FvH4_6g05810

Protein SPT2 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0004232
Physical Location & Seq
Reverse (-)
3302040 .. 3303038
999 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g05810.t1

Sequence Viewer

Length: 999 bp
ATGTCCACGATGACGATGGGTGAAGCAGGTGGCATGGATATTCTTGAAATCCGGCGAATTCTGAAAGAGCGATACAGAAAGGCTAATAACCTGAAGAGCTGCTCGGCTGAGACGAAAGAGGCCACGAACACATCCTTGTTCGCCTCGGAGTACTCTCTTGCACCAAGACTGATCGACGACAGGGAAGCTCTTATGCCGGAGATGATCAAGATTCTGGATAAGATGGACAACAACAGTCATCAAATGCCCGCAAAAGCAACAAAGCCGAATTCCTGTGTGGGTTTGAAGGCTCAGCAAGCTAAGAAGTTAAAGGAATCGCGTGATTTCTCTTCCTTGTTATCAGAGACTCCAGAAGTTCCAAAGATTCCGAAACCATCACCACCGAAGACTGTTCCCAAAGCTGATGGGAATAGGATCACAAAGAAGAGTCAGCCTGTTCCTAAAGCTGTTGGGAATGGGATCCCAAAGAAGAGTGTGTCTTCTTTGAAACCCAAGAAGAGCATTAATGATAGCAAATCCAAAGTCTACTCGGCCAAGTCAGAATCGGTTCCGAAAGATTATGGTTCAAAGAGTTTGGAGTCTCGGCCTCGTGAGAACATGGTGACAAAGTCACAAGCTGCATCTGCAAAGCAAAGCTTGAGCCCTAAACAAGCAGATGTCAGTAACACAAAAGCGATGCCAAGAAAAGAAGGTCCTTGCTTGAAGAGAAAGATGATCAAGAAACGCCGAGTGGAAGAGGATTTGGGGGATGATGAAGATGTAGATGTTTCTTCAATAATTCAAGAAATAATGGGGAAAAGAGGAAAGAGGCGATACAGGGATTATGGTGCTGACGGCGATGATCGTGCTATGGTGTCTGGCTTTAATGAGATCTTGAGAGAAGAGAATAGGAGTGCAAGGATCGCGAGTGAGGAAGATGCAATAGAAGCTCTAAGGCTTGAGCAAGAAGCCAAACAAGAGAGGTTGAGCAAAGCAAAGAAGCAGAAGTTAACGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SPT2

Protein Analysis

333

Amino Acids

36.98

Weight (kDa)

9.71

Isoelectric Point (pI)

