RLG00000005759

SPT2 chromatin protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0004232
Physical Location & Seq
Forward (+)
1510370 .. 1511813
1444 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005759

Sequence Viewer

Length: 972 bp
ATGGGGGTTGCAGATGAAGCTGACTTTCTTCGAATAAGGGAGGTACTAAAACAACGCATTCGAAAAGAGAGCAGGAAGGCGTTGGACTCTGCTGATGACTGCTCGGTTGAGAAGAAGAAAATACCCAAGCACAGACCCTTCTTTGGCCCCTCAGAACATTGTATTGCTCAAAGATTGATTGACGGAAGGGATGCATTAATTCAAGAGCTCAAGATTAGTTCACAGGATGTGAGGAAGGTAGAGATCCCTCCCACAACCACAGCATCAGAGTCGTCTGAATCAGAGTCCGAGTCGGGTTTGACAAAGGCTGCAAAGCTTAGCGAGTCTCGGGATTACTCTTTTTTGTCATCAGATGATGCCGATGTTCCAAAAGATTCAAAAGAAGATGCTGGAGTTGGTAAAGATATATTTGTTTCGGAATCAAGTGAGGATGAACAAACTCCGGCTTCTGTACAAGGAGCTTTTACGAATTTGAAGTCTGATAAGCTGGGAAGACTTCCTCTGAAAACAATGTCAAGATCTCAGAAACCCTCCCTAGCAAAAAAAAGTCTTGTGCCAAGTAATACACTCAAGAAAGCAAAATCGCTGGCGGATAACCTTCAATCTACTCTGGAAAGCAAACCCTCATTGGAAAAGTCACAATCTGAAACAAAGCGAAGATTGATAAAAACAGCTGAAAAGGTTGATGATAAGGATTCGGACGAGGATGAAGACAATGTAGACGTTTCTTCTATCATCCAAGGACTGTTTAGAGGTAATCGTAAAAGGCCCTCAACTTTGGATTATGACGATAGAGATGATCGTGCAATGGTGTCCAGCTTTGCTGATATTGAGAGAGAAGAAAGGAGAAGCGCAAAACTTGCAAGGCAGGAAGATGAAATAGAGGCTCTAAGAATTGAACAAGAAGAAAAAAAGGAAAGGTTAACAAAAGCAAAGAAGCAGAAGATGCAGCATAAATCCACAACTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SPT2

Protein Analysis

324

Amino Acids

36.32

Weight (kDa)

6.15

Isoelectric Point (pI)

