGC	1 cut(s)	17
BisI	GCNGC	1 cut(s)	100
BlsI	GCNGC	1 cut(s)	101
BmcAI	AGTACT	1 cut(s)	155
Bme1390I	CCNGG	1 cut(s)	500
Bme18I	GGWCC	1 cut(s)	144
BmgT120I	GGNCC	1 cut(s)	144
BmiI	GGNNCC	2 cut(s)	145, 419
BmrFI	CCNGG	1 cut(s)	500
BmsI	GCATC	1 cut(s)	648
BpiI	GAAGAC	1 cut(s)	438
BplI	GAGNNNNNCTC	2 cut(s)	175, 207
Bpu14I	TTCGAA	1 cut(s)	521
BsaAI	YACGTR	1 cut(s)	278
BsaHI	GRCGYC	1 cut(s)	443
BsaI	GGTCTC	1 cut(s)	113
BsaJI	CCNNGG	2 cut(s)	147, 498
Bsc4I	CCNNNNNNNGG	1 cut(s)	141
BseBI	CCWGG	1 cut(s)	500
BseDI	CCNNGG	2 cut(s)	147, 498
BseGI	GGATG	1 cut(s)	131
BseLI	CCNNNNNNNGG	1 cut(s)	141
BseMII	CTCAG	2 cut(s)	99, 655
BseXI	GCAGC	1 cut(s)	86
Bsh1236I	CGCG	1 cut(s)	322
BshFI	GGCC	1 cut(s)	568
BsiHKAI	GWGCWC	1 cut(s)	642
BsiSI	CCGG	2 cut(s)	52, 200
BslI	CCNNNNNNNGG	1 cut(s)	141
BsmAI	GTCTC	4 cut(s)	113, 341, 499, 567
BsnI	GGCC	1 cut(s)	568
Bso31I	GGTCTC	1 cut(s)	113
Bsp119I	TTCGAA	1 cut(s)	521
Bsp1286I	GDGCHC	1 cut(s)	642
Bsp143I	GATC	5 cut(s)	174, 207, 238, 417, 697
BspANI	GGCC	1 cut(s)	568
BspCNI	CTCAG	2 cut(s)	100, 654
BspFNI	CGCG	1 cut(s)	322
BspHI	TCATGA	1 cut(s)	433
BspLI	GGNNCC	2 cut(s)	145, 419
BspMI	ACCTGC	1 cut(s)	17
BspPI	GGATC	2 cut(s)	412, 425
BspT104I	TTCGAA	1 cut(s)	521
BspTNI	GGTCTC	1 cut(s)	113
BssECI	CCNNGG	2 cut(s)	147, 498
BssMI	GATC	5 cut(s)	174, 207, 238, 417, 697
BssNI	GRCGYC	1 cut(s)	443
Bst2UI	CCWGG	1 cut(s)	500
Bst6I	CTCTTC	3 cut(s)	422, 458, 712
BstACI	GRCGYC	1 cut(s)	443
BstBAI	YACGTR	1 cut(s)	278
BstBI	TTCGAA	1 cut(s)	521
BstC8I	GCNNGC	1 cut(s)	300
BstDEI	CTNAG	3 cut(s)	108, 303, 641
BstF5I	GGATG	1 cut(s)	131
BstFNI	CGCG	1 cut(s)	322
BstKTI	GATC	5 cut(s)	177, 210, 241, 420, 700
BstMAI	GTCTC	4 cut(s)	113, 341, 499, 567
BstMBI	GATC	5 cut(s)	174, 207, 238, 417, 697
BstNI	CCWGG	1 cut(s)	500
BstSCI	CCNGG	1 cut(s)	498
BstUI	CGCG	1 cut(s)	322
BstV1I	GCAGC	1 cut(s)	86
BstV2I	GAAGAC	1 cut(s)	438
BstX2I	RGATCY	1 cut(s)	417
BstYI	RGATCY	1 cut(s)	417
BsuRI	GGCC	1 cut(s)	568
BtsCI	GGATG	1 cut(s)	131
BveI	ACCTGC	1 cut(s)	17
Cac8I	GCNNGC	1 cut(s)	300
CciI	TCATGA	1 cut(s)	433
Cfr13I	GGNCC	1 cut(s)	144
CseI	GACGC	2 cut(s)	366, 432
Csp6I	GTAC	1 cut(s)	154
