Rmu_sc0006845.1_g000007

Germin-like protein subfamily 1 member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006845.1
OG0016191
Physical Location & Seq
Reverse (-)
47585 .. 48250
666 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006845.1_g000007.1.cds

Sequence Viewer

Length: 666 bp
atgagaaagaactcttcctttctccatttattcctcagctttgcttttctactgggcctagccaaacccgacccagatccacttcaagactactgcatagcagatactaaaacccctcagtatttttatttcaacggtgcaccctgcattaatccagagctagcagtctcctcccatttctctacatcggtcctatccaaacccggaaacactaaagccaaccctttcggctttaatgtaactctaaccaatgcgaacaatttaccgggcatgaacaccttgggcttgagcatggcccgagttgacatagatgctaatgggattgtccctctgcacacacacccacgggcctcagaggtaaccatctgcctcaagggccggctttttgtgggctttgtggacacatctaaccgtgttttcagccaacaattaaaccctggtgagtcatttgtttttccaaagggtctcattcattttctgtacaactatgattcaaaggctccggcagtggcattgtccggcttgagtagccaaaaccctggtgcacagattgtgtctctagcctcattcacttcaaagcctccaattgagattcagatattgaaaaacagttttcaaattaccgatcaagacgttgtcaggatccgaaagaacctcggaggttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

221

Amino Acids

24.06

Weight (kDa)

9.01

Isoelectric Point (pI)