60.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SPT2 PF08243 213 - 309 3.6e-13 SPT2 chromatin protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 720
AciI CCGC 1 cut(s) 590
AclWI GGATC 1 cut(s) 238
AcsI RAATTY 1 cut(s) 469
AfaI GTAC 2 cut(s) 45, 453
AfiI CCNNNNNNNGG 1 cut(s) 143
AgsI TTSAA 5 cut(s) 203, 378, 475, 602, 899
AluBI AGCT 7 cut(s) 20, 208, 316, 461, 487, 674, 819
AluI AGCT 7 cut(s) 20, 208, 316, 461, 487, 674, 819
Alw21I GWGCWC 1 cut(s) 210
Alw26I GTCTC 1 cut(s) 330
AlwI GGATC 1 cut(s) 238
Ama87I CYCGRG 1 cut(s) 327
AoxI GGCC 2 cut(s) 145, 767
ApeKI GCWGC 2 cut(s) 308, 949
ApoI RAATTY 1 cut(s) 469
ArsI GACNNNNNNTTYG 2 cut(s) 461, 493
AseI ATTAAT 1 cut(s) 197
AspLEI GCGC 1 cut(s) 854
AspS9I GGNCC 2 cut(s) 146, 768
AsuII TTCGAA 2 cut(s) 31, 61
AvaI CYCGRG 1 cut(s) 327
BanII GRGCYC 1 cut(s) 210
BbsI GAAGAC 2 cut(s) 499, 717
Bbv12I GWGCWC 1 cut(s) 210
BbvI GCAGC 2 cut(s) 295, 961
BcgI CGANNNNNNTGC 2 cut(s) 252, 286
BcoDI GTCTC 1 cut(s) 330
BfaI CTAG 1 cut(s) 536
BglII AGATCT 1 cut(s) 518
BisI GCNGC 2 cut(s) 309, 950
BlpI GCTNAGC 1 cut(s) 317
BlsI GCNGC 2 cut(s) 310, 951
BmeT110I CYCGRG 1 cut(s) 327
BmgT120I GGNCC 2 cut(s) 146, 768
BmiI GGNNCC 1 cut(s) 148
BmsI GCATC 5 cut(s) 181, 272, 346, 376, 936
BpiI GAAGAC 2 cut(s) 499, 717
BpmI CTGGAG 1 cut(s) 411
Bpu1102I GCTNAGC 1 cut(s) 317
Bpu14I TTCGAA 2 cut(s) 31, 61
BpuEI CTTGAG 2 cut(s) 194, 554
BsaJI CCNNGG 1 cut(s) 739
Bsc4I CCNNNNNNNGG 1 cut(s) 143
Bse3DI GCAATG 1 cut(s) 813
BseDI CCNNGG 1 cut(s) 739
BseGI GGATG 5 cut(s) 196, 232, 436, 712, 735
BseLI CCNNNNNNNGG 1 cut(s) 143
BseMI GCAATG 1 cut(s) 813
BseMII CTCAG 3 cut(s) 165, 536, 957
BseXI GCAGC 2 cut(s) 295, 961
BseYI CCCAGC 1 cut(s) 487
BshFI GGCC 2 cut(s) 147, 769
BsiHKAI GWGCWC 1 cut(s) 210
BsiHKCI CYCGRG 1 cut(s) 327
BsiSI CCGG 1 cut(s) 443
BslI CCNNNNNNNGG 1 cut(s) 143
BsmAI GTCTC 1 cut(s) 330
BsmI GAATGC 1 cut(s) 57
BsnI GGCC 2 cut(s) 147, 769
BsoBI CYCGRG 1 cut(s) 327
Bsp119I TTCGAA 2 cut(s) 31, 61
Bsp1286I GDGCHC 1 cut(s) 210
Bsp1407I TGTACA 1 cut(s) 451
Bsp143I GATC 3 cut(s) 243, 518, 799
Bsp1720I GCTNAGC 1 cut(s) 317
BspACI CCGC 1 cut(s) 590
BspANI GGCC 2 cut(s) 147, 769
BspCNI CTCAG 3 cut(s) 164, 535, 958
BspLI GGNNCC 1 cut(s) 148
BspPI GGATC 1 cut(s) 238
BspT104I TTCGAA 2 cut(s) 31, 61
BsrDI GCAATG 1 cut(s) 813
BsrGI TGTACA 1 cut(s) 451
