Rroxscaffold_5G00385350

Germin-like protein subfamily 1 member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0016191
Physical Location & Seq
Forward (+)
64433669 .. 64434331
663 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00385350.1

Sequence Viewer

Length: 663 bp
ATGAGAAAGAACTCTTCCTTTCTCCATTTATTCCTCAGCTTTGCTCTTCTACTGGGCCAAGCCAAACCCGACCCAGATCCACTTCAAGACTACTGCATAGCAGATACTAAAACCCCTCAGTATGTTTACTTCAACGGTGCACCCTGCATTAATCCAAATCTAGCACTCTCCTCCCATTTCACTACATCAGTCCTATCCAAACCCGGAAACACTAAAGCCAACCCTTTCGGCTTCAATGTAACTCTAACCAACGCGGTCAATTTACCGGGCATGAACACCTTGGGCTTGAGCATGGCTCGAGTTGACATAGATGCTAATGGGATTGTCCCTCTGCACACACACCCACGGGCCTCAGAGGTAACCACCTGCCTCAAGGGCCGGCTTCTTGTGGGCTTTGTGGACACATCTAACCGTATTTTCACCCAACAATTAAACCCTGGCGAGTCATTTGTTTTTCCAAAGGGTCTCATTCATTTTCTGTACAACTATGATTCAAAGGCCCCGGCAGTGGCATTGTCCGGCTTGAGTAGCCAAAACCCTGGTGCACAGATTGTGTCTCTAGCCTCATTCACTGCAAAGCCTCCAATTGAGATTCAGATATTGAAAAGTTTTCAAATTACCGATCAAGACGTTGCCAGGATCCGAAAGAACCTCGGAGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

220

Amino Acids

23.82

Weight (kDa)

9.2

Isoelectric Point (pI)

