Prupe.3G121800_v2.0.a1

Wall-associated receptor kinase C-terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0012438
Physical Location & Seq
Forward (+)
10841085 .. 10842698
1614 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G121800.1

Sequence Viewer

Length: 921 bp
ATGAAGCTTCCCCACCATCCTTCAACAACAATTTTCTCCTTCATCTTCATCCTCCTCTTAGCCTCCTCAATATCATCCCAAACCTGCCAAAGATCCTGTGGCAAACTCCCCCTCAAATTCCCATTTGGCAGTGGCCTTGGTTGCGGTGACCCTCGCTTCCACCAGTACGTGTCATGCAGCCAAGACAACCTCATGTTCACAATGCACACAGGCTCCTACCCTGTCACCAACATAGACTACACCAACAAAGTCATGTACATCTCAGACCCCTCCATGTCAACATGTTCCTGCACCCAACCAAGCAAAGGCTTTGGCCTGGATTGGGACGCGCCCTTCTCTTTCCAAGATGACAACATCTTCGCCTTACTTGACTGCACAACTTCTTCCTCCCCAATATTCCAATCAAACACCTTATACACTGATAAAAACAACAACTCCAAAGTGTCCCTATGTGACAATGAAGGCACCTCAATTTGCAGCTTCTTATATTCTTGCAGGGCCATAAGCACAATCAACCTCCCAATCTCCACATGTTGCGTTTACACGCCAGTTGATCTCGGGCCGGCTTTTGACATGGACTTGCAGAAACTGCAATGCAGTTCTTATTCTGGGTTTTACAGCTTCAACGAGCGCCAGTCTGACCCTAACAGTTGGAAGTATGGGATTGCGCTCAAATATAAATTCAGTGTGAATAATGAGTATCCGAATTCATGTGCTAATTGTGAAAGGAGCACTGGGATTTGTGGCTACTATTCTGGTGGGGCTTACAGTTCTTTTTTATGTAATTGTCCAAATGGGATAAACACCACCAATGATTGTTACTTTGGAGCCAATTATAATTATGGTTCGAGGCTCTCATCCTGGCAGATTGGTACTTGGCTATTCTATTGCTTGGCTTGCCTATTGATTTCAGTCTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GUB_WAK_bind WAK_assoc

Protein Analysis

307

Amino Acids

33.94

Weight (kDa)

5.74

Isoelectric Point (pI)