22.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016191)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10460
fragaria_vesca FvH4_4g35250
malus_domestica MD16G1084100.v1.1
prunus_persica Prupe.1G261900_v2.0.a1
pyrus_communis pycom16g07310
rosa_chinensis RchiOBHm_Chr4g0444861
rosa_laevigata RLG00000005794
rosa_multiflora Rmu_sc0006845.1_g000007
rosa_roxburghii Rroxscaffold_5G00385350
rosa_rugosa Rorug04G0355700
rosa_samantha Rh4AG417200 Rh4BG429000 Rh4CG443700 Rh4DG424900
rosa_wichuraiana Rw4G035760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 71, 637, 650
AfaI GTAC 1 cut(s) 482
AgsI TTSAA 6 cut(s) 86, 133, 495, 576, 604, 617
AjnI CCWGG 2 cut(s) 436, 538
AluBI AGCT 2 cut(s) 39, 160
AluI AGCT 2 cut(s) 39, 160
Alw21I GWGCWC 2 cut(s) 142, 547
Alw26I GTCTC 3 cut(s) 172, 470, 561
Alw44I GTGCAC 2 cut(s) 138, 543
AlwI GGATC 3 cut(s) 71, 637, 650
Ama87I CYCGRG 1 cut(s) 297
AoxI GGCC 4 cut(s) 55, 294, 348, 376
ApaLI GTGCAC 2 cut(s) 138, 543
AseI ATTAAT 1 cut(s) 150
AspS9I GGNCC 5 cut(s) 55, 190, 295, 348, 376
AsuC2I CCSGG 2 cut(s) 204, 267
AsuHPI GGTGA 1 cut(s) 452
AsuNHI GCTAGC 1 cut(s) 160
AvaI CYCGRG 1 cut(s) 297
AvaII GGWCC 1 cut(s) 190
BaeGI GKGCMC 2 cut(s) 142, 547
BamHI GGATCC 1 cut(s) 642
Bbv12I GWGCWC 2 cut(s) 142, 547
BbvCI CCTCAGC 1 cut(s) 35
BccI CCATC 1 cut(s) 371
BciT130I CCWGG 2 cut(s) 438, 540
BcnI CCSGG 2 cut(s) 204, 267
BcoDI GTCTC 3 cut(s) 172, 470, 561
BfaI CTAG 3 cut(s) 59, 161, 560
BglI GCCNNNNNGGC 1 cut(s) 375
Bme1390I CCNGG 4 cut(s) 204, 267, 438, 540
Bme18I GGWCC 1 cut(s) 190
BmeT110I CYCGRG 1 cut(s) 297
BmgT120I GGNCC 5 cut(s) 55, 190, 295, 348, 376
BmiI GGNNCC 2 cut(s) 501, 644
BmrFI CCNGG 4 cut(s) 204, 267, 438, 540
BmrI ACTGGG 1 cut(s) 62
BmsI GCATC 1 cut(s) 301
BmtI GCTAGC 1 cut(s) 164
BmuI ACTGGG 1 cut(s) 62
Bpu10I CCTNAGC 1 cut(s) 35
BpuEI CTTGAG 3 cut(s) 307, 356, 544
BpuMI CCSGG 2 cut(s) 204, 267
BsaI GGTCTC 1 cut(s) 470
BsaJI CCNNGG 5 cut(s) 279, 344, 436, 538, 655
Bse118I RCCGGY 1 cut(s) 378
Bse1I ACTGG 1 cut(s) 57
BseBI CCWGG 2 cut(s) 438, 540
BseDI CCNNGG 5 cut(s) 279, 344, 436, 538, 655
BseMII CTCAG 3 cut(s) 49, 131, 366
BseNI ACTGG 1 cut(s) 57
BseRI GAGGAG 1 cut(s) 160
BseSI GKGCMC 2 cut(s) 142, 547
BsgI GTGCAG 1 cut(s) 317
BshFI GGCC 4 cut(s) 57, 296, 350, 378
BsiHKAI GWGCWC 2 cut(s) 142, 547
BsiHKCI CYCGRG 1 cut(s) 297
BsiSI CCGG 5 cut(s) 204, 266, 379, 503, 519
BslFI GGGAC 1 cut(s) 311
BsmAI GTCTC 3 cut(s) 172, 470, 561
BsmFI GGGAC 1 cut(s) 311
BsnI GGCC 4 cut(s) 57, 296, 350, 378
Bso31I GGTCTC 1 cut(s) 470
