Rorug04G0355700

Germin-like protein subfamily 1 member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0016191
Physical Location & Seq
Reverse (-)
52822779 .. 52831402
8624 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0355700.1

Sequence Viewer

Length: 909 bp
ATGCCGGAGATTCAGTTGGGTTCTCACACCGTAAGGTCTCATGGAGTTCAAGTGGCGAGGTTTCATATGCATGATTGGCTGATTCTGGTGGTTCTTGCGGCCATATATCTTGGTCTGAACTTGATAGAGCCTTTTCACCGCTTTGTTGGAGAGGATATGATGACAGACCTGAAATACCCATTGAAAGGCAATACAGTTCCCTTCTGGGGTGTTCCGATAATTGCAATACTGTTACCGCTTGCCATCATTGTTGTCTACTACTTCATCAGAAGGGATGTCTATGATCTGCACCATGCCATTTTAGGCCTTCTGTTTTCTGTCTTTATAACCGCTGTTTTAACTGAAGCAATCAAAGATGGTGTTGGACGACCTCGTCCAGACTTTTTTTGGCGTTGTTTCCCTGATGGAAAAGGGGTGTTTGATCCTGTCACAAAGAATGTCATGTGTACTGGAGAGAAGAGTGTCATTAAGGAAGGACACAAAAGCTTCCCAAGCGGGCATGCTTCAGGGTCCTTCGCAGGTCTTACTTTCATTGCATGGTACTTGTCAGGGAAAGTGAGGGTGTTTGATCGCAAGGGGCATGTTGCAAAACTCTGTATTGTCTTTTCTCCATTACTTCTTGCAGCACTGGTAGCAGTTTCTCGAGTTGATGACTACTGGCATCACTGGCAAGATGTTTTTGCTGGAGGTCTTCTAGGAGTCATTGTTTCTTCATTTTGTTACTTGCAATTCTTTCCACCACCATATGATACTGATGGTTGGGGACCTCATGCGTACTTCCAGATGCTGGCAGACTCTGGAAATGCTCAGCCACCGTCCACTAACGCAAGTAATCTTAATGTGCAGCAAGCAGTGCAGCAAGCAGATCGAACTGGAGAGTATATATATCCATCATCATCAGGTTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

302

Amino Acids

33.63

Weight (kDa)

6.88

Isoelectric Point (pI)

