FvH4_4g35540

SPT2 chromatin protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0004232
Physical Location & Seq
Reverse (-)
32811609 .. 32814722
3114 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g35540.t1

Sequence Viewer

Length: 960 bp
ATGGGGGGTGCAGATGATGCTGACTTTCTTCGAATAAGGGAGATACTAAAGGAACGCATTCGAAATGAGAAAAAGAAGGCGTTGGACTCTGCTAATGACTGCTCGGTGGATAAGAAGAAAATACACAAGCACAGACCCTTCTTTGGCCCCTCGCAGCATTGCATTGCTCCAAGATTGATTGACGGAAAGGATGCCTTAATGCAAGAGCTCAAGATTAGTTCACATGATGTGATGAAGGTAGAGATCTTTGACACAGTTACAGAATCAGAGTCGTCTGAATCAGAGACCGAGTCGGGTTCGGCAAACGTTGCAAAGCCCAAGGAGTCTCGGGATTACTCTTTTTTGTCGAAAGAAGATGATAAAGTTGGTAAAGATATCTGTGTCTCGAAATCAAGTAATGATGAACAAACTCCGGATTCTATACAAGGAGGTTCTACGAATTTGAAGTCAGATGAGCTAGGGAGACCTCCTCAGGTAACAATGTCAGGATCTCAGAAACCCTCCTCAGCAAAGGAAGGTCTTGTGCCCAGTGATACACAAAAGAAAGCAAAGTCGATGGCAGATAAACTTAAATCTACTATGGAAAGCAAACCCTCATTGGAAAAGTCACAATCTGAAACAAAAGGTAGATTAAGAAAAACAGTTGAGAAGGTTGATGATGAGGTTTCAGACGAGGATGAAGATGAGAACGAGGATGAAGATGAGGTTGACGTTTCTTCAATCATCCAAGGACTGTTTAGAAGTATTCGTAAGAGGCCCTCAACTTTGGATTATGATGATAGAGATGATCGTGTGATGGTATCTAGCTTTGCTGATATTGAGAGAGAAGAGAGGAGAAGCGCAAAACTTGCAAGGCAGGAGGATGAAATAGAAGCTCTAAGAATTGAACAAGAAGAAAAGAAGGAAAGGTTAAGCAGAGCAAAGAAGCAGAAGCTGCTGCATAAATCCACAACCGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SPT2

Protein Analysis

320

Amino Acids

36.0

Weight (kDa)

5.28

Isoelectric Point (pI)

