Prupe.1G261900_v2.0.a1

Germin-like protein subfamily 1 member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0016191
Physical Location & Seq
Forward (+)
27064215 .. 27065166
952 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G261900.1

Sequence Viewer

Length: 666 bp
ATGAGAATCAATTCTTCCTTTGTCCAATTATTTGTCACCCTAGCTCTTCTATTGGGCCAGGCCAAACCCGACCCGGATCCGCTTCAGGATTACTGCGTAGCAGACACAAAAATTCCCCAGTCATTTTACCTCAATGGTGCACCCTGCATTAATCCAAAGCTAGCAGCCTCATCCCATTTCACCACATCTGTCCTATCCAAGCCAGGCAACCCAAAAGCTAACCCTTTCGGGTTCAACGCCACCCTGACGAACACGCTTAACCTACCCGGGGTCAACACATTGGGCCTGACCATGGCCCGGGTTGACATAGCGGCCAATGGGATTGTGCCTCCACATTTGCACCCAAGGGCCTCAGAAGTCGCAATCTGCCTCAAAGGGCTCCTTCTTGTGGGCTTTGTGGACACCTCCAACCGTGTGTTTACCCAGCAACTGAAGCCTGGTGAGTCATTTGTGTTCCCAAAGGCCCTCGTTCATTTTCTGTACAACTACGACTCCGCGAACCCAGCAGTGGCCTTGGCCGGGTTCAGTAGCCAGAACCCTGGTGTAGAGATTGTTTCACTTGCCACCTTCACTTCAAAGCCTTCAATCCCAGTTGAGATACTGAAGAAAGCTTTTCAAGTTAGTGACCTGGACGTTGCCAGGATGCGAAAGAACCTGGGAGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

222

Amino Acids

23.64

Weight (kDa)

9.2

Isoelectric Point (pI)