18.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 65 - 209 1.8e-40 Cupin
Cupin_2 PF07883 100 - 172 2.5e-09 Cupin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016191)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10460
fragaria_vesca FvH4_4g35250
malus_domestica MD16G1084100.v1.1
prunus_persica Prupe.1G261900_v2.0.a1
pyrus_communis pycom16g07310
rosa_chinensis RchiOBHm_Chr4g0444861
rosa_laevigata RLG00000005794
rosa_multiflora Rmu_sc0006845.1_g000007
rosa_roxburghii Rroxscaffold_5G00385350
rosa_rugosa Rorug04G0355700
rosa_samantha Rh4AG417200 Rh4BG429000 Rh4CG443700 Rh4DG424900
rosa_wichuraiana Rw4G035760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 374
Acc36I ACCTGC 1 cut(s) 374
AccII CGCG 1 cut(s) 254
AciI CCGC 1 cut(s) 254
AclWI GGATC 3 cut(s) 71, 634, 647
AfaI GTAC 1 cut(s) 482
AfiI CCNNNNNNNGG 1 cut(s) 508
AgsI TTSAA 6 cut(s) 86, 133, 235, 495, 604, 614
AjnI CCWGG 3 cut(s) 436, 538, 635
AluBI AGCT 1 cut(s) 39
AluI AGCT 1 cut(s) 39
Alw21I GWGCWC 2 cut(s) 142, 547
Alw26I GTCTC 2 cut(s) 470, 561
Alw44I GTGCAC 2 cut(s) 138, 543
AlwI GGATC 3 cut(s) 71, 634, 647
Ama87I CYCGRG 1 cut(s) 297
AoxI GGCC 4 cut(s) 55, 348, 376, 498
ApaLI GTGCAC 2 cut(s) 138, 543
AseI ATTAAT 1 cut(s) 150
AspS9I GGNCC 4 cut(s) 55, 348, 376, 499
AsuC2I CCSGG 3 cut(s) 204, 267, 503
AsuHPI GGTGA 1 cut(s) 412
AvaI CYCGRG 1 cut(s) 297
BaeGI GKGCMC 2 cut(s) 142, 547
BamHI GGATCC 1 cut(s) 639
BarI GAAGNNNNNNTAC 2 cut(s) 113, 145
Bbv12I GWGCWC 2 cut(s) 142, 547
BbvCI CCTCAGC 1 cut(s) 35
BciT130I CCWGG 3 cut(s) 438, 540, 637
BcnI CCSGG 3 cut(s) 204, 267, 503
BcoDI GTCTC 2 cut(s) 470, 561
BfaI CTAG 2 cut(s) 161, 560
BfuAI ACCTGC 1 cut(s) 374
BglI GCCNNNNNGGC 1 cut(s) 375
Bme1390I CCNGG 6 cut(s) 204, 267, 438, 503, 540, 637
BmeT110I CYCGRG 1 cut(s) 297
BmgT120I GGNCC 4 cut(s) 55, 348, 376, 499
BmiI GGNNCC 2 cut(s) 501, 641
BmrFI CCNGG 6 cut(s) 204, 267, 438, 503, 540, 637
BmrI ACTGGG 1 cut(s) 62
BmsI GCATC 1 cut(s) 301
BmuI ACTGGG 1 cut(s) 62
BplI GAGNNNNNCTC 2 cut(s) 280, 312
Bpu10I CCTNAGC 1 cut(s) 35
BpuEI CTTGAG 3 cut(s) 307, 356, 544
BpuMI CCSGG 3 cut(s) 204, 267, 503
BsaI GGTCTC 1 cut(s) 470
BsaJI CCNNGG 6 cut(s) 279, 344, 436, 501, 538, 652
Bsc4I CCNNNNNNNGG 1 cut(s) 508
Bse118I RCCGGY 1 cut(s) 378
Bse1I ACTGG 1 cut(s) 57
BseBI CCWGG 3 cut(s) 438, 540, 637
BseDI CCNNGG 6 cut(s) 279, 344, 436, 501, 538, 652
BseLI CCNNNNNNNGG 1 cut(s) 508
BseMII CTCAG 3 cut(s) 49, 131, 366
BseNI ACTGG 1 cut(s) 57
BseRI GAGGAG 1 cut(s) 160
BseSI GKGCMC 2 cut(s) 142, 547
BsgI GTGCAG 1 cut(s) 317
Bsh1236I CGCG 1 cut(s) 254
BshFI GGCC 4 cut(s) 57, 350, 378, 500
BsiHKAI GWGCWC 2 cut(s) 142, 547
BsiHKCI CYCGRG 1 cut(s) 297
BsiSI CCGG 5 cut(s) 204, 266, 379, 503, 519
BslFI GGGAC 1 cut(s) 311
BslI CCNNNNNNNGG 1 cut(s) 508