47.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012438)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10380 AT1G10380
fragaria_vesca FvH4_4g35530
malus_domestica MD13G1082400.v1.1 MD16G1081500.v1.1
prunus_persica Prupe.3G121800_v2.0.a1 Prupe.3G121800_v2.0.a1
pyrus_communis pycom13g07100 pycom16g07030
rosa_chinensis RchiOBHm_Chr4g0445181
rosa_laevigata RLG00000005760
rosa_multiflora Rmu_sc0000050.1_g000037
rosa_roxburghii Rroxscaffold_5G00385690
rosa_rugosa Rorug04G0359700
rosa_samantha Rh4AG420500 Rh4BG432400 Rh4CG447000 Rh4DG428500
rosa_wichuraiana Rw4G036060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 837
Acc36I ACCTGC 1 cut(s) 92
AccB1I GGYRCC 1 cut(s) 464
AccII CGCG 1 cut(s) 329
AciI CCGC 1 cut(s) 144
AclWI GGATC 1 cut(s) 87
AcsI RAATTY 3 cut(s) 116, 680, 706
AfaI GTAC 3 cut(s) 167, 257, 874
AfiI CCNNNNNNNGG 2 cut(s) 305, 322
AflIII ACRYGT 3 cut(s) 168, 281, 530
AgsI TTSAA 2 cut(s) 24, 625
AjnI CCWGG 2 cut(s) 315, 860
AluBI AGCT 3 cut(s) 7, 480, 621
AluI AGCT 3 cut(s) 7, 480, 621
Alw21I GWGCWC 1 cut(s) 734
AlwI GGATC 1 cut(s) 87
AlwNI CAGNNNCTG 1 cut(s) 589
Ama87I CYCGRG 1 cut(s) 557
AoxI GGCC 4 cut(s) 133, 313, 498, 560
ApeKI GCWGC 2 cut(s) 177, 477
ApoI RAATTY 3 cut(s) 116, 680, 706
ArsI GACNNNNNNTTYG 2 cut(s) 341, 373
AspLEI GCGC 3 cut(s) 331, 633, 670
AspS9I GGNCC 2 cut(s) 498, 560
AsuHPI GGTGA 2 cut(s) 158, 217
AvaI CYCGRG 1 cut(s) 557
BanI GGYRCC 1 cut(s) 464
Bbv12I GWGCWC 1 cut(s) 734
BbvI GCAGC 2 cut(s) 189, 489
BccI CCATC 1 cut(s) 24
BciT130I CCWGG 2 cut(s) 317, 862
BciVI GTATCC 1 cut(s) 711
BfoI RGCGCY 1 cut(s) 634
BfuAI ACCTGC 1 cut(s) 92
BfuI GTATCC 1 cut(s) 711
BisI GCNGC 2 cut(s) 178, 478
BlsI GCNGC 2 cut(s) 179, 479
Bme1390I CCNGG 2 cut(s) 317, 862
BmeT110I CYCGRG 1 cut(s) 557
BmgT120I GGNCC 2 cut(s) 498, 560
BmiI GGNNCC 3 cut(s) 214, 466, 829
BmrFI CCNGG 2 cut(s) 317, 862
BmrI ACTGGG 1 cut(s) 744
BmuI ACTGGG 1 cut(s) 744
BsaAI YACGTR 1 cut(s) 169
BsaJI CCNNGG 1 cut(s) 136
BsaXI ACNNNNNCTCC 4 cut(s) 197, 227, 419, 449
Bsc4I CCNNNNNNNGG 2 cut(s) 305, 322
Bse118I RCCGGY 1 cut(s) 562
Bse1I ACTGG 4 cut(s) 163, 548, 634, 739
Bse3DI GCAATG 1 cut(s) 599
BseBI CCWGG 2 cut(s) 317, 862
BseDI CCNNGG 1 cut(s) 136
BseGI GGATG 4 cut(s) 16, 48, 74, 857
BseLI CCNNNNNNNGG 2 cut(s) 305, 322
BseMI GCAATG 1 cut(s) 599
BseMII CTCAG 1 cut(s) 276
BseNI ACTGG 4 cut(s) 163, 548, 634, 739
BseRI GAGGAG 2 cut(s) 44, 55
BseXI GCAGC 2 cut(s) 189, 489
BsgI GTGCAG 2 cut(s) 274, 358
Bsh1236I CGCG 1 cut(s) 329
BshFI GGCC 4 cut(s) 135, 315, 500, 562
BshNI GGYRCC 1 cut(s) 464
BsiHKAI GWGCWC 1 cut(s) 734
BsiHKCI CYCGRG 1 cut(s) 557
BsiSI CCGG 1 cut(s) 563
BslFI GGGAC 2 cut(s) 338, 430
BslI CCNNNNNNNGG 2 cut(s) 305, 322
BsmFI GGGAC 2 cut(s) 338, 430
BsnI GGCC 4 cut(s) 135, 315, 500, 562