52.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SPT2 PF08243 204 - 304 5.8e-13 SPT2 chromatin protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 412
AclI AACGTT 1 cut(s) 306
AclWI GGATC 1 cut(s) 496
AcsI RAATTY 1 cut(s) 439
AfiI CCNNNNNNNGG 1 cut(s) 143
AgsI TTSAA 3 cut(s) 445, 720, 887
AluBI AGCT 5 cut(s) 208, 457, 807, 875, 934
AluI AGCT 5 cut(s) 208, 457, 807, 875, 934
Alw21I GWGCWC 1 cut(s) 210
Alw26I GTCTC 4 cut(s) 278, 330, 388, 457
AlwI GGATC 1 cut(s) 496
AlwNI CAGNNNCTG 1 cut(s) 934
Ama87I CYCGRG 1 cut(s) 327
Aor13HI TCCGGA 1 cut(s) 412
AoxI GGCC 2 cut(s) 145, 755
ApeKI GCWGC 3 cut(s) 154, 934, 937
ApoI RAATTY 1 cut(s) 439
ArsI GACNNNNNNTTYG 2 cut(s) 431, 463
Asp700I GAANNNNTTC 1 cut(s) 57
AspLEI GCGC 1 cut(s) 842
AspS9I GGNCC 2 cut(s) 146, 756
AsuII TTCGAA 2 cut(s) 31, 61
AvaI CYCGRG 1 cut(s) 327
AxyI CCTNAGG 1 cut(s) 471
BaeGI GKGCMC 1 cut(s) 528
BanII GRGCYC 1 cut(s) 210
Bbv12I GWGCWC 1 cut(s) 210
BbvCI CCTCAGC 1 cut(s) 505
BbvI GCAGC 3 cut(s) 166, 921, 924
BccI CCATC 2 cut(s) 550, 790
BcoDI GTCTC 4 cut(s) 278, 330, 388, 457
BfaI CTAG 2 cut(s) 458, 804
BglII AGATCT 1 cut(s) 243
BisI GCNGC 3 cut(s) 155, 935, 938
BlsI GCNGC 3 cut(s) 156, 936, 939
BmeT110I CYCGRG 1 cut(s) 327
BmgT120I GGNCC 2 cut(s) 146, 756
BmiI GGNNCC 1 cut(s) 148
BmrI ACTGGG 1 cut(s) 522
BmsI GCATC 2 cut(s) 7, 181
BmuI ACTGGG 1 cut(s) 522
BplI GAGNNNNNCTC 2 cut(s) 454, 486
Bpu10I CCTNAGC 1 cut(s) 505
Bpu14I TTCGAA 2 cut(s) 31, 61
BpuEI CTTGAG 1 cut(s) 194
BsaI GGTCTC 2 cut(s) 278, 457
BsaJI CCNNGG 2 cut(s) 318, 727
BsaWI WCCGGW 1 cut(s) 412
Bsc4I CCNNNNNNNGG 1 cut(s) 143
Bse1I ACTGG 1 cut(s) 528
Bse21I CCTNAGG 1 cut(s) 471
Bse3DI GCAATG 2 cut(s) 157, 162
BseAI TCCGGA 1 cut(s) 412
BseDI CCNNGG 2 cut(s) 318, 727
BseGI GGATG 5 cut(s) 196, 682, 700, 723, 868
BseLI CCNNNNNNNGG 1 cut(s) 143
BseMI GCAATG 2 cut(s) 157, 162
BseMII CTCAG 3 cut(s) 485, 506, 519
BseNI ACTGG 1 cut(s) 528
BseRI GAGGAG 3 cut(s) 459, 493, 847
BseSI GKGCMC 1 cut(s) 528
BseXI GCAGC 3 cut(s) 166, 921, 924
BsgI GTGCAG 1 cut(s) 30
BshFI GGCC 2 cut(s) 147, 757
BsiHKAI GWGCWC 1 cut(s) 210
BsiHKCI CYCGRG 1 cut(s) 327
BsiSI CCGG 1 cut(s) 413
BslI CCNNNNNNNGG 1 cut(s) 143
BsmAI GTCTC 4 cut(s) 278, 330, 388, 457
BsmI GAATGC 1 cut(s) 57
BsnI GGCC 2 cut(s) 147, 757
Bso31I GGTCTC 2 cut(s) 278, 457
BsoBI CYCGRG 1 cut(s) 327
Bsp119I TTCGAA 2 cut(s) 31, 61
Bsp1286I GDGCHC 2 cut(s) 210, 528
Bsp13I TCCGGA 1 cut(s) 412
Bsp143I GATC 3 cut(s) 243, 488, 787
BspANI GGCC 2 cut(s) 147, 757
BspCNI CTCAG 3 cut(s) 484, 505, 518
BspEI TCCGGA 1 cut(s) 412
BspLI GGNNCC 1 cut(s) 148
BspPI GGATC 1 cut(s) 496
BspT104I TTCGAA 2 cut(s) 31, 61
