Rroxscaffold_5G00385700

SPT2 chromatin protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0004232
Physical Location & Seq
Reverse (-)
64738119 .. 64739579
1461 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00385700.1

Sequence Viewer

Length: 909 bp
ATGGGGGTTGCAGATGAAGCTGACTTTCTTCGAATAAGGGAGGTACTAAAACAACGCATTCGAAAAGAGAGCAGGAAGGCGTTGGACTCTGCTGATGACTGCTCGGTTGAGAAGAAGAAAGCACCCAAGCACAGACCCTTCTTTGGCCCCTCAGAACATTGTATTGCTCAAAGATTGATTGACGGAAGGGATGCATTAATTCAAGAGCTCAAGATTAGTTCACAGGATGTGAGGATGGTAGAGATCCCTGCCACAACCACAGCATCAGAGTCGTCTGAATCAGAGTCCGAGTCGGGTTTGACAAAGGCTGCAAAGCTCAGCGAGTCTCGGGATTACTCTTTTTTGTCATCAGATGATGCCGATGTTCCAAAAGCTTCAAAAGAAGAAGCTGGAGTTAGTAAAGATATATTTGTTTCAGAATCAAGTGATGATGAACAAACTCCGGCTTCTAAACCCTCCCTAGCCAAGAAAAGTCATGTGCCAAGTAATACACTCAAGAAAGCAAAATCGCTGGCGGATAACCTTCAATCTACTCTGGAAAGCAAACCCTCATCGGAAAAGTCACAATCTGAAACAAAGCGAAGATTTATAAAAACAGGTGAAAAGGTTAATGATAAGGATTCGGACGAGGACGAGGACAAGGATGAAGACAATGTTGACGTTTCTTCTATCATCCAAGGACTGTTTAGAGGTAATCGTAAGAGGCCCTCAACTTTGGATTATGACGATAGAGATGATCGTGCAATGGTGTCCAGCTTTGCTGATATTGAGAGAGAAGAAAGGAGAAGCGCAAAACTTGCAAGGCAGGAAGATGAAATAGAGGCTCTAAGAATTGAACAAGAAGAAAAGAAGGAAAGGTTAAGAAGAGCAAAGAAGCAGAAGATGCTGCATAAATCCACAACTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SPT2

Protein Analysis

302

Amino Acids

34.05

Weight (kDa)

5.6

Isoelectric Point (pI)