BsoBI CYCGRG 1 cut(s) 557
Bsp1286I GDGCHC 1 cut(s) 734
Bsp1407I TGTACA 1 cut(s) 255
Bsp143I GATC 2 cut(s) 92, 553
BspACI CCGC 1 cut(s) 144
BspANI GGCC 4 cut(s) 135, 315, 500, 562
BspCNI CTCAG 1 cut(s) 275
BspFNI CGCG 1 cut(s) 329
BspLI GGNNCC 3 cut(s) 214, 466, 829
BspMI ACCTGC 1 cut(s) 92
BspPI GGATC 1 cut(s) 87
BspT107I GGYRCC 1 cut(s) 464
BsrDI GCAATG 1 cut(s) 599
BsrFI RCCGGY 1 cut(s) 562
BsrGI TGTACA 1 cut(s) 255
BsrI ACTGG 4 cut(s) 163, 548, 634, 739
BssAI RCCGGY 1 cut(s) 562
BssECI CCNNGG 1 cut(s) 136
BssMI GATC 2 cut(s) 92, 553
BssT1I CCWWGG 1 cut(s) 136
Bst2UI CCWGG 2 cut(s) 317, 862
Bst4CI ACNGT 2 cut(s) 650, 770
BstAPI GCANNNNNTGC 1 cut(s) 589
BstAUI TGTACA 1 cut(s) 255
BstBAI YACGTR 1 cut(s) 169
BstC8I GCNNGC 2 cut(s) 564, 898
BstDEI CTNAG 2 cut(s) 58, 262
BstEII GGTNACC 1 cut(s) 146
BstF5I GGATG 4 cut(s) 16, 48, 74, 857
BstFNI CGCG 1 cut(s) 329
BstH2I RGCGCY 1 cut(s) 634
BstHHI GCGC 3 cut(s) 331, 633, 670
BstKTI GATC 2 cut(s) 95, 556
BstMBI GATC 2 cut(s) 92, 553
BstMWI GCNNNNNNNGC 3 cut(s) 141, 589, 897
BstNI CCWGG 2 cut(s) 317, 862
BstNSI RCATGY 2 cut(s) 285, 534
BstPI GGTNACC 1 cut(s) 146
BstSCI CCNGG 2 cut(s) 315, 860
BstUI CGCG 1 cut(s) 329
BstV1I GCAGC 2 cut(s) 189, 489
BstX2I RGATCY 1 cut(s) 92
BstYI RGATCY 1 cut(s) 92
BsuI GTATCC 1 cut(s) 711
BsuRI GGCC 4 cut(s) 135, 315, 500, 562
BtsCI GGATG 4 cut(s) 16, 48, 74, 857
BtsI GCAGTG 1 cut(s) 136
BtsIMutI CAGTG 4 cut(s) 136, 417, 691, 732
BveI ACCTGC 1 cut(s) 92
Cac8I GCNNGC 2 cut(s) 564, 898
CaiI CAGNNNCTG 1 cut(s) 589
CfoI GCGC 3 cut(s) 331, 633, 670
Cfr10I RCCGGY 1 cut(s) 562
Cfr13I GGNCC 2 cut(s) 498, 560
CseI GACGC 1 cut(s) 335
Csp6I GTAC 3 cut(s) 166, 256, 873
CviAII CATG 8 cut(s) 174, 193, 253, 274, 282, 531, 574, 711
CviQI GTAC 3 cut(s) 166, 256, 873
DdeI CTNAG 2 cut(s) 58, 262
DpnI GATC 2 cut(s) 94, 555
DpnII GATC 2 cut(s) 92, 553
Eco130I CCWWGG 1 cut(s) 136
Eco88I CYCGRG 1 cut(s) 557
Eco91I GGTNACC 1 cut(s) 146
EcoO65I GGTNACC 1 cut(s) 146
EcoRI GAATTC 1 cut(s) 706
EcoRII CCWGG 2 cut(s) 315, 860
EcoT14I CCWWGG 1 cut(s) 136
ErhI CCWWGG 1 cut(s) 136
FaeI CATG 8 cut(s) 177, 196, 256, 277, 285, 534, 577, 714
FaqI GGGAC 2 cut(s) 338, 430
FatI CATG 8 cut(s) 173, 192, 252, 273, 281, 530, 573, 710
Fnu4HI GCNGC 2 cut(s) 178, 478
FokI GGATG 4 cut(s) 3, 35, 61, 844
Fsp4HI GCNGC 2 cut(s) 178, 478
GlaI GCGC 3 cut(s) 330, 632, 669
GluI GCNGC 2 cut(s) 178, 478
HaeII RGCGCY 1 cut(s) 634
HaeIII GGCC 4 cut(s) 135, 315, 500, 562
HapII CCGG 1 cut(s) 563
HgaI GACGC 1 cut(s) 335
HhaI GCGC 3 cut(s) 331, 633, 670
Hin1II CATG 8 cut(s) 177, 196, 256, 277, 285, 534, 577, 714
Hin6I GCGC 3 cut(s) 329, 631, 668
HinP1I GCGC 3 cut(s) 329, 631, 668
HincII GTYRAC 1 cut(s) 279
HindII GTYRAC 1 cut(s) 279
HindIII AAGCTT 1 cut(s) 5