36.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAP2 PF01569 100 - 245 1.6e-28 PAP2 superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016191)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10460
fragaria_vesca FvH4_4g35250
malus_domestica MD16G1084100.v1.1
prunus_persica Prupe.1G261900_v2.0.a1
pyrus_communis pycom16g07310
rosa_chinensis RchiOBHm_Chr4g0444861
rosa_laevigata RLG00000005794
rosa_multiflora Rmu_sc0006845.1_g000007
rosa_roxburghii Rroxscaffold_5G00385350
rosa_rugosa Rorug04G0355700
rosa_samantha Rh4AG417200 Rh4BG429000 Rh4CG443700 Rh4DG424900
rosa_wichuraiana Rw4G035760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 326
AasI GACNNNNNNGTC 1 cut(s) 372
Acc36I ACCTGC 1 cut(s) 509
AccB7I CCANNNNNTGG 1 cut(s) 787
AccI GTMKAC 1 cut(s) 255
AciI CCGC 5 cut(s) 98, 139, 236, 330, 495
AclWI GGATC 1 cut(s) 416
AcoI YGGCCR 1 cut(s) 99
AcuI CTGAAG 2 cut(s) 363, 489
AfaI GTAC 3 cut(s) 448, 542, 776
AfiI CCNNNNNNNGG 3 cut(s) 185, 206, 787
AgsI TTSAA 2 cut(s) 50, 184
AluBI AGCT 1 cut(s) 486
AluI AGCT 1 cut(s) 486
Alw26I GTCTC 1 cut(s) 42
AlwI GGATC 1 cut(s) 416
AlwNI CAGNNNCTG 2 cut(s) 787, 797
Ama87I CYCGRG 1 cut(s) 642
AoxI GGCC 2 cut(s) 99, 304
ApeKI GCWGC 3 cut(s) 623, 844, 856
AspS9I GGNCC 2 cut(s) 510, 764
AsuHPI GGTGA 1 cut(s) 128
AvaI CYCGRG 1 cut(s) 642
AvaII GGWCC 2 cut(s) 510, 764
BbsI GAAGAC 1 cut(s) 683
BbvI GCAGC 3 cut(s) 635, 856, 868
BccI CCATC 5 cut(s) 251, 350, 398, 749, 898
BcgI CGANNNNNNTGC 2 cut(s) 848, 882
BcoDI GTCTC 1 cut(s) 42
BfaI CTAG 1 cut(s) 695
BfuAI ACCTGC 1 cut(s) 509
BisI GCNGC 4 cut(s) 99, 624, 845, 857
BlpI GCTNAGC 1 cut(s) 807
BlsI GCNGC 4 cut(s) 100, 625, 846, 858
Bme18I GGWCC 2 cut(s) 510, 764
BmeT110I CYCGRG 1 cut(s) 642
BmgT120I GGNCC 2 cut(s) 510, 764
BmiI GGNNCC 2 cut(s) 511, 765
BmsI GCATC 2 cut(s) 670, 774
BpiI GAAGAC 1 cut(s) 683
BpmI CTGGAG 3 cut(s) 471, 705, 894
Bpu1102I GCTNAGC 1 cut(s) 807
BsaI GGTCTC 1 cut(s) 42
BsaXI ACNNNNNCTCC 5 cut(s) 29, 36, 66, 690, 720
Bsc4I CCNNNNNNNGG 3 cut(s) 185, 206, 787
Bse1I ACTGG 5 cut(s) 454, 633, 662, 671, 877
Bse3DI GCAATG 1 cut(s) 531
BseGI GGATG 1 cut(s) 280
BseLI CCNNNNNNNGG 3 cut(s) 185, 206, 787
BseMI GCAATG 1 cut(s) 531
BseMII CTCAG 1 cut(s) 821
BseNI ACTGG 5 cut(s) 454, 633, 662, 671, 877
BseXI GCAGC 3 cut(s) 635, 856, 868
BsgI GTGCAG 3 cut(s) 272, 863, 875
BshFI GGCC 2 cut(s) 101, 306
BsiHKCI CYCGRG 1 cut(s) 642
BsiSI CCGG 1 cut(s) 5
BslFI GGGAC 1 cut(s) 777
BslI CCNNNNNNNGG 3 cut(s) 185, 206, 787
BsmAI GTCTC 1 cut(s) 42
BsmFI GGGAC 1 cut(s) 777
BsnI GGCC 2 cut(s) 101, 306
Bso31I GGTCTC 1 cut(s) 42
BsoBI CYCGRG 1 cut(s) 642
Bsp143I GATC 4 cut(s) 283, 421, 568, 865
Bsp1720I GCTNAGC 1 cut(s) 807
BspACI CCGC 5 cut(s) 98, 139, 236, 330, 495
BspANI GGCC 2 cut(s) 101, 306