BsoBI CYCGRG 1 cut(s) 297
Bsp1286I GDGCHC 2 cut(s) 142, 547
Bsp1407I TGTACA 1 cut(s) 480
Bsp143I GATC 3 cut(s) 76, 625, 642
BspANI GGCC 4 cut(s) 57, 296, 350, 378
BspCNI CTCAG 3 cut(s) 48, 130, 365
BspLI GGNNCC 2 cut(s) 501, 644
BspOI GCTAGC 1 cut(s) 164
BspPI GGATC 3 cut(s) 71, 637, 650
BspTNI GGTCTC 1 cut(s) 470
BsrFI RCCGGY 1 cut(s) 378
BsrGI TGTACA 1 cut(s) 480
BsrI ACTGG 1 cut(s) 57
BssAI RCCGGY 1 cut(s) 378
BssECI CCNNGG 5 cut(s) 279, 344, 436, 538, 655
BssMI GATC 3 cut(s) 76, 625, 642
BssT1I CCWWGG 1 cut(s) 279
Bst2UI CCWGG 2 cut(s) 438, 540
Bst4CI ACNGT 3 cut(s) 137, 413, 611
Bst6I CTCTTC 1 cut(s) 19
BstAUI TGTACA 1 cut(s) 480
BstC8I GCNNGC 2 cut(s) 162, 380
BstDEI CTNAG 3 cut(s) 35, 117, 352
BstDSI CCRYGG 1 cut(s) 344
BstEII GGTNACC 1 cut(s) 358
BstKTI GATC 3 cut(s) 79, 628, 645
BstMAI GTCTC 3 cut(s) 172, 470, 561
BstMBI GATC 3 cut(s) 76, 625, 642
BstMWI GCNNNNNNNGC 2 cut(s) 375, 528
BstNI CCWGG 2 cut(s) 438, 540
BstPI GGTNACC 1 cut(s) 358
BstSCI CCNGG 4 cut(s) 202, 265, 436, 538
BstSLI GKGCMC 2 cut(s) 142, 547
BstX2I RGATCY 2 cut(s) 76, 642
BstXI CCANNNNNNTGG 1 cut(s) 539
BstYI RGATCY 2 cut(s) 76, 642
BsuRI GGCC 4 cut(s) 57, 296, 350, 378
BtgI CCRYGG 1 cut(s) 344
BtsI GCAGTG 1 cut(s) 513
BtsIMutI CAGTG 1 cut(s) 513
Cac8I GCNNGC 2 cut(s) 162, 380
Cfr10I RCCGGY 1 cut(s) 378
Cfr13I GGNCC 5 cut(s) 55, 190, 295, 348, 376
Csp6I GTAC 1 cut(s) 481
CviAII CATG 2 cut(s) 271, 292
CviQI GTAC 1 cut(s) 481
DdeI CTNAG 3 cut(s) 35, 117, 352
DpnI GATC 3 cut(s) 78, 627, 644
DpnII GATC 3 cut(s) 76, 625, 642
Eam1104I CTCTTC 1 cut(s) 19
EarI CTCTTC 1 cut(s) 19
Eco130I CCWWGG 1 cut(s) 279
Eco31I GGTCTC 1 cut(s) 470
Eco47I GGWCC 1 cut(s) 190
Eco88I CYCGRG 1 cut(s) 297
Eco91I GGTNACC 1 cut(s) 358
EcoO65I GGTNACC 1 cut(s) 358
EcoRII CCWGG 2 cut(s) 436, 538
EcoT14I CCWWGG 1 cut(s) 279
ErhI CCWWGG 1 cut(s) 279
FaeI CATG 2 cut(s) 274, 295
FaiI YATR 5 cut(s) 98, 272, 293, 308, 489
FaqI GGGAC 1 cut(s) 311
FatI CATG 2 cut(s) 270, 291
FspBI CTAG 3 cut(s) 59, 161, 560
HaeIII GGCC 4 cut(s) 57, 296, 350, 378
HapII CCGG 5 cut(s) 204, 266, 379, 503, 519
Hin1II CATG 2 cut(s) 274, 295
HincII GTYRAC 1 cut(s) 304
HindII GTYRAC 1 cut(s) 304
HinfI GANTC 3 cut(s) 443, 491, 592
HpaII CCGG 5 cut(s) 204, 266, 379, 503, 519
HphI GGTGA 1 cut(s) 452
Hpy166II GTNNAC 4 cut(s) 140, 304, 400, 545
Hpy188I TCNGA 4 cut(s) 355, 597, 647, 659
Hpy188III TCNNGA 4 cut(s) 86, 155, 629, 640
Hpy8I GTNNAC 4 cut(s) 140, 304, 400, 545
HpyCH4III ACNGT 3 cut(s) 137, 413, 611
HpyCH4IV ACGT 1 cut(s) 633
HpyCH4V TGCA 5 cut(s) 96, 140, 147, 334, 545
