AT1G10460

germin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0016191
Physical Location & Seq
Reverse (-)
3439030 .. 3440359
1330 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G10460.1

Sequence Viewer

Length: 654 bp
ATGATTCTAAACATACTACTAACGCTCACACTTCTTATGGGTCGGGTTAAATCCGACCCGGACCCGCTCCAAGACTACTGCGTTTCTCCTCCTCCTTCATCTCACCAACAAATCTTCCTCAACGGCAAACTTTGCAAAGATCCGACACAAGCCAGCGTCTCTGACTTTTCAACATCCGCATTATCCAGACCCGGAAACACTAAGACCAAACCGTTTATGATCAACGTCACTGTGACCACAACCGCCAACCTCCCAGGTCTAAACACAGTGGGCCTTACAATGGCCAGGCTAGACTTCGGAGGCTCTGGTGTTGTCCCACCGCACGTGCACCCACGCGCCTCCGAAGTGACAGTCTGCCTCGACGGTGTCCTTCTCGTCGGGTTCGTGGATACGTCGGGTCGGGTCTTTACGCAGGAGCTTCATCCGGGTGAGACATTCGTGTTTCCCAAAGGTTTGATCCATTTTCTATATAACATTGATACGGTGAGCTCAGCTTTGGCAGTCTCTGGGCTGAGTAGTCAGAATCCTGGGACTCAGATTGTATCTTTGTCGTCTTTCATTTCAAAGCCTCCGTTTCTGGTAGAGGTTTTGAAGAGTGCTTATGATATCAACGGCCAGGATGTTGCTAGGATCCGCAAAAGTCTTGAAGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

217

Amino Acids

23.19

Weight (kDa)

6.95

Isoelectric Point (pI)