53.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SPT2 PF08243 243 - 324 1.9e-13 SPT2 chromatin protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 17
Acc36I ACCTGC 1 cut(s) 17
AccI GTMKAC 1 cut(s) 525
AccII CGCG 2 cut(s) 319, 905
AciI CCGC 1 cut(s) 249
AclWI GGATC 4 cut(s) 422, 454, 467, 908
AcoI YGGCCR 1 cut(s) 531
AcsI RAATTY 2 cut(s) 57, 268
AcuI CTGAAG 1 cut(s) 113
AfaI GTAC 1 cut(s) 152
AgsI TTSAA 7 cut(s) 47, 286, 487, 567, 703, 774, 782
AluBI AGCT 8 cut(s) 99, 188, 299, 401, 446, 617, 636, 929
AluI AGCT 8 cut(s) 99, 188, 299, 401, 446, 617, 636, 929
Alw26I GTCTC 3 cut(s) 104, 338, 585
AlwI GGATC 4 cut(s) 422, 454, 467, 908
AoxI GGCC 3 cut(s) 120, 531, 584
ApeKI GCWGC 2 cut(s) 99, 617
ApoI RAATTY 2 cut(s) 57, 268
ArsI GACNNNNNNTTYG 2 cut(s) 507, 539
AseI ATTAAT 1 cut(s) 504
Asp700I GAANNNNTTC 1 cut(s) 546
AspS9I GGNCC 1 cut(s) 692
AsuHPI GGTGA 3 cut(s) 32, 369, 613
AvaII GGWCC 1 cut(s) 692
BamHI GGATCC 1 cut(s) 459
BanII GRGCYC 1 cut(s) 644
BauI CACGAG 1 cut(s) 588
BbsI GAAGAC 2 cut(s) 392, 471
BbvI GCAGC 2 cut(s) 86, 604
BccI CCATC 4 cut(s) 10, 217, 382, 398
BceAI ACGGC 1 cut(s) 850
BcgI CGANNNNNNTGC 2 cut(s) 827, 861
BclI TGATCA 2 cut(s) 204, 714
BcoDI GTCTC 3 cut(s) 104, 338, 585
BfuAI ACCTGC 1 cut(s) 17
BglII AGATCT 1 cut(s) 870
BisI GCNGC 2 cut(s) 100, 618
BlpI GCTNAGC 1 cut(s) 291
BlsI GCNGC 2 cut(s) 101, 619
BmcAI AGTACT 1 cut(s) 152
Bme18I GGWCC 1 cut(s) 692
BmgT120I GGNCC 1 cut(s) 692
BmiI GGNNCC 2 cut(s) 461, 549
BmsI GCATC 3 cut(s) 629, 666, 907
BpiI GAAGAC 2 cut(s) 392, 471
BpmI CTGGAG 1 cut(s) 333
Bpu1102I GCTNAGC 1 cut(s) 291
BpuEI CTTGAG 3 cut(s) 658, 895, 959
BsaJI CCNNGG 1 cut(s) 144
BseDI CCNNGG 1 cut(s) 144
BseGI GGATG 2 cut(s) 131, 754
BseMII CTCAG 2 cut(s) 99, 305
BseXI GCAGC 2 cut(s) 86, 604
Bsh1236I CGCG 2 cut(s) 319, 905
BshFI GGCC 3 cut(s) 122, 533, 586
BsiSI CCGG 2 cut(s) 52, 197
BsmAI GTCTC 3 cut(s) 104, 338, 585
BsmBI CGTCTC 1 cut(s) 104
BsnI GGCC 3 cut(s) 122, 533, 586
Bsp1286I GDGCHC 1 cut(s) 644
Bsp143I GATC 8 cut(s) 171, 204, 414, 459, 714, 841, 870, 900
Bsp1720I GCTNAGC 1 cut(s) 291
Bsp68I TCGCGA 1 cut(s) 905
BspACI CCGC 1 cut(s) 249
BspANI GGCC 3 cut(s) 122, 533, 586
BspCNI CTCAG 2 cut(s) 100, 304
BspFNI CGCG 2 cut(s) 319, 905
BspLI GGNNCC 2 cut(s) 461, 549
BspMI ACCTGC 1 cut(s) 17
BspPI GGATC 4 cut(s) 422, 454, 467, 908
BspQI GCTCTTC 2 cut(s) 89, 491
BssECI CCNNGG 1 cut(s) 144
BssMI GATC 8 cut(s) 171, 204, 414, 459, 714, 841, 870, 900
BssSI CACGAG 1 cut(s) 588
Bst2BI CACGAG 1 cut(s) 588
Bst4CI ACNGT 2 cut(s) 236, 391