HpyF10VI GCNNNNNNNGC 2 cut(s) 375, 528
HpyF3I CTNAG 3 cut(s) 35, 117, 352
HpySE526I ACGT 1 cut(s) 633
Hsp92II CATG 2 cut(s) 274, 295
KroI GCCGGC 1 cut(s) 378
KroNI GCCGGC 1 cut(s) 380
Kzo9I GATC 3 cut(s) 76, 625, 642
LmnI GCTCC 1 cut(s) 505
LweI GCATC 1 cut(s) 301
MaeI CTAG 3 cut(s) 59, 161, 560
MaeII ACGT 1 cut(s) 633
MaeIII GTNAC 2 cut(s) 238, 358
MalI GATC 3 cut(s) 78, 627, 644
MboI GATC 3 cut(s) 76, 625, 642
MboII GAAGA 1 cut(s) 6
MfeI CAATTG 1 cut(s) 585
MflI RGATCY 2 cut(s) 76, 642
MhlI GDGCHC 2 cut(s) 142, 547
MluCI AATT 4 cut(s) 259, 428, 585, 618
MlyI GAGTC 1 cut(s) 452
MroNI GCCGGC 1 cut(s) 378
MseI TTAA 4 cut(s) 150, 234, 431, 664
MspI CCGG 5 cut(s) 204, 266, 379, 503, 519
MspR9I CCNGG 4 cut(s) 204, 267, 438, 540
MunI CAATTG 1 cut(s) 585
MvaI CCWGG 2 cut(s) 438, 540
MwoI GCNNNNNNNGC 2 cut(s) 375, 528
NaeI GCCGGC 1 cut(s) 380
NciI CCSGG 2 cut(s) 204, 267
NdeII GATC 3 cut(s) 76, 625, 642
NgoMIV GCCGGC 1 cut(s) 378
NheI GCTAGC 1 cut(s) 160
NlaIII CATG 2 cut(s) 274, 295
NlaIV GGNNCC 2 cut(s) 501, 644
PdiI GCCGGC 1 cut(s) 380
PfeI GAWTC 2 cut(s) 491, 592
PflFI GACNNNGTC 1 cut(s) 635
PleI GAGTC 1 cut(s) 451
PpsI GAGTC 1 cut(s) 451
PshBI ATTAAT 1 cut(s) 150
Psp6I CCWGG 2 cut(s) 436, 538
PspEI GGTNACC 1 cut(s) 358
PspGI CCWGG 2 cut(s) 436, 538
PspN4I GGNNCC 2 cut(s) 501, 644
PspPI GGNCC 5 cut(s) 55, 190, 295, 348, 376
PsuI RGATCY 2 cut(s) 76, 642
PsyI GACNNNGTC 1 cut(s) 635
RsaI GTAC 1 cut(s) 482
RsaNI GTAC 1 cut(s) 481
SaqAI TTAA 4 cut(s) 150, 234, 431, 664
Sau3AI GATC 3 cut(s) 76, 625, 642
Sau96I GGNCC 5 cut(s) 55, 190, 295, 348, 376
SchI GAGTC 1 cut(s) 452
ScrFI CCNGG 4 cut(s) 204, 267, 438, 540
SduI GDGCHC 2 cut(s) 142, 547
SetI ASST 7 cut(s) 41, 162, 281, 360, 636, 657, 664
SfaNI GCATC 1 cut(s) 301
SinI GGWCC 1 cut(s) 190
SmlI CTYRAG 3 cut(s) 286, 371, 523
SmoI CTYRAG 3 cut(s) 286, 371, 523
Sse9I AATT 4 cut(s) 259, 428, 585, 618
SspMI CTAG 3 cut(s) 59, 161, 560
StyD4I CCNGG 4 cut(s) 202, 265, 436, 538
StyI CCWWGG 1 cut(s) 279
TaaI ACNGT 3 cut(s) 137, 413, 611
TaiI ACGT 1 cut(s) 636
TaqII GACCGA 1 cut(s) 178
TasI AATT 4 cut(s) 259, 428, 585, 618
TatI WGTACW 1 cut(s) 480
TfiI GAWTC 2 cut(s) 491, 592
Tru1I TTAA 4 cut(s) 150, 234, 431, 664
Tru9I TTAA 4 cut(s) 150, 234, 431, 664
TscAI CASTG 1 cut(s) 513
TspDTI ATGAA 2 cut(s) 287, 461
TspRI CASTG 1 cut(s) 513
Tth111I GACNNNGTC 1 cut(s) 635
VneI GTGCAC 2 cut(s) 138, 543
VpaK11BI GGWCC 1 cut(s) 190
VspI ATTAAT 1 cut(s) 150
XspI CTAG 3 cut(s) 59, 161, 560
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.