BspCNI CTCAG 1 cut(s) 820
BspLI GGNNCC 2 cut(s) 511, 765
BspMI ACCTGC 1 cut(s) 509
BspPI GGATC 1 cut(s) 416
BspTNI GGTCTC 1 cut(s) 42
BsrDI GCAATG 1 cut(s) 531
BsrI ACTGG 5 cut(s) 454, 633, 662, 671, 877
BssMI GATC 4 cut(s) 283, 421, 568, 865
Bst4CI ACNGT 4 cut(s) 31, 196, 231, 816
Bst6I CTCTTC 1 cut(s) 452
BstAPI GCANNNNNTGC 1 cut(s) 853
BstC8I GCNNGC 6 cut(s) 240, 497, 501, 789, 849, 861
BstDEI CTNAG 1 cut(s) 807
BstF5I GGATG 1 cut(s) 280
BstKTI GATC 4 cut(s) 286, 424, 571, 868
BstMAI GTCTC 1 cut(s) 42
BstMBI GATC 4 cut(s) 283, 421, 568, 865
BstMWI GCNNNNNNNGC 5 cut(s) 76, 492, 632, 667, 853
BstNSI RCATGY 2 cut(s) 503, 584
BstV1I GCAGC 3 cut(s) 635, 856, 868
BstV2I GAAGAC 1 cut(s) 683
BsuRI GGCC 2 cut(s) 101, 306
BtsCI GGATG 1 cut(s) 280
BtsI GCAGTG 1 cut(s) 858
BtsIMutI CAGTG 3 cut(s) 626, 664, 858
BveI ACCTGC 1 cut(s) 509
Cac8I GCNNGC 6 cut(s) 240, 497, 501, 789, 849, 861
CaiI CAGNNNCTG 2 cut(s) 787, 797
Cfr13I GGNCC 2 cut(s) 510, 764
Csp6I GTAC 3 cut(s) 447, 541, 775
CviAII CATG 8 cut(s) 41, 71, 293, 442, 500, 537, 581, 770
CviJI RGCY 6 cut(s) 79, 101, 130, 306, 486, 811
CviKI_1 RGCY 6 cut(s) 79, 101, 130, 306, 486, 811
CviQI GTAC 3 cut(s) 447, 541, 775
DdeI CTNAG 1 cut(s) 807
DpnI GATC 4 cut(s) 285, 423, 570, 867
DpnII GATC 4 cut(s) 283, 421, 568, 865
DrdI GACNNNNNNGTC 1 cut(s) 372
DseDI GACNNNNNNGTC 1 cut(s) 372
EaeI YGGCCR 1 cut(s) 99
Eam1104I CTCTTC 1 cut(s) 452
EarI CTCTTC 1 cut(s) 452
Eco147I AGGCCT 1 cut(s) 306
Eco31I GGTCTC 1 cut(s) 42
Eco47I GGWCC 2 cut(s) 510, 764
Eco57I CTGAAG 2 cut(s) 363, 489
Eco88I CYCGRG 1 cut(s) 642
EcoO109I RGGNCCY 2 cut(s) 510, 764
EcoT22I ATGCAT 1 cut(s) 72
FaeI CATG 8 cut(s) 44, 74, 296, 445, 503, 540, 584, 773
FaqI GGGAC 1 cut(s) 777
FatI CATG 8 cut(s) 40, 70, 292, 441, 499, 536, 580, 769
FauI CCCGC 1 cut(s) 488
FauNDI CATATG 2 cut(s) 66, 745
FblI GTMKAC 1 cut(s) 255
Fnu4HI GCNGC 4 cut(s) 99, 624, 845, 857
FokI GGATG 1 cut(s) 287
Fsp4HI GCNGC 4 cut(s) 99, 624, 845, 857
FspBI CTAG 1 cut(s) 695
GluI GCNGC 4 cut(s) 99, 624, 845, 857
GsuI CTGGAG 3 cut(s) 471, 705, 894
HaeIII GGCC 2 cut(s) 101, 306
HapII CCGG 1 cut(s) 5
Hin1II CATG 8 cut(s) 44, 74, 296, 445, 503, 540, 584, 773
HindIII AAGCTT 1 cut(s) 484
HinfI GANTC 4 cut(s) 10, 82, 699, 794
HpaII CCGG 1 cut(s) 5
HphI GGTGA 1 cut(s) 128
Hpy166II GTNNAC 3 cut(s) 256, 447, 819
Hpy188I TCNGA 3 cut(s) 117, 216, 269
Hpy188III TCNNGA 4 cut(s) 377, 642, 781, 798
Hpy8I GTNNAC 3 cut(s) 256, 447, 819
HpyAV CCTTC 5 cut(s) 211, 264, 317, 467, 523
HpyCH4III ACNGT 4 cut(s) 31, 196, 231, 816
HpyCH4V TGCA 9 cut(s) 70, 224, 289, 536, 587, 623, 727, 844, 856
HpyF10VI GCNNNNNNNGC 5 cut(s) 76, 492, 632, 667, 853
HpyF3I CTNAG 1 cut(s) 807
Hsp92II CATG 8 cut(s) 44, 74, 296, 445, 503, 540, 584, 773
Kzo9I GATC 4 cut(s) 283, 421, 568, 865