65.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SPT2 PF08243 183 - 289 4.6e-14 SPT2 chromatin protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 590
AciI CCGC 1 cut(s) 515
AclWI GGATC 1 cut(s) 238
AfaI GTAC 1 cut(s) 45
AfiI CCNNNNNNNGG 1 cut(s) 143
AgsI TTSAA 4 cut(s) 203, 378, 527, 836
AluBI AGCT 6 cut(s) 20, 208, 316, 374, 389, 756
AluI AGCT 6 cut(s) 20, 208, 316, 374, 389, 756
Alw21I GWGCWC 1 cut(s) 210
Alw26I GTCTC 1 cut(s) 330
AlwI GGATC 1 cut(s) 238
Ama87I CYCGRG 1 cut(s) 327
AoxI GGCC 2 cut(s) 145, 704
ApeKI GCWGC 2 cut(s) 308, 886
AseI ATTAAT 1 cut(s) 197
AspLEI GCGC 1 cut(s) 791
AspS9I GGNCC 2 cut(s) 146, 705
AsuHPI GGTGA 1 cut(s) 611
AsuII TTCGAA 2 cut(s) 31, 61
AvaI CYCGRG 1 cut(s) 327
BanII GRGCYC 1 cut(s) 210
BbsI GAAGAC 1 cut(s) 654
Bbv12I GWGCWC 1 cut(s) 210
BbvI GCAGC 2 cut(s) 295, 873
BccI CCATC 1 cut(s) 229
BcgI CGANNNNNNTGC 2 cut(s) 252, 286
BcoDI GTCTC 1 cut(s) 330
BfaI CTAG 1 cut(s) 461
BisI GCNGC 2 cut(s) 309, 887
BlpI GCTNAGC 1 cut(s) 317
BlsI GCNGC 2 cut(s) 310, 888
BmeT110I CYCGRG 1 cut(s) 327
BmgT120I GGNCC 2 cut(s) 146, 705
BmiI GGNNCC 1 cut(s) 148
BmsI GCATC 4 cut(s) 181, 272, 346, 873
BpiI GAAGAC 1 cut(s) 654
BpmI CTGGAG 1 cut(s) 411
Bpu1102I GCTNAGC 1 cut(s) 317
Bpu14I TTCGAA 2 cut(s) 31, 61
BpuEI CTTGAG 2 cut(s) 194, 479
BsaJI CCNNGG 1 cut(s) 676
Bsc4I CCNNNNNNNGG 1 cut(s) 143
Bse3DI GCAATG 1 cut(s) 750
BseDI CCNNGG 1 cut(s) 676
BseGI GGATG 5 cut(s) 196, 232, 240, 649, 672
BseLI CCNNNNNNNGG 1 cut(s) 143
BseMI GCAATG 1 cut(s) 750
BseMII CTCAG 3 cut(s) 165, 331, 894
BseXI GCAGC 2 cut(s) 295, 873
BshFI GGCC 2 cut(s) 147, 706
BsiHKAI GWGCWC 1 cut(s) 210
BsiHKCI CYCGRG 1 cut(s) 327
BsiSI CCGG 1 cut(s) 443
BslI CCNNNNNNNGG 1 cut(s) 143
BsmAI GTCTC 1 cut(s) 330
BsmI GAATGC 1 cut(s) 57
BsnI GGCC 2 cut(s) 147, 706
BsoBI CYCGRG 1 cut(s) 327
Bsp119I TTCGAA 2 cut(s) 31, 61
Bsp1286I GDGCHC 1 cut(s) 210
Bsp143I GATC 2 cut(s) 243, 736
Bsp1720I GCTNAGC 1 cut(s) 317
BspACI CCGC 1 cut(s) 515
BspANI GGCC 2 cut(s) 147, 706
BspCNI CTCAG 3 cut(s) 164, 330, 895
BspLI GGNNCC 1 cut(s) 148
BspPI GGATC 1 cut(s) 238
BspQI GCTCTTC 1 cut(s) 859
BspT104I TTCGAA 2 cut(s) 31, 61
BsrDI GCAATG 1 cut(s) 750
BssECI CCNNGG 1 cut(s) 676
BssMI GATC 2 cut(s) 243, 736
BssT1I CCWWGG 1 cut(s) 676
Bst4CI ACNGT 1 cut(s) 684
Bst6I CTCTTC 1 cut(s) 859
BstAPI GCANNNNNTGC 2 cut(s) 797, 883
BstBI TTCGAA 2 cut(s) 31, 61
BstC8I GCNNGC 1 cut(s) 513
BstDEI CTNAG 4 cut(s) 151, 317, 827, 903
BstF5I GGATG 5 cut(s) 196, 232, 240, 649, 672
BstHHI GCGC 1 cut(s) 791
BstKTI GATC 2 cut(s) 246, 739
BstMAI GTCTC 1 cut(s) 330
BstMBI GATC 2 cut(s) 243, 736
BstMWI GCNNNNNNNGC 3 cut(s) 17, 797, 883
BstV1I GCAGC 2 cut(s) 295, 873
BstV2I GAAGAC 1 cut(s) 654
BstX2I RGATCY 1 cut(s) 243
BstYI RGATCY 1 cut(s) 243
BsuRI GGCC 2 cut(s) 147, 706
BtsCI GGATG 5 cut(s) 196, 232, 240, 649, 672
Cac8I GCNNGC 1 cut(s) 513
CfoI GCGC 1 cut(s) 791
Cfr13I GGNCC 2 cut(s) 146, 705
Csp6I GTAC 1 cut(s) 44
CviAII CATG 1 cut(s) 476
CviQI GTAC 1 cut(s) 44
DdeI CTNAG 4 cut(s) 151, 317, 827, 903
DpnI GATC 2 cut(s) 245, 738
DpnII GATC 2 cut(s) 243, 736
Eam1104I CTCTTC 1 cut(s) 859
EarI CTCTTC 1 cut(s) 859
EciI GGCGGA 1 cut(s) 530
Ecl136II GAGCTC 1 cut(s) 208
Eco130I CCWWGG 1 cut(s) 676
Eco24I GRGCYC 1 cut(s) 210
Eco53kI GAGCTC 1 cut(s) 208
Eco88I CYCGRG 1 cut(s) 327
EcoICRI GAGCTC 1 cut(s) 208