20.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016191)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10460
fragaria_vesca FvH4_4g35250
malus_domestica MD16G1084100.v1.1
prunus_persica Prupe.1G261900_v2.0.a1
pyrus_communis pycom16g07310
rosa_chinensis RchiOBHm_Chr4g0444861
rosa_laevigata RLG00000005794
rosa_multiflora Rmu_sc0006845.1_g000007
rosa_roxburghii Rroxscaffold_5G00385350
rosa_rugosa Rorug04G0355700
rosa_samantha Rh4AG417200 Rh4BG429000 Rh4CG443700 Rh4DG424900
rosa_wichuraiana Rw4G035760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 497
AciI CCGC 3 cut(s) 80, 311, 495
AclWI GGATC 2 cut(s) 71, 84
AcoI YGGCCR 2 cut(s) 312, 516
AcsI RAATTY 1 cut(s) 111
AcuI CTGAAG 3 cut(s) 68, 452, 623
AfaI GTAC 1 cut(s) 482
AfiI CCNNNNNNNGG 6 cut(s) 268, 292, 297, 388, 508, 519
AgsI TTSAA 4 cut(s) 235, 576, 585, 617
AjnI CCWGG 7 cut(s) 57, 202, 436, 538, 627, 638, 654
AluBI AGCT 4 cut(s) 44, 160, 218, 611
AluI AGCT 4 cut(s) 44, 160, 218, 611
Alw21I GWGCWC 1 cut(s) 142
Alw44I GTGCAC 1 cut(s) 138
AlwI GGATC 2 cut(s) 71, 84
AlwNI CAGNNNCTG 1 cut(s) 430
Ama87I CYCGRG 2 cut(s) 266, 297
AoxI GGCC 9 cut(s) 55, 60, 283, 294, 312, 348, 462, 510, 516
ApaLI GTGCAC 1 cut(s) 138
ApeKI GCWGC 1 cut(s) 164
ApoI RAATTY 1 cut(s) 111
AseI ATTAAT 1 cut(s) 150
Asp700I GAANNNNTTC 1 cut(s) 10
AspS9I GGNCC 5 cut(s) 55, 283, 295, 348, 463
AsuC2I CCSGG 6 cut(s) 74, 267, 268, 298, 299, 520
AsuHPI GGTGA 3 cut(s) 28, 172, 452
AsuNHI GCTAGC 1 cut(s) 160
AvaI CYCGRG 2 cut(s) 266, 297
BaeGI GKGCMC 1 cut(s) 142
BamHI GGATCC 1 cut(s) 76
BanII GRGCYC 1 cut(s) 381
Bbv12I GWGCWC 1 cut(s) 142
BbvI GCAGC 1 cut(s) 176
BciT130I CCWGG 7 cut(s) 59, 204, 438, 540, 629, 640, 656
BcnI CCSGG 6 cut(s) 74, 267, 268, 298, 299, 520
BfaI CTAG 2 cut(s) 41, 161
BisI GCNGC 2 cut(s) 165, 312
BlsI GCNGC 2 cut(s) 166, 313
BmeT110I CYCGRG 2 cut(s) 266, 297
BmgT120I GGNCC 5 cut(s) 55, 283, 295, 348, 463
BmiI GGNNCC 2 cut(s) 78, 380
BmrI ACTGGG 2 cut(s) 112, 584
BmsI GCATC 1 cut(s) 633
BmtI GCTAGC 1 cut(s) 164
BmuI ACTGGG 2 cut(s) 112, 584
BpuMI CCSGG 6 cut(s) 74, 267, 268, 298, 299, 520
BsaJI CCNNGG 8 cut(s) 266, 267, 291, 297, 344, 513, 538, 655
BsaXI ACNNNNNCTCC 2 cut(s) 476, 506
Bsc4I CCNNNNNNNGG 6 cut(s) 268, 292, 297, 388, 508, 519
Bse1I ACTGG 2 cut(s) 118, 590
BseBI CCWGG 7 cut(s) 59, 204, 438, 540, 629, 640, 656
BseDI CCNNGG 8 cut(s) 266, 267, 291, 297, 344, 513, 538, 655
BseGI GGATG 2 cut(s) 170, 648
BseLI CCNNNNNNNGG 6 cut(s) 268, 292, 297, 388, 508, 519
BseMII CTCAG 1 cut(s) 366
BseNI ACTGG 2 cut(s) 118, 590
BseSI GKGCMC 1 cut(s) 142
BseXI GCAGC 1 cut(s) 176
BseYI CCCAGC 2 cut(s) 423, 502
Bsh1236I CGCG 1 cut(s) 497
BshFI GGCC 9 cut(s) 57, 62, 285, 296, 314, 350, 464, 512, 518
BsiHKAI GWGCWC 1 cut(s) 142
BsiHKCI CYCGRG 2 cut(s) 266, 297
BsiSI CCGG 4 cut(s) 74, 267, 298, 519