CviAII	CATG	3 cut(s)	34, 434, 580
CviJI	RGCY	9 cut(s)	99, 107, 191, 250, 292, 302, 404, 568, 640
CviKI_1	RGCY	9 cut(s)	99, 107, 191, 250, 292, 302, 404, 568, 640
CviQI	GTAC	1 cut(s)	154
DdeI	CTNAG	3 cut(s)	108, 303, 641
DpnI	GATC	5 cut(s)	176, 209, 240, 419, 699
DpnII	GATC	5 cut(s)	174, 207, 238, 417, 697
Eam1104I	CTCTTC	3 cut(s)	422, 458, 712
EarI	CTCTTC	3 cut(s)	422, 458, 712
Ecl136II	GAGCTC	1 cut(s)	640
Eco24I	GRGCYC	1 cut(s)	642
Eco31I	GGTCTC	1 cut(s)	113
Eco47I	GGWCC	1 cut(s)	144
Eco53kI	GAGCTC	1 cut(s)	640
Eco57I	CTGAAG	2 cut(s)	278, 336
Eco72I	CACGTG	1 cut(s)	278
EcoICRI	GAGCTC	1 cut(s)	640
EcoO109I	RGGNCCY	1 cut(s)	144
EcoRII	CCWGG	1 cut(s)	498
EcoT38I	GRGCYC	1 cut(s)	642
FaeI	CATG	3 cut(s)	37, 437, 583
FaiI	YATR	4 cut(s)	35, 197, 435, 581
FalI	AAGNNNNNCTT	2 cut(s)	602, 634
FatI	CATG	3 cut(s)	33, 433, 579
FbaI	TGATCA	3 cut(s)	207, 238, 697
Fnu4HI	GCNGC	1 cut(s)	100
FokI	GGATG	1 cut(s)	118
FriOI	GRGCYC	1 cut(s)	642
Fsp4HI	GCNGC	1 cut(s)	100
FspBI	CTAG	1 cut(s)	570
GluI	GCNGC	1 cut(s)	100
HaeIII	GGCC	1 cut(s)	568
HapII	CCGG	2 cut(s)	52, 200
HgaI	GACGC	2 cut(s)	366, 432
Hin1I	GRCGYC	1 cut(s)	443
Hin1II	CATG	3 cut(s)	37, 437, 583
HindIII	AAGCTT	1 cut(s)	290
HinfI	GANTC	4 cut(s)	78, 317, 430, 512
HpaII	CCGG	2 cut(s)	52, 200
HphI	GGTGA	4 cut(s)	322, 372, 482, 595
Hpy188I	TCNGA	7 cut(s)	63, 151, 346, 355, 363, 453, 511
Hpy188III	TCNNGA	4 cut(s)	44, 218, 434, 701
Hpy99I	CGWCG	2 cut(s)	16, 182
HpyAV	CCTTC	3 cut(s)	301, 307, 665
HpyCH4IV	ACGT	2 cut(s)	90, 277
HpyCH4V	TGCA	2 cut(s)	26, 608
HpyF3I	CTNAG	3 cut(s)	108, 303, 641
HpySE526I	ACGT	2 cut(s)	90, 277
Hsp92I	GRCGYC	1 cut(s)	443
Hsp92II	CATG	3 cut(s)	37, 437, 583
Ksp22I	TGATCA	3 cut(s)	207, 238, 697
Kzo9I	GATC	5 cut(s)	174, 207, 238, 417, 697
LpnPI	CCDG	9 cut(s)	12, 57, 65, 203, 213, 485, 512, 521, 528
Lsp1109I	GCAGC	1 cut(s)	86
LweI	GCATC	1 cut(s)	648
MaeI	CTAG	1 cut(s)	570
MaeII	ACGT	2 cut(s)	90, 277
MaeIII	GTNAC	5 cut(s)	29, 378, 583, 591, 644
MalI	GATC	5 cut(s)	176, 209, 240, 419, 699
MboI	GATC	5 cut(s)	174, 207, 238, 417, 697
MboII	GAAGA	5 cut(s)	376, 438, 439, 475, 729
MflI	RGATCY	1 cut(s)	417
