AT1G10630
ERF Family

Belongs to the small GTPase superfamily. Arf family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0011642
Physical Location & Seq
Reverse (-)
3512739 .. 3514824
2086 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G10630.2

Sequence Viewer

Length: 546 bp
ATGGGGCTTTCATTTGCAAAGCTTTTTAGCCGGCTTTTTGCCAAGAAGGAGATGCGAATCCTTATGGTTGGTCTTGATGCTGCTGGTAAGACCACCATTTTGTACAAGCTCAAGCTTGGTGAGATTGTCACCACCATTCCCACCATCGGGTTTAATGTGGAGACGGTTGAGTACAAGAACATCAGCTTCACGGTTTGGGATGTCGGGGGTCAGGACAAGATCCGTCCCTTGTGGAGACACTACTTCCAAAACACTCAAGGTCTGATATTTGTTGTTGATAGCAATGACAGAGACCGTGTTGTTGAAGCCAGAGATGAACTTCACAGGATGTTGAATGAAGATGAGCTTCGGGATGCAGTATTGCTTGTGTTTGCCAACAAGCAGGATCTTCCAAACGCTATGAATGCTGCTGAGATTACTGATAAGCTTGGCCTTCACTCACTCCGGCAACGCCACTGGTACATCCAAAGCACATGCGCAACTAGCGGTGAAGGGCTCTATGAAGGTCTGGATTGGCTTTCCAACAACATTGCTAGCAAAGCTTGA

Protein Analysis

181

Amino Acids

20.62

Weight (kDa)

6.43

Isoelectric Point (pI)