BssECI CCNNGG 1 cut(s) 739
BssMI GATC 3 cut(s) 243, 518, 799
BssT1I CCWWGG 1 cut(s) 739
Bst4CI ACNGT 1 cut(s) 747
BstAPI GCANNNNNTGC 2 cut(s) 860, 946
BstAUI TGTACA 1 cut(s) 451
BstBI TTCGAA 2 cut(s) 31, 61
BstC8I GCNNGC 1 cut(s) 588
BstDEI CTNAG 5 cut(s) 151, 317, 522, 890, 966
BstF5I GGATG 5 cut(s) 196, 232, 436, 712, 735
BstHHI GCGC 1 cut(s) 854
BstKTI GATC 3 cut(s) 246, 521, 802
BstMAI GTCTC 1 cut(s) 330
BstMBI GATC 3 cut(s) 243, 518, 799
BstMWI GCNNNNNNNGC 3 cut(s) 17, 860, 946
BstV1I GCAGC 2 cut(s) 295, 961
BstV2I GAAGAC 2 cut(s) 499, 717
BstX2I RGATCY 2 cut(s) 243, 518
BstYI RGATCY 2 cut(s) 243, 518
BsuRI GGCC 2 cut(s) 147, 769
BtsCI GGATG 5 cut(s) 196, 232, 436, 712, 735
Cac8I GCNNGC 1 cut(s) 588
CfoI GCGC 1 cut(s) 854
Cfr13I GGNCC 2 cut(s) 146, 768
Csp6I GTAC 2 cut(s) 44, 452
CviQI GTAC 2 cut(s) 44, 452
DdeI CTNAG 5 cut(s) 151, 317, 522, 890, 966
DpnI GATC 3 cut(s) 245, 520, 801
DpnII GATC 3 cut(s) 243, 518, 799
EciI GGCGGA 1 cut(s) 605
Ecl136II GAGCTC 1 cut(s) 208
Eco130I CCWWGG 1 cut(s) 739
Eco24I GRGCYC 1 cut(s) 210
Eco53kI GAGCTC 1 cut(s) 208
Eco88I CYCGRG 1 cut(s) 327
EcoICRI GAGCTC 1 cut(s) 208
EcoO109I RGGNCCY 1 cut(s) 768
EcoT14I CCWWGG 1 cut(s) 739
EcoT22I ATGCAT 1 cut(s) 196
EcoT38I GRGCYC 1 cut(s) 210
ErhI CCWWGG 1 cut(s) 739
FaiI YATR 3 cut(s) 407, 786, 954
FblI GTMKAC 1 cut(s) 720
Fnu4HI GCNGC 2 cut(s) 309, 950
FokI GGATG 5 cut(s) 203, 239, 443, 719, 722
FriOI GRGCYC 1 cut(s) 210
Fsp4HI GCNGC 2 cut(s) 309, 950
FspBI CTAG 1 cut(s) 536
GlaI GCGC 1 cut(s) 853
GluI GCNGC 2 cut(s) 309, 950
GsaI CCCAGC 1 cut(s) 491
GsuI CTGGAG 1 cut(s) 411
HaeIII GGCC 2 cut(s) 147, 769
HapII CCGG 1 cut(s) 443
HhaI GCGC 1 cut(s) 854
Hin6I GCGC 1 cut(s) 852
HinP1I GCGC 1 cut(s) 852
HincII GTYRAC 1 cut(s) 924
HindII GTYRAC 1 cut(s) 924
HindIII AAGCTT 1 cut(s) 314
HinfI GANTC 9 cut(s) 86, 269, 278, 284, 290, 323, 374, 419, 695
HpaI GTTAAC 1 cut(s) 924
HpaII CCGG 1 cut(s) 443
Hpy166II GTNNAC 3 cut(s) 221, 721, 924
Hpy188III TCNNGA 6 cut(s) 203, 211, 329, 516, 571, 611
Hpy8I GTNNAC 3 cut(s) 221, 721, 924
HpyAV CCTTC 5 cut(s) 70, 148, 180, 229, 608
HpyCH4III ACNGT 1 cut(s) 747
HpyCH4IV ACGT 1 cut(s) 723
HpyCH4V TGCA 6 cut(s) 11, 194, 311, 806, 863, 949
HpyF10VI GCNNNNNNNGC 3 cut(s) 17, 860, 946
HpyF3I CTNAG 5 cut(s) 151, 317, 522, 890, 966
HpySE526I ACGT 1 cut(s) 723
