Rh4DG428600

SPT2 chromatin protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0004232
Physical Location & Seq
Reverse (-)
63365515 .. 63367857
2343 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG428600.1

Sequence Viewer

Length: 984 bp
ATGGGGGTTGCAGATGAAGCTGACTTTCTTCGAATAAGGGAGGTACTAAAACAACGCATTCGAAAAGAGAGCAGGAAGCCGTTGGACTCTGCTGATGACTGCTCGGTTGAGAAGAAGAAAATACCCAAGCACAGACCCTTCTTTGGCCCCTCAGAACATTGTATTTCTCAAAGATTGATTGACGGAAGGGATGCATTAATTCAAGAGCTCAAGATTAGTTCACAGGATGTGAGGAAGGTAGAGATCCCTGCCACAACCACAGCATCAGAGTCGTCTGAAACAGAGTCCGAATCGGGTTTGACAAAGGCTGCAAAGCTCGGCGAGTCTCGGGATTACTCTTTTTTGTCATCAGATGATGCCGATGTTCCAAAAGATTCAAAAGAACATGCTGGAGTTGGTAAAGAAATATTTGTTTCGGAATCAAGTGAGGATGAACAAACTCCGGCTTCTGTACAAGGAGCTTTTACGAATTTGAAGTCTGATAAGCTGGGAAGACTTCCTCTGAAAACAATGTCAAGATCTCAGAAACCCTCCCTAGCAAAGAAAAGTCTTGTGCCAAGTAATACACTCAAGAAAGCAAAATCGCTGGCGGATAACCTTCAATCTACTCTGGAAAGCAAACCCTCATTGGAAAAGTCACAATCTGAAACAAAGCGAAGATTGATAAAAACAGCTGAAAAGGTTGATGATAAGGATTCGGATGAGGATGAGGACGAGGATGAAGACAATGTTGACGTTTCTTCTATCATCCAAGGACTGTTTAGAGGTAATCGTAAGAGGCCCTCAACTTTGGATTATGACGATAGAGATGATCATGCAATGGTGTCCAGCTTTGCTGATATTGAGAGAGAAGAAAGGAGAAGCGCAAAACTTGCAAGGCAGGAAGATGAAATAGAGGCTCTAAGAATTGAACAAGAAGAAAAGAAGGAAAGGTTAAGAAGAGCAAAGAAGCAGAAGATGCTGCATAAATCCACAACTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SPT2

Protein Analysis

327

Amino Acids

36.89

Weight (kDa)

5.82

Isoelectric Point (pI)