BslI CCNNNNNNNGG 6 cut(s) 268, 292, 297, 388, 508, 519
BsnI GGCC 9 cut(s) 57, 62, 285, 296, 314, 350, 464, 512, 518
BsoBI CYCGRG 2 cut(s) 266, 297
Bsp1286I GDGCHC 2 cut(s) 142, 381
Bsp1407I TGTACA 1 cut(s) 480
Bsp143I GATC 1 cut(s) 76
Bsp19I CCATGG 1 cut(s) 291
BspACI CCGC 3 cut(s) 80, 311, 495
BspANI GGCC 9 cut(s) 57, 62, 285, 296, 314, 350, 464, 512, 518
BspCNI CTCAG 1 cut(s) 365
BspFNI CGCG 1 cut(s) 497
BspLI GGNNCC 2 cut(s) 78, 380
BspOI GCTAGC 1 cut(s) 164
BspPI GGATC 2 cut(s) 71, 84
BspQI GCTCTTC 1 cut(s) 51
BsrGI TGTACA 1 cut(s) 480
BsrI ACTGG 2 cut(s) 118, 590
BssECI CCNNGG 8 cut(s) 266, 267, 291, 297, 344, 513, 538, 655
BssMI GATC 1 cut(s) 76
BssT1I CCWWGG 3 cut(s) 291, 344, 513
Bst2UI CCWGG 7 cut(s) 59, 204, 438, 540, 629, 640, 656
Bst4CI ACNGT 1 cut(s) 413
Bst6I CTCTTC 1 cut(s) 51
BstAUI TGTACA 1 cut(s) 480
BstC8I GCNNGC 1 cut(s) 162
BstDEI CTNAG 1 cut(s) 352
BstDSI CCRYGG 1 cut(s) 291
BstF5I GGATG 2 cut(s) 170, 648
BstFNI CGCG 1 cut(s) 497
BstKTI GATC 1 cut(s) 79
BstMBI GATC 1 cut(s) 76
BstMWI GCNNNNNNNGC 2 cut(s) 433, 503
BstNI CCWGG 7 cut(s) 59, 204, 438, 540, 629, 640, 656
BstSLI GKGCMC 1 cut(s) 142
BstUI CGCG 1 cut(s) 497
BstV1I GCAGC 1 cut(s) 176
BstX2I RGATCY 1 cut(s) 76
BstXI CCANNNNNNTGG 1 cut(s) 539
BstYI RGATCY 1 cut(s) 76
BsuRI GGCC 9 cut(s) 57, 62, 285, 296, 314, 350, 464, 512, 518
BtgI CCRYGG 1 cut(s) 291
BtsCI GGATG 2 cut(s) 170, 648
BtsI GCAGTG 1 cut(s) 513
BtsIMutI CAGTG 1 cut(s) 513
Cac8I GCNNGC 1 cut(s) 162
CaiI CAGNNNCTG 1 cut(s) 430
Cfr13I GGNCC 5 cut(s) 55, 283, 295, 348, 463
Cfr9I CCCGGG 2 cut(s) 266, 297
Csp6I GTAC 1 cut(s) 481
CviAII CATG 1 cut(s) 292
CviQI GTAC 1 cut(s) 481
DdeI CTNAG 1 cut(s) 352
DpnI GATC 1 cut(s) 78
DpnII GATC 1 cut(s) 76
EaeI YGGCCR 2 cut(s) 312, 516
Eam1104I CTCTTC 1 cut(s) 51
EarI CTCTTC 1 cut(s) 51
Eco130I CCWWGG 3 cut(s) 291, 344, 513
Eco24I GRGCYC 1 cut(s) 381
Eco57I CTGAAG 3 cut(s) 68, 452, 623
Eco88I CYCGRG 2 cut(s) 266, 297
EcoO109I RGGNCCY 2 cut(s) 348, 463
EcoRII CCWGG 7 cut(s) 57, 202, 436, 538, 627, 638, 654
EcoT14I CCWWGG 3 cut(s) 291, 344, 513
EcoT38I GRGCYC 1 cut(s) 381
ErhI CCWWGG 3 cut(s) 291, 344, 513
FaeI CATG 1 cut(s) 295
FaiI YATR 2 cut(s) 293, 308
FalI AAGNNNNNCTT 2 cut(s) 366, 398
FatI CATG 1 cut(s) 291
Fnu4HI GCNGC 2 cut(s) 165, 312
FokI GGATG 2 cut(s) 157, 655
FriOI GRGCYC 1 cut(s) 381
Fsp4HI GCNGC 2 cut(s) 165, 312
FspBI CTAG 2 cut(s) 41, 161
GluI GCNGC 2 cut(s) 165, 312
GsaI CCCAGC 2 cut(s) 427, 506
HaeIII GGCC 9 cut(s) 57, 62, 285, 296, 314, 350, 464, 512, 518
HapII CCGG 4 cut(s) 74, 267, 298, 519
Hin1II CATG 1 cut(s) 295
HincII GTYRAC 2 cut(s) 274, 304
HindII GTYRAC 2 cut(s) 274, 304
HindIII AAGCTT 1 cut(s) 609
HinfI GANTC 3 cut(s) 6, 443, 491
HpaII CCGG 4 cut(s) 74, 267, 298, 519
HphI GGTGA 3 cut(s) 28, 172, 452