HspAI GCGC 1 cut(s) 852
KspAI GTTAAC 1 cut(s) 924
Kzo9I GATC 3 cut(s) 243, 518, 799
LmnI GCTCC 1 cut(s) 458
LpnPI CCDG 9 cut(s) 58, 209, 375, 456, 473, 572, 596, 829, 854
Lsp1109I GCAGC 2 cut(s) 295, 961
LweI GCATC 5 cut(s) 181, 272, 346, 376, 936
MaeI CTAG 1 cut(s) 536
MaeII ACGT 1 cut(s) 723
MaeIII GTNAC 1 cut(s) 636
MalI GATC 3 cut(s) 245, 520, 801
MboI GATC 3 cut(s) 243, 518, 799
MflI RGATCY 2 cut(s) 243, 518
MhlI GDGCHC 1 cut(s) 210
MluCI AATT 3 cut(s) 198, 469, 894
MlyI GAGTC 5 cut(s) 80, 278, 293, 299, 332
MmeI TCCRAC 1 cut(s) 63
Mph1103I ATGCAT 1 cut(s) 196
MseI TTAA 2 cut(s) 197, 923
MspA1I CMGCKG 1 cut(s) 674
MspI CCGG 1 cut(s) 443
Mva1269I GAATGC 1 cut(s) 57
MwoI GCNNNNNNNGC 3 cut(s) 17, 860, 946
NdeII GATC 3 cut(s) 243, 518, 799
NlaIV GGNNCC 1 cut(s) 148
NmuCI GTSAC 1 cut(s) 636
NsiI ATGCAT 1 cut(s) 196
NspV TTCGAA 2 cut(s) 31, 61
PctI GAATGC 1 cut(s) 57
PfeI GAWTC 4 cut(s) 278, 374, 419, 695
PkrI GCNGC 2 cut(s) 310, 951
PleI GAGTC 5 cut(s) 80, 277, 292, 298, 331
PpsI GAGTC 5 cut(s) 80, 277, 292, 298, 331
PshBI ATTAAT 1 cut(s) 197
Psp124BI GAGCTC 1 cut(s) 210
PspFI CCCAGC 1 cut(s) 487
PspN4I GGNNCC 1 cut(s) 148
PspPI GGNCC 2 cut(s) 146, 768
PsuI RGATCY 2 cut(s) 243, 518
PvuII CAGCTG 1 cut(s) 674
RsaI GTAC 2 cut(s) 45, 453
RsaNI GTAC 2 cut(s) 44, 452
SacI GAGCTC 1 cut(s) 210
SaqAI TTAA 2 cut(s) 197, 923
SatI GCNGC 2 cut(s) 309, 950
Sau3AI GATC 3 cut(s) 243, 518, 799
Sau96I GGNCC 2 cut(s) 146, 768
SchI GAGTC 5 cut(s) 80, 278, 293, 299, 332
SduI GDGCHC 1 cut(s) 210
SfaNI GCATC 5 cut(s) 181, 272, 346, 376, 936
SfuI TTCGAA 2 cut(s) 31, 61
SmlI CTYRAG 2 cut(s) 209, 569
SmoI CTYRAG 2 cut(s) 209, 569
Sse9I AATT 3 cut(s) 198, 469, 894
SsiI CCGC 1 cut(s) 590
SspMI CTAG 1 cut(s) 536
SstI GAGCTC 1 cut(s) 210
StyI CCWWGG 1 cut(s) 739
TaaI ACNGT 1 cut(s) 747
TaiI ACGT 1 cut(s) 726
TaqI TCGA 2 cut(s) 31, 61
TasI AATT 3 cut(s) 198, 469, 894
TatI WGTACW 1 cut(s) 451
TfiI GAWTC 4 cut(s) 278, 374, 419, 695
Tru1I TTAA 2 cut(s) 197, 923
Tru9I TTAA 2 cut(s) 197, 923
TseFI GTSAC 1 cut(s) 636
TseI GCWGC 2 cut(s) 308, 949
Tsp45I GTSAC 1 cut(s) 636
TspDTI ATGAA 4 cut(s) 30, 447, 723, 891
TspGWI ACGGA 1 cut(s) 198
VspI ATTAAT 1 cut(s) 197
XapI RAATTY 1 cut(s) 469
XmiI GTMKAC 1 cut(s) 720
XspI CTAG 1 cut(s) 536
Zsp2I ATGCAT 1 cut(s) 196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.