62.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SPT2 PF08243 213 - 314 6.6e-14 SPT2 chromatin protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 590
AclWI GGATC 1 cut(s) 238
AcsI RAATTY 1 cut(s) 469
AfaI GTAC 2 cut(s) 45, 453
AfiI CCNNNNNNNGG 1 cut(s) 143
AgsI TTSAA 5 cut(s) 203, 378, 475, 602, 911
AluBI AGCT 7 cut(s) 20, 208, 316, 461, 487, 674, 831
AluI AGCT 7 cut(s) 20, 208, 316, 461, 487, 674, 831
Alw21I GWGCWC 1 cut(s) 210
Alw26I GTCTC 1 cut(s) 330
AlwI GGATC 1 cut(s) 238
Ama87I CYCGRG 1 cut(s) 327
AoxI GGCC 2 cut(s) 145, 779
ApeKI GCWGC 2 cut(s) 308, 961
ApoI RAATTY 1 cut(s) 469
ArsI GACNNNNNNTTYG 2 cut(s) 461, 493
AseI ATTAAT 1 cut(s) 197
AspLEI GCGC 1 cut(s) 866
AspS9I GGNCC 2 cut(s) 146, 780
AsuII TTCGAA 2 cut(s) 31, 61
AvaI CYCGRG 1 cut(s) 327
BanII GRGCYC 1 cut(s) 210
BbsI GAAGAC 2 cut(s) 499, 729
Bbv12I GWGCWC 1 cut(s) 210
BbvI GCAGC 2 cut(s) 295, 948
BceAI ACGGC 1 cut(s) 64
BcgI CGANNNNNNTGC 2 cut(s) 252, 286
BclI TGATCA 1 cut(s) 811
BcoDI GTCTC 1 cut(s) 330
BfaI CTAG 1 cut(s) 536
BglII AGATCT 1 cut(s) 518
BisI GCNGC 2 cut(s) 309, 962
BlsI GCNGC 2 cut(s) 310, 963
BmeT110I CYCGRG 1 cut(s) 327
BmgT120I GGNCC 2 cut(s) 146, 780
BmiI GGNNCC 1 cut(s) 148
BmsI GCATC 4 cut(s) 181, 272, 346, 948
BpiI GAAGAC 2 cut(s) 499, 729
BpmI CTGGAG 1 cut(s) 411
Bpu14I TTCGAA 2 cut(s) 31, 61
BpuEI CTTGAG 2 cut(s) 194, 554
BsaJI CCNNGG 1 cut(s) 751
Bsc4I CCNNNNNNNGG 1 cut(s) 143
Bse3DI GCAATG 1 cut(s) 825
BseDI CCNNGG 1 cut(s) 751
BseGI GGATG 7 cut(s) 196, 232, 436, 706, 712, 724, 747
BseLI CCNNNNNNNGG 1 cut(s) 143
BseMI GCAATG 1 cut(s) 825
BseMII CTCAG 3 cut(s) 165, 536, 969
BseXI GCAGC 2 cut(s) 295, 948
BseYI CCCAGC 1 cut(s) 487
BshFI GGCC 2 cut(s) 147, 781
BsiHKAI GWGCWC 1 cut(s) 210
BsiHKCI CYCGRG 1 cut(s) 327
BsiSI CCGG 1 cut(s) 443
BslI CCNNNNNNNGG 1 cut(s) 143
BsmAI GTCTC 1 cut(s) 330
BsmI GAATGC 1 cut(s) 57
BsnI GGCC 2 cut(s) 147, 781
BsoBI CYCGRG 1 cut(s) 327
Bsp119I TTCGAA 2 cut(s) 31, 61
Bsp1286I GDGCHC 1 cut(s) 210
Bsp1407I TGTACA 1 cut(s) 451
Bsp143I GATC 3 cut(s) 243, 518, 811
BspACI CCGC 1 cut(s) 590
BspANI GGCC 2 cut(s) 147, 781
BspCNI CTCAG 3 cut(s) 164, 535, 970
BspLI GGNNCC 1 cut(s) 148
BspPI GGATC 1 cut(s) 238
BspQI GCTCTTC 1 cut(s) 934
BspT104I TTCGAA 2 cut(s) 31, 61
BsrDI GCAATG 1 cut(s) 825
BsrGI TGTACA 1 cut(s) 451
BssECI CCNNGG 1 cut(s) 751
BssMI GATC 3 cut(s) 243, 518, 811
BssT1I CCWWGG 1 cut(s) 751
Bst4CI ACNGT 1 cut(s) 759