BspTNI GGTCTC 2 cut(s) 278, 457
BsrDI GCAATG 2 cut(s) 157, 162
BsrI ACTGG 1 cut(s) 528
BssECI CCNNGG 2 cut(s) 318, 727
BssMI GATC 3 cut(s) 243, 488, 787
BssT1I CCWWGG 2 cut(s) 318, 727
Bst4CI ACNGT 3 cut(s) 256, 643, 735
Bst6I CTCTTC 1 cut(s) 822
BstAPI GCANNNNNTGC 4 cut(s) 17, 308, 848, 934
BstBI TTCGAA 2 cut(s) 31, 61
BstDEI CTNAG 4 cut(s) 471, 492, 505, 878
BstF5I GGATG 5 cut(s) 196, 682, 700, 723, 868
BstHHI GCGC 1 cut(s) 842
BstKTI GATC 3 cut(s) 246, 491, 790
BstMAI GTCTC 4 cut(s) 278, 330, 388, 457
BstMBI GATC 3 cut(s) 243, 488, 787
BstMWI GCNNNNNNNGC 4 cut(s) 17, 308, 848, 934
BstSLI GKGCMC 1 cut(s) 528
BstV1I GCAGC 3 cut(s) 166, 921, 924
BstX2I RGATCY 2 cut(s) 243, 488
BstYI RGATCY 2 cut(s) 243, 488
Bsu36I CCTNAGG 1 cut(s) 471
BsuRI GGCC 2 cut(s) 147, 757
BtsCI GGATG 5 cut(s) 196, 682, 700, 723, 868
BtsIMutI CAGTG 1 cut(s) 535
CaiI CAGNNNCTG 1 cut(s) 934
CfoI GCGC 1 cut(s) 842
Cfr13I GGNCC 2 cut(s) 146, 756
CviAII CATG 1 cut(s) 224
CviJI RGCY 8 cut(s) 147, 208, 316, 457, 757, 807, 875, 934
CviKI_1 RGCY 8 cut(s) 147, 208, 316, 457, 757, 807, 875, 934
DdeI CTNAG 4 cut(s) 471, 492, 505, 878
DpnI GATC 3 cut(s) 245, 490, 789
DpnII GATC 3 cut(s) 243, 488, 787
Eam1104I CTCTTC 1 cut(s) 822
EarI CTCTTC 1 cut(s) 822
Ecl136II GAGCTC 1 cut(s) 208
Eco130I CCWWGG 2 cut(s) 318, 727
Eco24I GRGCYC 1 cut(s) 210
Eco31I GGTCTC 2 cut(s) 278, 457
Eco32I GATATC 1 cut(s) 376
Eco53kI GAGCTC 1 cut(s) 208
Eco81I CCTNAGG 1 cut(s) 471
Eco88I CYCGRG 1 cut(s) 327
EcoICRI GAGCTC 1 cut(s) 208
EcoO109I RGGNCCY 1 cut(s) 756
EcoRV GATATC 1 cut(s) 376
EcoT14I CCWWGG 2 cut(s) 318, 727
EcoT38I GRGCYC 1 cut(s) 210
ErhI CCWWGG 2 cut(s) 318, 727
FaeI CATG 1 cut(s) 227
FaiI YATR 5 cut(s) 225, 422, 581, 774, 942
FalI AAGNNNNNCTT 2 cut(s) 179, 211
FatI CATG 1 cut(s) 223
Fnu4HI GCNGC 3 cut(s) 155, 935, 938
FokI GGATG 5 cut(s) 203, 689, 707, 710, 875
FriOI GRGCYC 1 cut(s) 210
Fsp4HI GCNGC 3 cut(s) 155, 935, 938
FspBI CTAG 2 cut(s) 458, 804
GlaI GCGC 1 cut(s) 841
GluI GCNGC 3 cut(s) 155, 935, 938
HaeIII GGCC 2 cut(s) 147, 757
HapII CCGG 1 cut(s) 413
HhaI GCGC 1 cut(s) 842
Hin1II CATG 1 cut(s) 227
Hin6I GCGC 1 cut(s) 840
HinP1I GCGC 1 cut(s) 840
HincII GTYRAC 1 cut(s) 709
HindII GTYRAC 1 cut(s) 709
HinfI GANTC 7 cut(s) 86, 263, 269, 278, 290, 323, 416
HpaII CCGG 1 cut(s) 413
Hpy166II GTNNAC 2 cut(s) 221, 709
Hpy188I TCNGA 7 cut(s) 268, 277, 283, 451, 495, 616, 670
Hpy188III TCNNGA 5 cut(s) 211, 329, 385, 413, 486
Hpy8I GTNNAC 2 cut(s) 221, 709
HpyAV CCTTC 6 cut(s) 70, 148, 229, 509, 643, 895
HpyCH4III ACNGT 3 cut(s) 256, 643, 735
HpyCH4IV ACGT 2 cut(s) 306, 711
HpyCH4V TGCA 6 cut(s) 11, 162, 202, 311, 851, 940