BsmAI GTCTC 2 cut(s) 470, 561
BsmFI GGGAC 1 cut(s) 311
BsnI GGCC 4 cut(s) 57, 350, 378, 500
Bso31I GGTCTC 1 cut(s) 470
BsoBI CYCGRG 1 cut(s) 297
Bsp1286I GDGCHC 2 cut(s) 142, 547
Bsp1407I TGTACA 1 cut(s) 480
Bsp143I GATC 3 cut(s) 76, 622, 639
BspACI CCGC 1 cut(s) 254
BspANI GGCC 4 cut(s) 57, 350, 378, 500
BspCNI CTCAG 3 cut(s) 48, 130, 365
BspFNI CGCG 1 cut(s) 254
BspLI GGNNCC 2 cut(s) 501, 641
BspMI ACCTGC 1 cut(s) 374
BspPI GGATC 3 cut(s) 71, 634, 647
BspQI GCTCTTC 1 cut(s) 51
BspTNI GGTCTC 1 cut(s) 470
BsrFI RCCGGY 1 cut(s) 378
BsrGI TGTACA 1 cut(s) 480
BsrI ACTGG 1 cut(s) 57
BssAI RCCGGY 1 cut(s) 378
BssECI CCNNGG 6 cut(s) 279, 344, 436, 501, 538, 652
BssMI GATC 3 cut(s) 76, 622, 639
BssT1I CCWWGG 1 cut(s) 279
Bst2UI CCWGG 3 cut(s) 438, 540, 637
Bst4CI ACNGT 2 cut(s) 137, 413
Bst6I CTCTTC 2 cut(s) 19, 51
BstAUI TGTACA 1 cut(s) 480
BstC8I GCNNGC 1 cut(s) 380
BstDEI CTNAG 3 cut(s) 35, 117, 352
BstDSI CCRYGG 1 cut(s) 344
BstEII GGTNACC 1 cut(s) 358
BstFNI CGCG 1 cut(s) 254
BstKTI GATC 3 cut(s) 79, 625, 642
BstMAI GTCTC 2 cut(s) 470, 561
BstMBI GATC 3 cut(s) 76, 622, 639
BstMWI GCNNNNNNNGC 2 cut(s) 375, 528
BstNI CCWGG 3 cut(s) 438, 540, 637
BstPI GGTNACC 1 cut(s) 358
BstSCI CCNGG 6 cut(s) 202, 265, 436, 501, 538, 635
BstSLI GKGCMC 2 cut(s) 142, 547
BstUI CGCG 1 cut(s) 254
BstX2I RGATCY 2 cut(s) 76, 639
BstXI CCANNNNNNTGG 1 cut(s) 539
BstYI RGATCY 2 cut(s) 76, 639
BsuRI GGCC 4 cut(s) 57, 350, 378, 500
BtgI CCRYGG 1 cut(s) 344
BtsI GCAGTG 2 cut(s) 513, 570
BtsIMutI CAGTG 2 cut(s) 513, 570
BveI ACCTGC 1 cut(s) 374
Cac8I GCNNGC 1 cut(s) 380
Cfr10I RCCGGY 1 cut(s) 378
Cfr13I GGNCC 4 cut(s) 55, 348, 376, 499
Csp6I GTAC 1 cut(s) 481
CviAII CATG 2 cut(s) 271, 292
CviQI GTAC 1 cut(s) 481
DdeI CTNAG 3 cut(s) 35, 117, 352
DpnI GATC 3 cut(s) 78, 624, 641
DpnII GATC 3 cut(s) 76, 622, 639
Eam1104I CTCTTC 2 cut(s) 19, 51
EarI CTCTTC 2 cut(s) 19, 51
Eco130I CCWWGG 1 cut(s) 279
Eco31I GGTCTC 1 cut(s) 470
Eco88I CYCGRG 1 cut(s) 297
Eco91I GGTNACC 1 cut(s) 358
EcoO109I RGGNCCY 1 cut(s) 499
EcoO65I GGTNACC 1 cut(s) 358
EcoRII CCWGG 3 cut(s) 436, 538, 635
EcoT14I CCWWGG 1 cut(s) 279
ErhI CCWWGG 1 cut(s) 279
FaeI CATG 2 cut(s) 274, 295
FaiI YATR 6 cut(s) 98, 123, 272, 293, 308, 489
FaqI GGGAC 1 cut(s) 311
FatI CATG 2 cut(s) 270, 291
FspBI CTAG 2 cut(s) 161, 560
HaeIII GGCC 4 cut(s) 57, 350, 378, 500
HapII CCGG 5 cut(s) 204, 266, 379, 503, 519
Hin1II CATG 2 cut(s) 274, 295
HincII GTYRAC 1 cut(s) 304
HindII GTYRAC 1 cut(s) 304
HinfI GANTC 3 cut(s) 443, 491, 592
HpaII CCGG 5 cut(s) 204, 266, 379, 503, 519
HphI GGTGA 1 cut(s) 412
Hpy166II GTNNAC 5 cut(s) 127, 140, 304, 400, 545
Hpy188I TCNGA 4 cut(s) 355, 597, 644, 656
Hpy188III TCNNGA 2 cut(s) 86, 626
Hpy8I GTNNAC 5 cut(s) 127, 140, 304, 400, 545