Bst6I CTCTTC 1 cut(s) 934
BstAPI GCANNNNNTGC 2 cut(s) 872, 958
BstAUI TGTACA 1 cut(s) 451
BstBI TTCGAA 2 cut(s) 31, 61
BstC8I GCNNGC 1 cut(s) 588
BstDEI CTNAG 4 cut(s) 151, 522, 902, 978
BstF5I GGATG 7 cut(s) 196, 232, 436, 706, 712, 724, 747
BstHHI GCGC 1 cut(s) 866
BstKTI GATC 3 cut(s) 246, 521, 814
BstMAI GTCTC 1 cut(s) 330
BstMBI GATC 3 cut(s) 243, 518, 811
BstMWI GCNNNNNNNGC 3 cut(s) 17, 872, 958
BstNSI RCATGY 1 cut(s) 389
BstV1I GCAGC 2 cut(s) 295, 948
BstV2I GAAGAC 2 cut(s) 499, 729
BstX2I RGATCY 2 cut(s) 243, 518
BstYI RGATCY 2 cut(s) 243, 518
BsuRI GGCC 2 cut(s) 147, 781
BtsCI GGATG 7 cut(s) 196, 232, 436, 706, 712, 724, 747
Cac8I GCNNGC 1 cut(s) 588
CfoI GCGC 1 cut(s) 866
Cfr13I GGNCC 2 cut(s) 146, 780
Csp6I GTAC 2 cut(s) 44, 452
CviAII CATG 2 cut(s) 386, 815
CviQI GTAC 2 cut(s) 44, 452
DdeI CTNAG 4 cut(s) 151, 522, 902, 978
DpnI GATC 3 cut(s) 245, 520, 813
DpnII GATC 3 cut(s) 243, 518, 811
Eam1104I CTCTTC 1 cut(s) 934
EarI CTCTTC 1 cut(s) 934
EciI GGCGGA 1 cut(s) 605
Ecl136II GAGCTC 1 cut(s) 208
Eco130I CCWWGG 1 cut(s) 751
Eco24I GRGCYC 1 cut(s) 210
Eco53kI GAGCTC 1 cut(s) 208
Eco88I CYCGRG 1 cut(s) 327
EcoICRI GAGCTC 1 cut(s) 208
EcoO109I RGGNCCY 1 cut(s) 780
EcoT14I CCWWGG 1 cut(s) 751
EcoT22I ATGCAT 1 cut(s) 196
EcoT38I GRGCYC 1 cut(s) 210
ErhI CCWWGG 1 cut(s) 751
FaeI CATG 2 cut(s) 389, 818
FaiI YATR 4 cut(s) 387, 798, 816, 966
FatI CATG 2 cut(s) 385, 814
FbaI TGATCA 1 cut(s) 811
Fnu4HI GCNGC 2 cut(s) 309, 962
FokI GGATG 7 cut(s) 203, 239, 443, 713, 719, 731, 734
FriOI GRGCYC 1 cut(s) 210
Fsp4HI GCNGC 2 cut(s) 309, 962
FspBI CTAG 1 cut(s) 536
GlaI GCGC 1 cut(s) 865
GluI GCNGC 2 cut(s) 309, 962
GsaI CCCAGC 1 cut(s) 491
GsuI CTGGAG 1 cut(s) 411
HaeIII GGCC 2 cut(s) 147, 781
HapII CCGG 1 cut(s) 443
HhaI GCGC 1 cut(s) 866
Hin1II CATG 2 cut(s) 389, 818
Hin6I GCGC 1 cut(s) 864
HinP1I GCGC 1 cut(s) 864
HincII GTYRAC 1 cut(s) 733
HindII GTYRAC 1 cut(s) 733
HinfI GANTC 8 cut(s) 86, 269, 284, 290, 323, 374, 419, 695
HpaII CCGG 1 cut(s) 443
Hpy166II GTNNAC 2 cut(s) 221, 733
Hpy188III TCNNGA 6 cut(s) 203, 211, 329, 516, 571, 611
Hpy8I GTNNAC 2 cut(s) 221, 733
HpyAV CCTTC 5 cut(s) 148, 180, 229, 608, 919
HpyCH4III ACNGT 1 cut(s) 759
HpyCH4IV ACGT 1 cut(s) 735
HpyCH4V TGCA 6 cut(s) 11, 194, 311, 818, 875, 964
HpyF10VI GCNNNNNNNGC 3 cut(s) 17, 872, 958
HpyF3I CTNAG 4 cut(s) 151, 522, 902, 978
HpySE526I ACGT 1 cut(s) 735
Hsp92II CATG 2 cut(s) 389, 818