Bst6I CTCTTC 8 cut(s) 89, 334, 419, 464, 491, 698, 729, 876
BstC8I GCNNGC 2 cut(s) 249, 297
BstDEI CTNAG 4 cut(s) 108, 291, 300, 932
BstF5I GGATG 2 cut(s) 131, 754
BstFNI CGCG 2 cut(s) 319, 905
BstKTI GATC 8 cut(s) 174, 207, 417, 462, 717, 844, 873, 903
BstMAI GTCTC 3 cut(s) 104, 338, 585
BstMBI GATC 8 cut(s) 171, 204, 414, 459, 714, 841, 870, 900
BstMWI GCNNNNNNNGC 4 cut(s) 296, 623, 902, 926
BstUI CGCG 2 cut(s) 319, 905
BstV1I GCAGC 2 cut(s) 86, 604
BstV2I GAAGAC 2 cut(s) 392, 471
BstX2I RGATCY 2 cut(s) 459, 870
BstYI RGATCY 2 cut(s) 459, 870
BsuRI GGCC 3 cut(s) 122, 533, 586
BtgZI GCGATG 2 cut(s) 689, 852
BtsCI GGATG 2 cut(s) 131, 754
BtuMI TCGCGA 1 cut(s) 905
BveI ACCTGC 1 cut(s) 17
Cac8I GCNNGC 2 cut(s) 249, 297
Cfr13I GGNCC 1 cut(s) 692
Csp6I GTAC 1 cut(s) 151
CviAII CATG 2 cut(s) 34, 598
CviQI GTAC 1 cut(s) 151
DdeI CTNAG 4 cut(s) 108, 291, 300, 932
DpnI GATC 8 cut(s) 173, 206, 416, 461, 716, 843, 872, 902
DpnII GATC 8 cut(s) 171, 204, 414, 459, 714, 841, 870, 900
EaeI YGGCCR 1 cut(s) 531
Eam1104I CTCTTC 8 cut(s) 89, 334, 419, 464, 491, 698, 729, 876
EarI CTCTTC 8 cut(s) 89, 334, 419, 464, 491, 698, 729, 876
Eco24I GRGCYC 1 cut(s) 644
Eco47I GGWCC 1 cut(s) 692
Eco57I CTGAAG 1 cut(s) 113
EcoO109I RGGNCCY 1 cut(s) 692
EcoRI GAATTC 2 cut(s) 57, 268
EcoT38I GRGCYC 1 cut(s) 644
Esp3I CGTCTC 1 cut(s) 104
FaeI CATG 2 cut(s) 37, 601
FaiI YATR 6 cut(s) 35, 194, 561, 599, 825, 851
FalI AAGNNNNNCTT 2 cut(s) 620, 652
FatI CATG 2 cut(s) 33, 597
FauI CCCGC 1 cut(s) 256
FbaI TGATCA 2 cut(s) 204, 714
FblI GTMKAC 1 cut(s) 525
Fnu4HI GCNGC 2 cut(s) 100, 618
FokI GGATG 2 cut(s) 118, 761
FriOI GRGCYC 1 cut(s) 644
Fsp4HI GCNGC 2 cut(s) 100, 618
GluI GCNGC 2 cut(s) 100, 618
GsuI CTGGAG 1 cut(s) 333
HaeIII GGCC 3 cut(s) 122, 533, 586
HapII CCGG 2 cut(s) 52, 197
Hin1II CATG 2 cut(s) 37, 601
HincII GTYRAC 1 cut(s) 990
HindII GTYRAC 1 cut(s) 990
HindIII AAGCTT 1 cut(s) 634
HinfI GANTC 7 cut(s) 211, 314, 346, 364, 427, 542, 578
HpaI GTTAAC 1 cut(s) 990
HpaII CCGG 2 cut(s) 52, 197
HphI GGTGA 3 cut(s) 32, 369, 613
Hpy166II GTNNAC 3 cut(s) 6, 526, 990
Hpy188I TCNGA 6 cut(s) 63, 148, 343, 369, 541, 552
Hpy188III TCNNGA 9 cut(s) 44, 208, 215, 350, 590, 718, 782, 874, 904
Hpy8I GTNNAC 3 cut(s) 6, 526, 990
Hpy99I CGWCG 1 cut(s) 179
HpyAV CCTTC 2 cut(s) 280, 683
HpyCH4III ACNGT 2 cut(s) 236, 391
HpyCH4V TGCA 5 cut(s) 161, 620, 626, 896, 920
HpyF10VI GCNNNNNNNGC 4 cut(s) 296, 623, 902, 926
HpyF3I CTNAG 4 cut(s) 108, 291, 300, 932
Hsp92II CATG 2 cut(s) 37, 601
Ksp22I TGATCA 2 cut(s) 204, 714
KspAI GTTAAC 1 cut(s) 990