MhlI	GDGCHC	1 cut(s)	642
MluCI	AATT	3 cut(s)	57, 271, 596
MlyI	GAGTC	2 cut(s)	439, 521
MnlI	CCTC	2 cut(s)	157, 713
MslI	CAYNNNNRTG	1 cut(s)	653
MspI	CCGG	2 cut(s)	52, 200
MspR9I	CCNGG	1 cut(s)	500
MvaI	CCWGG	1 cut(s)	500
MvnI	CGCG	1 cut(s)	322
NdeII	GATC	5 cut(s)	174, 207, 238, 417, 697
NlaIII	CATG	3 cut(s)	37, 437, 583
NlaIV	GGNNCC	2 cut(s)	145, 419
NmeAIII	GCCGAG	3 cut(s)	83, 544, 735
NmuCI	GTSAC	3 cut(s)	378, 583, 591
NspV	TTCGAA	1 cut(s)	521
OliI	CACNNNNGTG	1 cut(s)	653
PagI	TCATGA	1 cut(s)	433
PcsI	WCGNNNNNNNCGW	2 cut(s)	11, 87
PfeI	GAWTC	2 cut(s)	78, 317
PflFI	GACNNNGTC	1 cut(s)	589
PkrI	GCNGC	1 cut(s)	101
PleI	GAGTC	2 cut(s)	438, 520
PmaCI	CACGTG	1 cut(s)	278
PmlI	CACGTG	1 cut(s)	278
PpsI	GAGTC	2 cut(s)	438, 520
Ppu21I	YACGTR	1 cut(s)	278
PpuMI	RGGWCCY	1 cut(s)	144
Psp124BI	GAGCTC	1 cut(s)	642
Psp5II	RGGWCCY	1 cut(s)	144
Psp6I	CCWGG	1 cut(s)	498
PspCI	CACGTG	1 cut(s)	278
PspGI	CCWGG	1 cut(s)	498
PspN4I	GGNNCC	2 cut(s)	145, 419
PspPI	GGNCC	1 cut(s)	144
PspPPI	RGGWCCY	1 cut(s)	144
PsuI	RGATCY	1 cut(s)	417
PsyI	GACNNNGTC	1 cut(s)	589
RsaI	GTAC	1 cut(s)	155
RsaNI	GTAC	1 cut(s)	154
RseI	CAYNNNNRTG	1 cut(s)	653
SacI	GAGCTC	1 cut(s)	642
SatI	GCNGC	1 cut(s)	100
Sau3AI	GATC	5 cut(s)	174, 207, 238, 417, 697
Sau96I	GGNCC	1 cut(s)	144
ScaI	AGTACT	1 cut(s)	155
SchI	GAGTC	2 cut(s)	439, 521
ScrFI	CCNGG	1 cut(s)	500
SduI	GDGCHC	1 cut(s)	642
SfaNI	GCATC	1 cut(s)	648
SfuI	TTCGAA	1 cut(s)	521
SinI	GGWCC	1 cut(s)	144
SmiMI	CAYNNNNRTG	1 cut(s)	653
Sse9I	AATT	3 cut(s)	57, 271, 596
SspI	AATATT	2 cut(s)	214, 527
SspMI	CTAG	1 cut(s)	570
SstI	GAGCTC	1 cut(s)	642
StyD4I	CCNGG	1 cut(s)	498
TaiI	ACGT	2 cut(s)	93, 280
TaqI	TCGA	3 cut(s)	5, 177, 521
TasI	AATT	3 cut(s)	57, 271, 596
TatI	WGTACW	1 cut(s)	153
TfiI	GAWTC	2 cut(s)	78, 317
TseFI	GTSAC	3 cut(s)	378, 583, 591
TseI	GCWGC	1 cut(s)	99
Tsp45I	GTSAC	3 cut(s)	378, 583, 591
TspDTI	ATGAA	3 cut(s)	128, 476, 591
TspGWI	ACGGA	1 cut(s)	505
Tth111I	GACNNNGTC	1 cut(s)	589
VpaK11BI	GGWCC	1 cut(s)	144
XapI	RAATTY	2 cut(s)	57, 271
XspI	CTAG	1 cut(s)	570
ZrmI	AGTACT	1 cut(s)	155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.