29.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 61 - 208 5.6e-40 Cupin
Cupin_2 PF07883 102 - 161 6e-08 Cupin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016191)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10460
fragaria_vesca FvH4_4g35250
malus_domestica MD16G1084100.v1.1
prunus_persica Prupe.1G261900_v2.0.a1
pyrus_communis pycom16g07310
rosa_chinensis RchiOBHm_Chr4g0444861
rosa_laevigata RLG00000005794
rosa_multiflora Rmu_sc0006845.1_g000007
rosa_roxburghii Rroxscaffold_5G00385350
rosa_rugosa Rorug04G0355700
rosa_samantha Rh4AG417200 Rh4BG429000 Rh4CG443700 Rh4DG424900
rosa_wichuraiana Rw4G035760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 67
AccII CGCG 1 cut(s) 336
AciI CCGC 5 cut(s) 65, 177, 243, 320, 634
AclWI GGATC 4 cut(s) 134, 451, 625, 638
AcoI YGGCCR 2 cut(s) 282, 613
AcvI CACGTG 1 cut(s) 325
AfiI CCNNNNNNNGG 1 cut(s) 280
AgsI TTSAA 4 cut(s) 171, 564, 592, 647
AjnI CCWGG 4 cut(s) 253, 284, 526, 615
AluBI AGCT 3 cut(s) 418, 489, 494
AluI AGCT 3 cut(s) 418, 489, 494
Alw21I GWGCWC 2 cut(s) 330, 491
Alw26I GTCTC 3 cut(s) 163, 425, 508
Alw44I GTGCAC 1 cut(s) 326
AlwI GGATC 4 cut(s) 134, 451, 625, 638
AlwNI CAGNNNCTG 1 cut(s) 506
AoxI GGCC 3 cut(s) 271, 282, 613
ApaLI GTGCAC 1 cut(s) 326
ArsI GACNNNNNNTTYG 2 cut(s) 336, 368
AspLEI GCGC 1 cut(s) 338
AspS9I GGNCC 2 cut(s) 61, 271
AsuC2I CCSGG 3 cut(s) 59, 192, 426
AsuHPI GGTGA 3 cut(s) 95, 440, 496
AvaII GGWCC 1 cut(s) 61
BaeGI GKGCMC 1 cut(s) 330
BalI TGGCCA 1 cut(s) 284
BamHI GGATCC 1 cut(s) 630
BanII GRGCYC 1 cut(s) 491
BbrPI CACGTG 1 cut(s) 325
Bbv12I GWGCWC 2 cut(s) 330, 491
BceAI ACGGC 2 cut(s) 139, 628
BciT130I CCWGG 4 cut(s) 255, 286, 528, 617
BciVI GTATCC 1 cut(s) 382
BclI TGATCA 1 cut(s) 219
BcnI CCSGG 3 cut(s) 59, 192, 426
BcoDI GTCTC 3 cut(s) 163, 425, 508
BfaI CTAG 2 cut(s) 290, 627
BfuI GTATCC 1 cut(s) 382
BlpI GCTNAGC 1 cut(s) 490
Bme1390I CCNGG 7 cut(s) 59, 192, 255, 286, 426, 528, 617
Bme18I GGWCC 1 cut(s) 61
BmgT120I GGNCC 2 cut(s) 61, 271
BmiI GGNNCC 2 cut(s) 63, 632
BmrFI CCNGG 7 cut(s) 59, 192, 255, 286, 426, 528, 617
Bpu1102I GCTNAGC 1 cut(s) 490
BpuMI CCSGG 3 cut(s) 59, 192, 426
BsaAI YACGTR 1 cut(s) 325
BsaJI CCNNGG 2 cut(s) 253, 527
Bsc4I CCNNNNNNNGG 1 cut(s) 280
BseBI CCWGG 4 cut(s) 255, 286, 528, 617
BseDI CCNNGG 2 cut(s) 253, 527
BseGI GGATG 3 cut(s) 173, 421, 625
BseLI CCNNNNNNNGG 1 cut(s) 280
BseMII CTCAG 3 cut(s) 503, 504, 548
BseRI GAGGAG 2 cut(s) 78, 81
BseSI GKGCMC 1 cut(s) 330
Bsh1236I CGCG 1 cut(s) 336
BshFI GGCC 3 cut(s) 273, 284, 615
BsiHKAI GWGCWC 2 cut(s) 330, 491
BsiSI CCGG 3 cut(s) 59, 192, 425
BslFI GGGAC 2 cut(s) 299, 544
BslI CCNNNNNNNGG 1 cut(s) 280
BsmAI GTCTC 3 cut(s) 163, 425, 508
BsmBI CGTCTC 1 cut(s) 163