Kzo9I GATC 8 cut(s) 171, 204, 414, 459, 714, 841, 870, 900
LguI GCTCTTC 2 cut(s) 89, 491
Lsp1109I GCAGC 2 cut(s) 86, 604
LweI GCATC 3 cut(s) 629, 666, 907
MaeIII GTNAC 3 cut(s) 601, 609, 662
MalI GATC 8 cut(s) 173, 206, 416, 461, 716, 843, 872, 902
MboI GATC 8 cut(s) 171, 204, 414, 459, 714, 841, 870, 900
MflI RGATCY 2 cut(s) 459, 870
MhlI GDGCHC 1 cut(s) 644
MluCI AATT 4 cut(s) 57, 268, 777, 994
MlyI GAGTC 3 cut(s) 340, 436, 587
MnlI CCTC 8 cut(s) 112, 154, 597, 730, 794, 801, 904, 954
MroXI GAANNNNTTC 1 cut(s) 546
MseI TTAA 4 cut(s) 308, 504, 864, 989
MspI CCGG 2 cut(s) 52, 197
MvnI CGCG 2 cut(s) 319, 905
MwoI GCNNNNNNNGC 4 cut(s) 296, 623, 902, 926
NdeII GATC 8 cut(s) 171, 204, 414, 459, 714, 841, 870, 900
NlaIII CATG 2 cut(s) 37, 601
NlaIV GGNNCC 2 cut(s) 461, 549
NmeAIII GCCGAG 4 cut(s) 83, 509, 562, 752
NmuCI GTSAC 2 cut(s) 601, 609
NruI TCGCGA 1 cut(s) 905
PaqCI CACCTGC 1 cut(s) 17
PciSI GCTCTTC 2 cut(s) 89, 491
PcsI WCGNNNNNNNCGW 1 cut(s) 110
PdmI GAANNNNTTC 1 cut(s) 546
PfeI GAWTC 4 cut(s) 211, 314, 364, 542
PflFI GACNNNGTC 1 cut(s) 607
PkrI GCNGC 2 cut(s) 101, 619
PleI GAGTC 3 cut(s) 340, 435, 586
PpsI GAGTC 3 cut(s) 340, 435, 586
PpuMI RGGWCCY 1 cut(s) 692
PshBI ATTAAT 1 cut(s) 504
Psp5II RGGWCCY 1 cut(s) 692
PspN4I GGNNCC 2 cut(s) 461, 549
PspPI GGNCC 1 cut(s) 692
PspPPI RGGWCCY 1 cut(s) 692
PsuI RGATCY 2 cut(s) 459, 870
PsyI GACNNNGTC 1 cut(s) 607
RruI TCGCGA 1 cut(s) 905
RsaI GTAC 1 cut(s) 152
RsaNI GTAC 1 cut(s) 151
SapI GCTCTTC 2 cut(s) 89, 491
SaqAI TTAA 4 cut(s) 308, 504, 864, 989
SatI GCNGC 2 cut(s) 100, 618
Sau3AI GATC 8 cut(s) 171, 204, 414, 459, 714, 841, 870, 900
Sau96I GGNCC 1 cut(s) 692
ScaI AGTACT 1 cut(s) 152
SchI GAGTC 3 cut(s) 340, 436, 587
SduI GDGCHC 1 cut(s) 644
SfaNI GCATC 3 cut(s) 629, 666, 907
SinI GGWCC 1 cut(s) 692
SmlI CTYRAG 3 cut(s) 637, 874, 938
SmoI CTYRAG 3 cut(s) 637, 874, 938
Sse9I AATT 4 cut(s) 57, 268, 777, 994
SsiI CCGC 1 cut(s) 249
TaaI ACNGT 2 cut(s) 236, 391
TaqI TCGA 1 cut(s) 174
TasI AATT 4 cut(s) 57, 268, 777, 994
TatI WGTACW 1 cut(s) 150
TfiI GAWTC 4 cut(s) 211, 314, 364, 542
Tru1I TTAA 4 cut(s) 308, 504, 864, 989
Tru9I TTAA 4 cut(s) 308, 504, 864, 989
TseFI GTSAC 2 cut(s) 601, 609
TseI GCWGC 2 cut(s) 99, 617
Tsp45I GTSAC 2 cut(s) 601, 609
TspDTI ATGAA 1 cut(s) 768
Tth111I GACNNNGTC 1 cut(s) 607
VpaK11BI GGWCC 1 cut(s) 692
VspI ATTAAT 1 cut(s) 504
XapI RAATTY 2 cut(s) 57, 268
XcmI CCANNNNNNNNNTGG 1 cut(s) 13
XmiI GTMKAC 1 cut(s) 525
XmnI GAANNNNTTC 1 cut(s) 546
ZrmI AGTACT 1 cut(s) 152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.