HpyCH4III ACNGT 2 cut(s) 137, 413
HpyCH4IV ACGT 1 cut(s) 630
HpyCH4V TGCA 6 cut(s) 96, 140, 147, 334, 545, 575
HpyF10VI GCNNNNNNNGC 2 cut(s) 375, 528
HpyF3I CTNAG 3 cut(s) 35, 117, 352
HpySE526I ACGT 1 cut(s) 630
Hsp92II CATG 2 cut(s) 274, 295
KroI GCCGGC 1 cut(s) 378
KroNI GCCGGC 1 cut(s) 380
Kzo9I GATC 3 cut(s) 76, 622, 639
LguI GCTCTTC 1 cut(s) 51
LweI GCATC 1 cut(s) 301
MaeI CTAG 2 cut(s) 161, 560
MaeII ACGT 1 cut(s) 630
MaeIII GTNAC 2 cut(s) 238, 358
MalI GATC 3 cut(s) 78, 624, 641
MboI GATC 3 cut(s) 76, 622, 639
MboII GAAGA 2 cut(s) 6, 38
MfeI CAATTG 1 cut(s) 585
MflI RGATCY 2 cut(s) 76, 639
MhlI GDGCHC 2 cut(s) 142, 547
MluCI AATT 4 cut(s) 259, 428, 585, 615
MlyI GAGTC 1 cut(s) 452
MroNI GCCGGC 1 cut(s) 378
MseI TTAA 3 cut(s) 150, 431, 661
MspI CCGG 5 cut(s) 204, 266, 379, 503, 519
MspR9I CCNGG 6 cut(s) 204, 267, 438, 503, 540, 637
MunI CAATTG 1 cut(s) 585
MvaI CCWGG 3 cut(s) 438, 540, 637
MvnI CGCG 1 cut(s) 254
MwoI GCNNNNNNNGC 2 cut(s) 375, 528
NaeI GCCGGC 1 cut(s) 380
NciI CCSGG 3 cut(s) 204, 267, 503
NdeII GATC 3 cut(s) 76, 622, 639
NgoMIV GCCGGC 1 cut(s) 378
NlaIII CATG 2 cut(s) 274, 295
NlaIV GGNNCC 2 cut(s) 501, 641
PaeR7I CTCGAG 1 cut(s) 297
PaqCI CACCTGC 1 cut(s) 374
PciSI GCTCTTC 1 cut(s) 51
PdiI GCCGGC 1 cut(s) 380
PfeI GAWTC 2 cut(s) 491, 592
PleI GAGTC 1 cut(s) 451
PpsI GAGTC 1 cut(s) 451
PshBI ATTAAT 1 cut(s) 150
Psp6I CCWGG 3 cut(s) 436, 538, 635
PspEI GGTNACC 1 cut(s) 358
PspGI CCWGG 3 cut(s) 436, 538, 635
PspN4I GGNNCC 2 cut(s) 501, 641
PspPI GGNCC 4 cut(s) 55, 348, 376, 499
PspXI VCTCGAGB 1 cut(s) 297
PsuI RGATCY 2 cut(s) 76, 639
RsaI GTAC 1 cut(s) 482
RsaNI GTAC 1 cut(s) 481
SapI GCTCTTC 1 cut(s) 51
SaqAI TTAA 3 cut(s) 150, 431, 661
Sau3AI GATC 3 cut(s) 76, 622, 639
Sau96I GGNCC 4 cut(s) 55, 348, 376, 499
SchI GAGTC 1 cut(s) 452
ScrFI CCNGG 6 cut(s) 204, 267, 438, 503, 540, 637
SduI GDGCHC 2 cut(s) 142, 547
SetI ASST 7 cut(s) 41, 281, 360, 368, 633, 654, 661
SfaNI GCATC 1 cut(s) 301
Sfr274I CTCGAG 1 cut(s) 297
SlaI CTCGAG 1 cut(s) 297
SmlI CTYRAG 4 cut(s) 286, 297, 371, 523
SmoI CTYRAG 4 cut(s) 286, 297, 371, 523
Sse9I AATT 4 cut(s) 259, 428, 585, 615
SsiI CCGC 1 cut(s) 254
SspMI CTAG 2 cut(s) 161, 560
StyD4I CCNGG 6 cut(s) 202, 265, 436, 501, 538, 635
StyI CCWWGG 1 cut(s) 279
TaaI ACNGT 2 cut(s) 137, 413
TaiI ACGT 1 cut(s) 633
TaqI TCGA 1 cut(s) 298
TasI AATT 4 cut(s) 259, 428, 585, 615
TatI WGTACW 1 cut(s) 480
TfiI GAWTC 2 cut(s) 491, 592
Tru1I TTAA 3 cut(s) 150, 431, 661
Tru9I TTAA 3 cut(s) 150, 431, 661
TscAI CASTG 2 cut(s) 513, 577
TspDTI ATGAA 2 cut(s) 287, 461
TspRI CASTG 2 cut(s) 513, 577
VneI GTGCAC 2 cut(s) 138, 543
VspI ATTAAT 1 cut(s) 150
XhoI CTCGAG 1 cut(s) 297
XspI CTAG 2 cut(s) 161, 560
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.