HpaII CCGG 1 cut(s) 563
HphI GGTGA 2 cut(s) 158, 217
Hpy166II GTNNAC 3 cut(s) 198, 279, 541
Hpy188I TCNGA 3 cut(s) 265, 640, 705
Hpy8I GTNNAC 3 cut(s) 198, 279, 541
HpyAV CCTTC 4 cut(s) 30, 49, 343, 455
HpyCH4III ACNGT 2 cut(s) 650, 770
HpyCH4IV ACGT 1 cut(s) 168
HpyCH4V TGCA 9 cut(s) 177, 205, 291, 375, 477, 495, 583, 592, 597
HpyF10VI GCNNNNNNNGC 3 cut(s) 141, 589, 897
HpyF3I CTNAG 2 cut(s) 58, 262
HpySE526I ACGT 1 cut(s) 168
Hsp92II CATG 8 cut(s) 177, 196, 256, 277, 285, 534, 577, 714
HspAI GCGC 3 cut(s) 329, 631, 668
KroI GCCGGC 1 cut(s) 562
KroNI GCCGGC 1 cut(s) 564
Kzo9I GATC 2 cut(s) 92, 553
LmnI GCTCC 3 cut(s) 218, 729, 827
Lsp1109I GCAGC 2 cut(s) 189, 489
MaeII ACGT 1 cut(s) 168
MaeIII GTNAC 4 cut(s) 146, 223, 452, 818
MalI GATC 2 cut(s) 94, 555
MboI GATC 2 cut(s) 92, 553
MboII GAAGA 3 cut(s) 37, 349, 375
MflI RGATCY 1 cut(s) 92
MhlI GDGCHC 1 cut(s) 734
MluCI AATT 9 cut(s) 30, 116, 471, 680, 706, 718, 784, 832, 838
MmeI TCCRAC 1 cut(s) 632
MroNI GCCGGC 1 cut(s) 562
MspI CCGG 1 cut(s) 563
MspR9I CCNGG 2 cut(s) 317, 862
MvaI CCWGG 2 cut(s) 317, 862
MvnI CGCG 1 cut(s) 329
MwoI GCNNNNNNNGC 3 cut(s) 141, 589, 897
NaeI GCCGGC 1 cut(s) 564
NdeII GATC 2 cut(s) 92, 553
NgoMIV GCCGGC 1 cut(s) 562
NlaIII CATG 8 cut(s) 177, 196, 256, 277, 285, 534, 577, 714
NlaIV GGNNCC 3 cut(s) 214, 466, 829
NmuCI GTSAC 3 cut(s) 146, 223, 452
NspI RCATGY 2 cut(s) 285, 534
PciI ACATGT 2 cut(s) 281, 530
PdiI GCCGGC 1 cut(s) 564
PkrI GCNGC 2 cut(s) 179, 479
Ppu21I YACGTR 1 cut(s) 169
PscI ACATGT 2 cut(s) 281, 530
PsiI TTATAA 1 cut(s) 837
Psp6I CCWGG 2 cut(s) 315, 860
PspEI GGTNACC 1 cut(s) 146
PspGI CCWGG 2 cut(s) 315, 860
PspN4I GGNNCC 3 cut(s) 214, 466, 829
PspPI GGNCC 2 cut(s) 498, 560
PstNI CAGNNNCTG 1 cut(s) 589
PsuI RGATCY 1 cut(s) 92
RsaI GTAC 3 cut(s) 167, 257, 874
RsaNI GTAC 3 cut(s) 166, 256, 873
SatI GCNGC 2 cut(s) 178, 478
Sau3AI GATC 2 cut(s) 92, 553
Sau96I GGNCC 2 cut(s) 498, 560
ScrFI CCNGG 2 cut(s) 317, 862
SduI GDGCHC 1 cut(s) 734
SetI ASST 9 cut(s) 9, 86, 171, 192, 413, 470, 482, 519, 623
Sse9I AATT 9 cut(s) 30, 116, 471, 680, 706, 718, 784, 832, 838
SsiI CCGC 1 cut(s) 144
SspI AATATT 1 cut(s) 396
StyD4I CCNGG 2 cut(s) 315, 860
StyI CCWWGG 1 cut(s) 136
TaaI ACNGT 2 cut(s) 650, 770
TaiI ACGT 1 cut(s) 171
TaqI TCGA 1 cut(s) 848
TasI AATT 9 cut(s) 30, 116, 471, 680, 706, 718, 784, 832, 838
TatI WGTACW 1 cut(s) 255
TscAI CASTG 4 cut(s) 136, 424, 691, 739
TseFI GTSAC 3 cut(s) 146, 223, 452
TseI GCWGC 2 cut(s) 177, 477
Tsp45I GTSAC 3 cut(s) 146, 223, 452
TspDTI ATGAA 5 cut(s) 17, 31, 37, 474, 699
TspRI CASTG 4 cut(s) 136, 424, 691, 739
XapI RAATTY 3 cut(s) 116, 680, 706
XceI RCATGY 2 cut(s) 285, 534
XcmI CCANNNNNNNNNTGG 1 cut(s) 95
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.