Lsp1109I GCAGC 3 cut(s) 635, 856, 868
LweI GCATC 2 cut(s) 670, 774
MaeI CTAG 1 cut(s) 695
MaeIII GTNAC 3 cut(s) 231, 427, 719
MalI GATC 4 cut(s) 285, 423, 570, 867
MboI GATC 4 cut(s) 283, 421, 568, 865
MboII GAAGA 3 cut(s) 469, 683, 702
MluCI AATT 2 cut(s) 219, 728
MlyI GAGTC 2 cut(s) 708, 788
MmeI TCCRAC 2 cut(s) 127, 343
MnlI CCTC 6 cut(s) 51, 145, 381, 552, 680, 777
Mph1103I ATGCAT 1 cut(s) 72
MseI TTAA 3 cut(s) 338, 468, 837
MslI CAYNNNNRTG 1 cut(s) 69
MspA1I CMGCKG 1 cut(s) 332
MspI CCGG 1 cut(s) 5
MwoI GCNNNNNNNGC 5 cut(s) 76, 492, 632, 667, 853
NdeI CATATG 2 cut(s) 66, 745
NdeII GATC 4 cut(s) 283, 421, 568, 865
NlaIII CATG 8 cut(s) 44, 74, 296, 445, 503, 540, 584, 773
NlaIV GGNNCC 2 cut(s) 511, 765
NmuCI GTSAC 1 cut(s) 427
NsiI ATGCAT 1 cut(s) 72
NspI RCATGY 2 cut(s) 503, 584
PaeI GCATGC 1 cut(s) 503
PaeR7I CTCGAG 1 cut(s) 642
PceI AGGCCT 1 cut(s) 306
PfeI GAWTC 2 cut(s) 10, 82
PflFI GACNNNGTC 1 cut(s) 372
PflMI CCANNNNNTGG 1 cut(s) 787
PkrI GCNGC 4 cut(s) 100, 625, 846, 858
PleI GAGTC 2 cut(s) 707, 788
PpsI GAGTC 2 cut(s) 707, 788
PpuMI RGGWCCY 2 cut(s) 510, 764
PsiI TTATAA 1 cut(s) 326
Psp5II RGGWCCY 2 cut(s) 510, 764
PspN4I GGNNCC 2 cut(s) 511, 765
PspPI GGNCC 2 cut(s) 510, 764
PspPPI RGGWCCY 2 cut(s) 510, 764
PstNI CAGNNNCTG 2 cut(s) 787, 797
PsyI GACNNNGTC 1 cut(s) 372
RsaI GTAC 3 cut(s) 448, 542, 776
RsaNI GTAC 3 cut(s) 447, 541, 775
RseI CAYNNNNRTG 1 cut(s) 69
SaqAI TTAA 3 cut(s) 338, 468, 837
SatI GCNGC 4 cut(s) 99, 624, 845, 857
Sau3AI GATC 4 cut(s) 283, 421, 568, 865
Sau96I GGNCC 2 cut(s) 510, 764
SchI GAGTC 2 cut(s) 708, 788
SetI ASST 9 cut(s) 38, 62, 171, 373, 488, 523, 691, 769, 904
SfaNI GCATC 2 cut(s) 670, 774
Sfr274I CTCGAG 1 cut(s) 642
SinI GGWCC 2 cut(s) 510, 764
SlaI CTCGAG 1 cut(s) 642
SmiMI CAYNNNNRTG 1 cut(s) 69
SmlI CTYRAG 1 cut(s) 642
SmoI CTYRAG 1 cut(s) 642
SphI GCATGC 1 cut(s) 503
Sse9I AATT 2 cut(s) 219, 728
SseBI AGGCCT 1 cut(s) 306
SsiI CCGC 5 cut(s) 98, 139, 236, 330, 495
SspMI CTAG 1 cut(s) 695
StuI AGGCCT 1 cut(s) 306
TaaI ACNGT 4 cut(s) 31, 196, 231, 816
TaqI TCGA 2 cut(s) 643, 868
TasI AATT 2 cut(s) 219, 728
TatI WGTACW 1 cut(s) 446
TauI GCSGC 1 cut(s) 101
TfiI GAWTC 2 cut(s) 10, 82
Tru1I TTAA 3 cut(s) 338, 468, 837
Tru9I TTAA 3 cut(s) 338, 468, 837
TscAI CASTG 3 cut(s) 633, 671, 858
TseFI GTSAC 1 cut(s) 427
TseI GCWGC 3 cut(s) 623, 844, 856
Tsp45I GTSAC 1 cut(s) 427
TspDTI ATGAA 4 cut(s) 53, 253, 520, 702
TspRI CASTG 3 cut(s) 633, 671, 858
Tth111I GACNNNGTC 1 cut(s) 372
Van91I CCANNNNNTGG 1 cut(s) 787
VpaK11BI GGWCC 2 cut(s) 510, 764
XceI RCATGY 2 cut(s) 503, 584
XcmI CCANNNNNNNNNTGG 1 cut(s) 384
XhoI CTCGAG 1 cut(s) 642
XmiI GTMKAC 1 cut(s) 255
XspI CTAG 1 cut(s) 695
Zsp2I ATGCAT 1 cut(s) 72
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.