BsmFI GGGAC 2 cut(s) 299, 544
BsnI GGCC 3 cut(s) 273, 284, 615
Bsp1286I GDGCHC 2 cut(s) 330, 491
Bsp143I GATC 4 cut(s) 139, 219, 456, 630
Bsp1720I GCTNAGC 1 cut(s) 490
BspACI CCGC 5 cut(s) 65, 177, 243, 320, 634
BspANI GGCC 3 cut(s) 273, 284, 615
BspCNI CTCAG 3 cut(s) 503, 504, 547
BspFNI CGCG 1 cut(s) 336
BspLI GGNNCC 2 cut(s) 63, 632
BspPI GGATC 4 cut(s) 134, 451, 625, 638
BsrBI CCGCTC 1 cut(s) 67
BssECI CCNNGG 2 cut(s) 253, 527
BssMI GATC 4 cut(s) 139, 219, 456, 630
Bst2UI CCWGG 4 cut(s) 255, 286, 528, 617
Bst4CI ACNGT 6 cut(s) 213, 232, 268, 352, 365, 484
Bst6I CTCTTC 1 cut(s) 587
BstAPI GCANNNNNTGC 1 cut(s) 132
BstBAI YACGTR 1 cut(s) 325
BstC8I GCNNGC 1 cut(s) 154
BstDEI CTNAG 4 cut(s) 201, 490, 512, 534
BstF5I GGATG 3 cut(s) 173, 421, 625
BstFNI CGCG 1 cut(s) 336
BstHHI GCGC 1 cut(s) 338
BstKTI GATC 4 cut(s) 142, 222, 459, 633
BstMAI GTCTC 3 cut(s) 163, 425, 508
BstMBI GATC 4 cut(s) 139, 219, 456, 630
BstMWI GCNNNNNNNGC 1 cut(s) 132
BstNI CCWGG 4 cut(s) 255, 286, 528, 617
BstSCI CCNGG 7 cut(s) 57, 190, 253, 284, 424, 526, 615
BstSLI GKGCMC 1 cut(s) 330
BstUI CGCG 1 cut(s) 336
BstX2I RGATCY 2 cut(s) 139, 630
BstYI RGATCY 2 cut(s) 139, 630
BsuI GTATCC 1 cut(s) 382
BsuRI GGCC 3 cut(s) 273, 284, 615
BtsCI GGATG 3 cut(s) 173, 421, 625
BtsIMutI CAGTG 2 cut(s) 228, 273
Cac8I GCNNGC 1 cut(s) 154
CaiI CAGNNNCTG 1 cut(s) 506
CfoI GCGC 1 cut(s) 338
Cfr13I GGNCC 2 cut(s) 61, 271
CseI GACGC 1 cut(s) 145
DdeI CTNAG 4 cut(s) 201, 490, 512, 534
DpnI GATC 4 cut(s) 141, 221, 458, 632
DpnII GATC 4 cut(s) 139, 219, 456, 630
EaeI YGGCCR 2 cut(s) 282, 613
Eam1104I CTCTTC 1 cut(s) 587
EarI CTCTTC 1 cut(s) 587
Ecl136II GAGCTC 1 cut(s) 489
Eco24I GRGCYC 1 cut(s) 491
Eco32I GATATC 1 cut(s) 607
Eco47I GGWCC 1 cut(s) 61
Eco53kI GAGCTC 1 cut(s) 489
Eco72I CACGTG 1 cut(s) 325
EcoICRI GAGCTC 1 cut(s) 489
EcoRII CCWGG 4 cut(s) 253, 284, 526, 615
EcoRV GATATC 1 cut(s) 607
EcoT38I GRGCYC 1 cut(s) 491
Esp3I CGTCTC 1 cut(s) 163
FaiI YATR 6 cut(s) 14, 38, 218, 469, 471, 603
FaqI GGGAC 2 cut(s) 299, 544
FauI CCCGC 1 cut(s) 72
FbaI TGATCA 1 cut(s) 219
FokI GGATG 3 cut(s) 160, 408, 632
FriOI GRGCYC 1 cut(s) 491
FspBI CTAG 2 cut(s) 290, 627
GlaI GCGC 1 cut(s) 337
HaeIII GGCC 3 cut(s) 273, 284, 615
HapII CCGG 3 cut(s) 59, 192, 425
HgaI GACGC 1 cut(s) 145
HhaI GCGC 1 cut(s) 338
Hin6I GCGC 1 cut(s) 336
HinP1I GCGC 1 cut(s) 336
HinfI GANTC 3 cut(s) 4, 523, 532
HpaII CCGG 3 cut(s) 59, 192, 425
HphI GGTGA 3 cut(s) 95, 440, 496
Hpy166II GTNNAC 1 cut(s) 328
Hpy188I TCNGA 7 cut(s) 55, 144, 163, 299, 343, 522, 537
Hpy188III TCNNGA 2 cut(s) 186, 644
Hpy8I GTNNAC 1 cut(s) 328
Hpy99I CGWCG 3 cut(s) 365, 380, 397
HpyAV CCTTC 3 cut(s) 105, 380, 641
HpyCH4III ACNGT 6 cut(s) 213, 232, 268, 352, 365, 484