Hpy166II GTNNAC 5 cut(s) 140, 274, 304, 400, 420
Hpy188I TCNGA 1 cut(s) 355
Hpy188III TCNNGA 1 cut(s) 86
Hpy8I GTNNAC 5 cut(s) 140, 274, 304, 400, 420
HpyAV CCTTC 3 cut(s) 392, 577, 591
HpyCH4III ACNGT 1 cut(s) 413
HpyCH4IV ACGT 1 cut(s) 633
HpyCH4V TGCA 3 cut(s) 140, 147, 340
HpyF10VI GCNNNNNNNGC 2 cut(s) 433, 503
HpyF3I CTNAG 1 cut(s) 352
HpySE526I ACGT 1 cut(s) 633
Hsp92II CATG 1 cut(s) 295
Kzo9I GATC 1 cut(s) 76
LguI GCTCTTC 1 cut(s) 51
LmnI GCTCC 1 cut(s) 384
Lsp1109I GCAGC 1 cut(s) 176
LweI GCATC 1 cut(s) 633
MaeI CTAG 2 cut(s) 41, 161
MaeII ACGT 1 cut(s) 633
MaeIII GTNAC 2 cut(s) 34, 623
MalI GATC 1 cut(s) 78
MboI GATC 1 cut(s) 76
MboII GAAGA 3 cut(s) 6, 38, 616
MflI RGATCY 1 cut(s) 76
MhlI GDGCHC 2 cut(s) 142, 381
MluCI AATT 3 cut(s) 10, 26, 111
MlyI GAGTC 2 cut(s) 452, 485
MmeI TCCRAC 1 cut(s) 432
MnlI CCTC 8 cut(s) 140, 178, 339, 361, 380, 415, 476, 653
MroXI GAANNNNTTC 1 cut(s) 10
MseI TTAA 2 cut(s) 150, 258
MspI CCGG 4 cut(s) 74, 267, 298, 519
MvaI CCWGG 7 cut(s) 59, 204, 438, 540, 629, 640, 656
MvnI CGCG 1 cut(s) 497
MwoI GCNNNNNNNGC 2 cut(s) 433, 503
NciI CCSGG 6 cut(s) 74, 267, 268, 298, 299, 520
NcoI CCATGG 1 cut(s) 291
NdeII GATC 1 cut(s) 76
NheI GCTAGC 1 cut(s) 160
NlaIII CATG 1 cut(s) 295
NlaIV GGNNCC 2 cut(s) 78, 380
NmuCI GTSAC 2 cut(s) 34, 623
PciSI GCTCTTC 1 cut(s) 51
PdmI GAANNNNTTC 1 cut(s) 10
PfeI GAWTC 1 cut(s) 6
PkrI GCNGC 2 cut(s) 166, 313
PleI GAGTC 2 cut(s) 451, 485
PpsI GAGTC 2 cut(s) 451, 485
PshBI ATTAAT 1 cut(s) 150
Psp6I CCWGG 7 cut(s) 57, 202, 436, 538, 627, 638, 654
PspFI CCCAGC 2 cut(s) 423, 502
PspGI CCWGG 7 cut(s) 57, 202, 436, 538, 627, 638, 654
PspN4I GGNNCC 2 cut(s) 78, 380
PspPI GGNCC 5 cut(s) 55, 283, 295, 348, 463
PstNI CAGNNNCTG 1 cut(s) 430
PsuI RGATCY 1 cut(s) 76
RsaI GTAC 1 cut(s) 482
RsaNI GTAC 1 cut(s) 481
SapI GCTCTTC 1 cut(s) 51
SaqAI TTAA 2 cut(s) 150, 258
SatI GCNGC 2 cut(s) 165, 312
Sau3AI GATC 1 cut(s) 76
Sau96I GGNCC 5 cut(s) 55, 283, 295, 348, 463
SchI GAGTC 2 cut(s) 452, 485
SduI GDGCHC 2 cut(s) 142, 381
SfaNI GCATC 1 cut(s) 633
SmaI CCCGGG 2 cut(s) 268, 299
Sse9I AATT 3 cut(s) 10, 26, 111
SsiI CCGC 3 cut(s) 80, 311, 495
SspMI CTAG 2 cut(s) 41, 161
StyI CCWWGG 3 cut(s) 291, 344, 513
TaaI ACNGT 1 cut(s) 413
TaiI ACGT 1 cut(s) 636
TasI AATT 3 cut(s) 10, 26, 111
TatI WGTACW 1 cut(s) 480
TauI GCSGC 1 cut(s) 314
TfiI GAWTC 1 cut(s) 6
Tru1I TTAA 2 cut(s) 150, 258
Tru9I TTAA 2 cut(s) 150, 258
TscAI CASTG 1 cut(s) 513
TseFI GTSAC 2 cut(s) 34, 623
TseI GCWGC 1 cut(s) 164
Tsp45I GTSAC 2 cut(s) 34, 623
TspDTI ATGAA 1 cut(s) 461
TspMI CCCGGG 2 cut(s) 266, 297
TspRI CASTG 1 cut(s) 513
VneI GTGCAC 1 cut(s) 138
VspI ATTAAT 1 cut(s) 150
XapI RAATTY 1 cut(s) 111
XmaI CCCGGG 2 cut(s) 266, 297
XmnI GAANNNNTTC 1 cut(s) 10
XspI CTAG 2 cut(s) 41, 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.