HpyF10VI GCNNNNNNNGC 4 cut(s) 17, 308, 848, 934
HpyF3I CTNAG 4 cut(s) 471, 492, 505, 878
HpySE526I ACGT 2 cut(s) 306, 711
Hsp92II CATG 1 cut(s) 227
HspAI GCGC 1 cut(s) 840
Kpn2I TCCGGA 1 cut(s) 412
Kzo9I GATC 3 cut(s) 243, 488, 787
LmnI GCTCC 1 cut(s) 172
LpnPI CCDG 5 cut(s) 426, 458, 471, 541, 842
Lsp1109I GCAGC 3 cut(s) 166, 921, 924
LweI GCATC 2 cut(s) 7, 181
MaeI CTAG 2 cut(s) 458, 804
MaeII ACGT 2 cut(s) 306, 711
MaeIII GTNAC 3 cut(s) 256, 475, 606
MalI GATC 3 cut(s) 245, 490, 789
MboI GATC 3 cut(s) 243, 488, 787
MboII GAAGA 8 cut(s) 20, 127, 365, 692, 708, 710, 839, 905
MflI RGATCY 2 cut(s) 243, 488
MhlI GDGCHC 2 cut(s) 210, 528
MluCI AATT 2 cut(s) 439, 882
MlyI GAGTC 4 cut(s) 80, 278, 299, 332
MmeI TCCRAC 1 cut(s) 63
MroI TCCGGA 1 cut(s) 412
MroXI GAANNNNTTC 1 cut(s) 57
MseI TTAA 4 cut(s) 197, 570, 632, 911
MspI CCGG 1 cut(s) 413
Mva1269I GAATGC 1 cut(s) 57
MwoI GCNNNNNNNGC 4 cut(s) 17, 308, 848, 934
NdeII GATC 3 cut(s) 243, 488, 787
NlaIII CATG 1 cut(s) 227
NlaIV GGNNCC 1 cut(s) 148
NmuCI GTSAC 1 cut(s) 606
NspV TTCGAA 2 cut(s) 31, 61
PctI GAATGC 1 cut(s) 57
PdmI GAANNNNTTC 1 cut(s) 57
PfeI GAWTC 3 cut(s) 263, 278, 416
PflFI GACNNNGTC 1 cut(s) 289
PkrI GCNGC 3 cut(s) 156, 936, 939
PleI GAGTC 4 cut(s) 80, 277, 298, 331
PpsI GAGTC 4 cut(s) 80, 277, 298, 331
Psp124BI GAGCTC 1 cut(s) 210
Psp1406I AACGTT 1 cut(s) 306
PspN4I GGNNCC 1 cut(s) 148
PspPI GGNCC 2 cut(s) 146, 756
PstNI CAGNNNCTG 1 cut(s) 934
PsuI RGATCY 2 cut(s) 243, 488
PsyI GACNNNGTC 1 cut(s) 289
SacI GAGCTC 1 cut(s) 210
SaqAI TTAA 4 cut(s) 197, 570, 632, 911
SatI GCNGC 3 cut(s) 155, 935, 938
Sau3AI GATC 3 cut(s) 243, 488, 787
Sau96I GGNCC 2 cut(s) 146, 756
SchI GAGTC 4 cut(s) 80, 278, 299, 332
SduI GDGCHC 2 cut(s) 210, 528
SfaNI GCATC 2 cut(s) 7, 181
SfuI TTCGAA 2 cut(s) 31, 61
SmlI CTYRAG 1 cut(s) 209
SmoI CTYRAG 1 cut(s) 209
Sse9I AATT 2 cut(s) 439, 882
SspMI CTAG 2 cut(s) 458, 804
SstI GAGCTC 1 cut(s) 210
StyI CCWWGG 2 cut(s) 318, 727
TaaI ACNGT 3 cut(s) 256, 643, 735
TaiI ACGT 2 cut(s) 309, 714
TaqI TCGA 5 cut(s) 31, 61, 347, 386, 554
TaqII GACCGA 1 cut(s) 302
TasI AATT 2 cut(s) 439, 882
TfiI GAWTC 3 cut(s) 263, 278, 416
Tru1I TTAA 4 cut(s) 197, 570, 632, 911
Tru9I TTAA 4 cut(s) 197, 570, 632, 911
TscAI CASTG 1 cut(s) 535
TseFI GTSAC 1 cut(s) 606
TseI GCWGC 3 cut(s) 154, 934, 937
Tsp45I GTSAC 1 cut(s) 606
TspDTI ATGAA 5 cut(s) 248, 417, 693, 711, 879
TspGWI ACGGA 1 cut(s) 198
TspRI CASTG 1 cut(s) 535
Tth111I GACNNNGTC 1 cut(s) 289
XapI RAATTY 1 cut(s) 439
XmnI GAANNNNTTC 1 cut(s) 57
XspI CTAG 2 cut(s) 458, 804
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.