EcoO109I RGGNCCY 1 cut(s) 705
EcoT14I CCWWGG 1 cut(s) 676
EcoT22I ATGCAT 1 cut(s) 196
EcoT38I GRGCYC 1 cut(s) 210
ErhI CCWWGG 1 cut(s) 676
FaeI CATG 1 cut(s) 479
FaiI YATR 5 cut(s) 407, 477, 590, 723, 891
FatI CATG 1 cut(s) 475
Fnu4HI GCNGC 2 cut(s) 309, 887
FokI GGATG 5 cut(s) 203, 239, 247, 656, 659
FriOI GRGCYC 1 cut(s) 210
Fsp4HI GCNGC 2 cut(s) 309, 887
FspBI CTAG 1 cut(s) 461
GlaI GCGC 1 cut(s) 790
GluI GCNGC 2 cut(s) 309, 887
GsuI CTGGAG 1 cut(s) 411
HaeIII GGCC 2 cut(s) 147, 706
HapII CCGG 1 cut(s) 443
HhaI GCGC 1 cut(s) 791
Hin1II CATG 1 cut(s) 479
Hin6I GCGC 1 cut(s) 789
HinP1I GCGC 1 cut(s) 789
HincII GTYRAC 1 cut(s) 658
HindII GTYRAC 1 cut(s) 658
HindIII AAGCTT 1 cut(s) 372
HinfI GANTC 8 cut(s) 86, 269, 278, 284, 290, 323, 419, 620
HpaII CCGG 1 cut(s) 443
HphI GGTGA 1 cut(s) 611
Hpy166II GTNNAC 2 cut(s) 221, 658
Hpy188III TCNNGA 5 cut(s) 203, 211, 329, 496, 536
Hpy8I GTNNAC 2 cut(s) 221, 658
HpyAV CCTTC 5 cut(s) 70, 148, 180, 533, 844
HpyCH4III ACNGT 1 cut(s) 684
HpyCH4IV ACGT 1 cut(s) 660
HpyCH4V TGCA 6 cut(s) 11, 194, 311, 743, 800, 889
HpyF10VI GCNNNNNNNGC 3 cut(s) 17, 797, 883
HpyF3I CTNAG 4 cut(s) 151, 317, 827, 903
HpySE526I ACGT 1 cut(s) 660
Hsp92II CATG 1 cut(s) 479
HspAI GCGC 1 cut(s) 789
Kzo9I GATC 2 cut(s) 243, 736
LguI GCTCTTC 1 cut(s) 859
Lsp1109I GCAGC 2 cut(s) 295, 873
LweI GCATC 4 cut(s) 181, 272, 346, 873
MaeI CTAG 1 cut(s) 461
MaeII ACGT 1 cut(s) 660
MaeIII GTNAC 1 cut(s) 561
MalI GATC 2 cut(s) 245, 738
MboI GATC 2 cut(s) 243, 736
MflI RGATCY 1 cut(s) 243
MhlI GDGCHC 1 cut(s) 210
MluCI AATT 2 cut(s) 198, 831
MlyI GAGTC 5 cut(s) 80, 278, 293, 299, 332
MmeI TCCRAC 1 cut(s) 63
Mph1103I ATGCAT 1 cut(s) 196
MseI TTAA 3 cut(s) 197, 609, 860
MspI CCGG 1 cut(s) 443
Mva1269I GAATGC 1 cut(s) 57
MwoI GCNNNNNNNGC 3 cut(s) 17, 797, 883
NdeII GATC 2 cut(s) 243, 736
NlaIII CATG 1 cut(s) 479
NlaIV GGNNCC 1 cut(s) 148
NmuCI GTSAC 1 cut(s) 561
NsiI ATGCAT 1 cut(s) 196
NspV TTCGAA 2 cut(s) 31, 61
PciSI GCTCTTC 1 cut(s) 859
PctI GAATGC 1 cut(s) 57
PfeI GAWTC 3 cut(s) 278, 419, 620
PkrI GCNGC 2 cut(s) 310, 888
PleI GAGTC 5 cut(s) 80, 277, 292, 298, 331
PpsI GAGTC 5 cut(s) 80, 277, 292, 298, 331
PshBI ATTAAT 1 cut(s) 197
PsiI TTATAA 1 cut(s) 590
Psp124BI GAGCTC 1 cut(s) 210
PspN4I GGNNCC 1 cut(s) 148
PspPI GGNCC 2 cut(s) 146, 705
PsuI RGATCY 1 cut(s) 243
RsaI GTAC 1 cut(s) 45
RsaNI GTAC 1 cut(s) 44
SacI GAGCTC 1 cut(s) 210
SapI GCTCTTC 1 cut(s) 859
SaqAI TTAA 3 cut(s) 197, 609, 860
SatI GCNGC 2 cut(s) 309, 887
Sau3AI GATC 2 cut(s) 243, 736
Sau96I GGNCC 2 cut(s) 146, 705
SchI GAGTC 5 cut(s) 80, 278, 293, 299, 332
SduI GDGCHC 1 cut(s) 210
SfaNI GCATC 4 cut(s) 181, 272, 346, 873
SfuI TTCGAA 2 cut(s) 31, 61
SmlI CTYRAG 2 cut(s) 209, 494
SmoI CTYRAG 2 cut(s) 209, 494
Sse9I AATT 2 cut(s) 198, 831
SsiI CCGC 1 cut(s) 515
SspMI CTAG 1 cut(s) 461
SstI GAGCTC 1 cut(s) 210
StyI CCWWGG 1 cut(s) 676
TaaI ACNGT 1 cut(s) 684
TaiI ACGT 1 cut(s) 663
TaqI TCGA 2 cut(s) 31, 61
TasI AATT 2 cut(s) 198, 831
TfiI GAWTC 3 cut(s) 278, 419, 620
Tru1I TTAA 3 cut(s) 197, 609, 860
Tru9I TTAA 3 cut(s) 197, 609, 860
TseFI GTSAC 1 cut(s) 561
TseI GCWGC 2 cut(s) 308, 886
Tsp45I GTSAC 1 cut(s) 561
TspDTI ATGAA 4 cut(s) 30, 447, 660, 828
TspGWI ACGGA 1 cut(s) 198
VspI ATTAAT 1 cut(s) 197
XspI CTAG 1 cut(s) 461
Zsp2I ATGCAT 1 cut(s) 196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.