HpyCH4IV ACGT 3 cut(s) 225, 324, 392
HpyCH4V TGCA 2 cut(s) 135, 328
HpyF10VI GCNNNNNNNGC 1 cut(s) 132
HpyF3I CTNAG 4 cut(s) 201, 490, 512, 534
HpySE526I ACGT 3 cut(s) 225, 324, 392
HspAI GCGC 1 cut(s) 336
Ksp22I TGATCA 1 cut(s) 219
Kzo9I GATC 4 cut(s) 139, 219, 456, 630
LmnI GCTCC 2 cut(s) 72, 415
MaeI CTAG 2 cut(s) 290, 627
MaeII ACGT 3 cut(s) 225, 324, 392
MaeIII GTNAC 3 cut(s) 226, 232, 346
MalI GATC 4 cut(s) 141, 221, 458, 632
MbiI CCGCTC 1 cut(s) 67
MboI GATC 4 cut(s) 139, 219, 456, 630
MboII GAAGA 2 cut(s) 106, 604
MflI RGATCY 2 cut(s) 139, 630
MhlI GDGCHC 2 cut(s) 330, 491
MlsI TGGCCA 1 cut(s) 284
MluNI TGGCCA 1 cut(s) 284
MlyI GAGTC 1 cut(s) 526
MmeI TCCRAC 2 cut(s) 78, 167
MnlI CCTC 9 cut(s) 99, 102, 128, 260, 293, 349, 368, 577, 579
Mox20I TGGCCA 1 cut(s) 284
MscI TGGCCA 1 cut(s) 284
MseI TTAA 1 cut(s) 48
MslI CAYNNNNRTG 1 cut(s) 426
Msp20I TGGCCA 1 cut(s) 284
MspI CCGG 3 cut(s) 59, 192, 425
MspR9I CCNGG 7 cut(s) 59, 192, 255, 286, 426, 528, 617
MvaI CCWGG 4 cut(s) 255, 286, 528, 617
MvnI CGCG 1 cut(s) 336
MwoI GCNNNNNNNGC 1 cut(s) 132
NciI CCSGG 3 cut(s) 59, 192, 426
NdeII GATC 4 cut(s) 139, 219, 456, 630
NlaIV GGNNCC 2 cut(s) 63, 632
NmuCI GTSAC 3 cut(s) 226, 232, 346
PcsI WCGNNNNNNNCGW 1 cut(s) 381
PfeI GAWTC 2 cut(s) 4, 523
PflFI GACNNNGTC 1 cut(s) 365
PleI GAGTC 1 cut(s) 526
PmaCI CACGTG 1 cut(s) 325
PmlI CACGTG 1 cut(s) 325
PpsI GAGTC 1 cut(s) 526
Ppu21I YACGTR 1 cut(s) 325
Psp124BI GAGCTC 1 cut(s) 491
Psp6I CCWGG 4 cut(s) 253, 284, 526, 615
PspCI CACGTG 1 cut(s) 325
PspGI CCWGG 4 cut(s) 253, 284, 526, 615
PspN4I GGNNCC 2 cut(s) 63, 632
PspPI GGNCC 2 cut(s) 61, 271
PstNI CAGNNNCTG 1 cut(s) 506
PsuI RGATCY 2 cut(s) 139, 630
PsyI GACNNNGTC 1 cut(s) 365
RseI CAYNNNNRTG 1 cut(s) 426
SacI GAGCTC 1 cut(s) 491
SaqAI TTAA 1 cut(s) 48
Sau3AI GATC 4 cut(s) 139, 219, 456, 630
Sau96I GGNCC 2 cut(s) 61, 271
SchI GAGTC 1 cut(s) 526
ScrFI CCNGG 7 cut(s) 59, 192, 255, 286, 426, 528, 617
SduI GDGCHC 2 cut(s) 330, 491
SinI GGWCC 1 cut(s) 61
SmiMI CAYNNNNRTG 1 cut(s) 426
SsiI CCGC 5 cut(s) 65, 177, 243, 320, 634
SspMI CTAG 2 cut(s) 290, 627
SstI GAGCTC 1 cut(s) 491
StyD4I CCNGG 7 cut(s) 57, 190, 253, 284, 424, 526, 615
TaaI ACNGT 6 cut(s) 213, 232, 268, 352, 365, 484
TaiI ACGT 3 cut(s) 228, 327, 395
TaqI TCGA 1 cut(s) 360
TfiI GAWTC 2 cut(s) 4, 523
Tru1I TTAA 1 cut(s) 48
Tru9I TTAA 1 cut(s) 48
TscAI CASTG 2 cut(s) 235, 273
TseFI GTSAC 3 cut(s) 226, 232, 346
Tsp45I GTSAC 3 cut(s) 226, 232, 346
TspDTI ATGAA 3 cut(s) 87, 410, 547
TspGWI ACGGA 1 cut(s) 561
TspRI CASTG 2 cut(s) 235, 273
Tth111I GACNNNGTC 1 cut(s) 365
VneI GTGCAC 1 cut(s) 326
VpaK11BI GGWCC 1 cut(s) 61
XspI CTAG 2 cut(s) 290, 627
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.