HspAI GCGC 1 cut(s) 864
Ksp22I TGATCA 1 cut(s) 811
Kzo9I GATC 3 cut(s) 243, 518, 811
LguI GCTCTTC 1 cut(s) 934
LmnI GCTCC 1 cut(s) 458
Lsp1109I GCAGC 2 cut(s) 295, 948
LweI GCATC 4 cut(s) 181, 272, 346, 948
MaeI CTAG 1 cut(s) 536
MaeII ACGT 1 cut(s) 735
MaeIII GTNAC 1 cut(s) 636
MalI GATC 3 cut(s) 245, 520, 813
MboI GATC 3 cut(s) 243, 518, 811
MflI RGATCY 2 cut(s) 243, 518
MhlI GDGCHC 1 cut(s) 210
MluCI AATT 3 cut(s) 198, 469, 906
MlyI GAGTC 4 cut(s) 80, 278, 293, 332
MmeI TCCRAC 1 cut(s) 63
Mph1103I ATGCAT 1 cut(s) 196
MseI TTAA 2 cut(s) 197, 935
MspA1I CMGCKG 1 cut(s) 674
MspI CCGG 1 cut(s) 443
Mva1269I GAATGC 1 cut(s) 57
MwoI GCNNNNNNNGC 3 cut(s) 17, 872, 958
NdeII GATC 3 cut(s) 243, 518, 811
NlaIII CATG 2 cut(s) 389, 818
NlaIV GGNNCC 1 cut(s) 148
NmeAIII GCCGAG 1 cut(s) 297
NmuCI GTSAC 1 cut(s) 636
NsiI ATGCAT 1 cut(s) 196
NspI RCATGY 1 cut(s) 389
NspV TTCGAA 2 cut(s) 31, 61
PciSI GCTCTTC 1 cut(s) 934
PctI GAATGC 1 cut(s) 57
PfeI GAWTC 4 cut(s) 290, 374, 419, 695
PkrI GCNGC 2 cut(s) 310, 963
PleI GAGTC 4 cut(s) 80, 277, 292, 331
PpsI GAGTC 4 cut(s) 80, 277, 292, 331
PshBI ATTAAT 1 cut(s) 197
Psp124BI GAGCTC 1 cut(s) 210
PspFI CCCAGC 1 cut(s) 487
PspN4I GGNNCC 1 cut(s) 148
PspPI GGNCC 2 cut(s) 146, 780
PsuI RGATCY 2 cut(s) 243, 518
PvuII CAGCTG 1 cut(s) 674
RsaI GTAC 2 cut(s) 45, 453
RsaNI GTAC 2 cut(s) 44, 452
SacI GAGCTC 1 cut(s) 210
SapI GCTCTTC 1 cut(s) 934
SaqAI TTAA 2 cut(s) 197, 935
SatI GCNGC 2 cut(s) 309, 962
Sau3AI GATC 3 cut(s) 243, 518, 811
Sau96I GGNCC 2 cut(s) 146, 780
SchI GAGTC 4 cut(s) 80, 278, 293, 332
SduI GDGCHC 1 cut(s) 210
SfaNI GCATC 4 cut(s) 181, 272, 346, 948
SfuI TTCGAA 2 cut(s) 31, 61
SmlI CTYRAG 2 cut(s) 209, 569
SmoI CTYRAG 2 cut(s) 209, 569
Sse9I AATT 3 cut(s) 198, 469, 906
SsiI CCGC 1 cut(s) 590
SspI AATATT 1 cut(s) 408
SspMI CTAG 1 cut(s) 536
SstI GAGCTC 1 cut(s) 210
StyI CCWWGG 1 cut(s) 751
TaaI ACNGT 1 cut(s) 759
TaiI ACGT 1 cut(s) 738
TaqI TCGA 2 cut(s) 31, 61
TasI AATT 3 cut(s) 198, 469, 906
TatI WGTACW 1 cut(s) 451
TfiI GAWTC 4 cut(s) 290, 374, 419, 695
Tru1I TTAA 2 cut(s) 197, 935
Tru9I TTAA 2 cut(s) 197, 935
TseFI GTSAC 1 cut(s) 636
TseI GCWGC 2 cut(s) 308, 961
Tsp45I GTSAC 1 cut(s) 636
TspDTI ATGAA 4 cut(s) 30, 447, 735, 903
TspGWI ACGGA 1 cut(s) 198
VspI ATTAAT 1 cut(s) 197
XapI RAATTY 1 cut(s) 469
XceI RCATGY 1 cut(s) 389
XspI CTAG 1 cut(s) 536
Zsp2I ATGCAT 1 cut(s) 196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.