31.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Arf PF00025 6 - 177 1.7e-81 ADP-ribosylation factor family
SRPRB PF09439 16 - 143 4.8e-13 Signal recognition particle receptor beta subunit
Roc PF08477 19 - 129 8.3e-14 Ras of Complex, Roc, domain of DAPkinase
Ras PF00071 19 - 173 5.2e-12 Ras family
Gtr1_RagA PF04670 19 - 141 1.6e-09 Gtr1/RagA G protein conserved region
G-alpha PF00503 45 - 111 7.9e-10 G-protein alpha subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 478
AciI CCGC 1 cut(s) 486
AclWI GGATC 2 cut(s) 214, 393
AfaI GTAC 3 cut(s) 104, 173, 461
AfiI CCNNNNNNNGG 2 cut(s) 146, 147
AgsI TTSAA 2 cut(s) 305, 334
AluBI AGCT 7 cut(s) 22, 109, 115, 186, 346, 427, 542
AluI AGCT 7 cut(s) 22, 109, 115, 186, 346, 427, 542
Alw26I GTCTC 3 cut(s) 155, 229, 285
AlwI GGATC 2 cut(s) 214, 393
AoxI GGCC 1 cut(s) 430
ApeKI GCWGC 2 cut(s) 80, 407
ArsI GACNNNNNNTTYG 2 cut(s) 82, 114
AspLEI GCGC 1 cut(s) 479
AsuHPI GGTGA 3 cut(s) 121, 131, 500
AsuNHI GCTAGC 1 cut(s) 533
BanII GRGCYC 1 cut(s) 498
BbvI GCAGC 2 cut(s) 67, 394
BccI CCATC 1 cut(s) 152
BcoDI GTCTC 3 cut(s) 155, 229, 285
BfaI CTAG 2 cut(s) 483, 534
BisI GCNGC 2 cut(s) 81, 408
BlsI GCNGC 2 cut(s) 82, 409
BmsI GCATC 3 cut(s) 42, 67, 343
BmtI GCTAGC 1 cut(s) 537
BpuEI CTTGAG 2 cut(s) 95, 240
BsaBI GATNNNNATC 1 cut(s) 56
BsaI GGTCTC 1 cut(s) 285
Bsc4I CCNNNNNNNGG 2 cut(s) 146, 147
Bse118I RCCGGY 1 cut(s) 30
Bse1I ACTGG 1 cut(s) 461
Bse3DI GCAATG 2 cut(s) 289, 528
Bse8I GATNNNNATC 1 cut(s) 56
BseGI GGATG 4 cut(s) 205, 333, 358, 462
BseJI GATNNNNATC 1 cut(s) 56
BseLI CCNNNNNNNGG 2 cut(s) 146, 147
BseMI GCAATG 2 cut(s) 289, 528
BseMII CTCAG 1 cut(s) 402
BseNI ACTGG 1 cut(s) 461
BseXI GCAGC 2 cut(s) 67, 394
BshFI GGCC 1 cut(s) 432
BsiSI CCGG 2 cut(s) 31, 445
BslFI GGGAC 1 cut(s) 210
BslI CCNNNNNNNGG 2 cut(s) 146, 147
BsmAI GTCTC 3 cut(s) 155, 229, 285
BsmBI CGTCTC 1 cut(s) 155
BsmFI GGGAC 1 cut(s) 210
BsmI GAATGC 1 cut(s) 409
BsnI GGCC 1 cut(s) 432
Bso31I GGTCTC 1 cut(s) 285
Bsp1286I GDGCHC 1 cut(s) 498
Bsp1407I TGTACA 1 cut(s) 102
Bsp143I GATC 2 cut(s) 219, 385
BspACI CCGC 1 cut(s) 486
BspANI GGCC 1 cut(s) 432
BspCNI CTCAG 1 cut(s) 403
BspOI GCTAGC 1 cut(s) 537
BspPI GGATC 2 cut(s) 214, 393
BspTNI GGTCTC 1 cut(s) 285
BsrDI GCAATG 2 cut(s) 289, 528
BsrFI RCCGGY 1 cut(s) 30
BsrGI TGTACA 1 cut(s) 102
BsrI ACTGG 1 cut(s) 461
BssAI RCCGGY 1 cut(s) 30
BssMI GATC 2 cut(s) 219, 385
Bst4CI ACNGT 3 cut(s) 166, 193, 296
BstAUI TGTACA 1 cut(s) 102
BstC8I GCNNGC 2 cut(s) 32, 535
BstDEI CTNAG 1 cut(s) 411
BstF5I GGATG 4 cut(s) 205, 333, 358, 462
BstHHI GCGC 1 cut(s) 479
BstKTI GATC 2 cut(s) 222, 388
BstMAI GTCTC 3 cut(s) 155, 229, 285
BstMBI GATC 2 cut(s) 219, 385
BstMWI GCNNNNNNNGC 3 cut(s) 404, 483, 539
BstNSI RCATGY 1 cut(s) 477
BstV1I GCAGC 2 cut(s) 67, 394
BstX2I RGATCY 2 cut(s) 219, 385
BstYI RGATCY 2 cut(s) 219, 385
BsuRI GGCC 1 cut(s) 432
BtsCI GGATG 4 cut(s) 205, 333, 358, 462
BtsIMutI CAGTG 1 cut(s) 454
Cac8I GCNNGC 2 cut(s) 32, 535
CfoI GCGC 1 cut(s) 479
Cfr10I RCCGGY 1 cut(s) 30
Csp6I GTAC 3 cut(s) 103, 172, 460
CviAII CATG 1 cut(s) 474
CviQI GTAC 3 cut(s) 103, 172, 460
DdeI CTNAG 1 cut(s) 411
DpnI GATC 2 cut(s) 221, 387
DpnII GATC 2 cut(s) 219, 385
Eco24I GRGCYC 1 cut(s) 498
Eco31I GGTCTC 1 cut(s) 285
EcoT38I GRGCYC 1 cut(s) 498
Esp3I CGTCTC 1 cut(s) 155
FaeI CATG 1 cut(s) 477
FaiI YATR 4 cut(s) 65, 401, 475, 501
FalI AAGNNNNNCTT 2 cut(s) 330, 362
FaqI GGGAC 1 cut(s) 210
FatI CATG 1 cut(s) 473
Fnu4HI GCNGC 2 cut(s) 81, 408
FokI GGATG 4 cut(s) 212, 340, 365, 449
FriOI GRGCYC 1 cut(s) 498
Fsp4HI GCNGC 2 cut(s) 81, 408
FspBI CTAG 2 cut(s) 483, 534
FspI TGCGCA 1 cut(s) 478
GlaI GCGC 1 cut(s) 478
GluI GCNGC 2 cut(s) 81, 408
HaeIII GGCC 1 cut(s) 432
HapII CCGG 2 cut(s) 31, 445
HhaI GCGC 1 cut(s) 479
Hin1II CATG 1 cut(s) 477
Hin6I GCGC 1 cut(s) 477
HinP1I GCGC 1 cut(s) 477
HindIII AAGCTT 4 cut(s) 20, 113, 425, 540
HinfI GANTC 1 cut(s) 57
HpaII CCGG 2 cut(s) 31, 445
HphI GGTGA 3 cut(s) 121, 131, 500
Hpy188I TCNGA 1 cut(s) 264
Hpy188III TCNNGA 4 cut(s) 74, 212, 350, 509
HpyAV CCTTC 4 cut(s) 40, 443, 485, 497
HpyCH4III ACNGT 3 cut(s) 166, 193, 296
HpyCH4V TGCA 2 cut(s) 17, 356
HpyF10VI GCNNNNNNNGC 3 cut(s) 404, 483, 539
HpyF3I CTNAG 1 cut(s) 411
Hsp92II CATG 1 cut(s) 477
HspAI GCGC 1 cut(s) 477
KroI GCCGGC 1 cut(s) 30
KroNI GCCGGC 1 cut(s) 32
Kzo9I GATC 2 cut(s) 219, 385
LpnPI CCDG 9 cut(s) 44, 69, 197, 310, 322, 368, 442, 458, 494
Lsp1109I GCAGC 2 cut(s) 67, 394
LweI GCATC 3 cut(s) 42, 67, 343
MaeI CTAG 2 cut(s) 483, 534
MaeIII GTNAC 1 cut(s) 127
MalI GATC 2 cut(s) 221, 387
MboI GATC 2 cut(s) 219, 385
MboII GAAGA 2 cut(s) 350, 380
MflI RGATCY 2 cut(s) 219, 385
MhlI GDGCHC 1 cut(s) 498
MmeI TCCRAC 1 cut(s) 546
MroNI GCCGGC 1 cut(s) 30
MseI TTAA 1 cut(s) 153
MspI CCGG 2 cut(s) 31, 445
Mva1269I GAATGC 1 cut(s) 409
MwoI GCNNNNNNNGC 3 cut(s) 404, 483, 539
NaeI GCCGGC 1 cut(s) 32
NdeII GATC 2 cut(s) 219, 385
NgoMIV GCCGGC 1 cut(s) 30
NheI GCTAGC 1 cut(s) 533
NlaIII CATG 1 cut(s) 477
NmuCI GTSAC 1 cut(s) 127
NsbI TGCGCA 1 cut(s) 478
NspI RCATGY 1 cut(s) 477
PctI GAATGC 1 cut(s) 409
PdiI GCCGGC 1 cut(s) 32
PfeI GAWTC 1 cut(s) 57
PkrI GCNGC 2 cut(s) 82, 409
PsuI RGATCY 2 cut(s) 219, 385
RsaI GTAC 3 cut(s) 104, 173, 461
RsaNI GTAC 3 cut(s) 103, 172, 460
SaqAI TTAA 1 cut(s) 153
SatI GCNGC 2 cut(s) 81, 408
Sau3AI GATC 2 cut(s) 219, 385
SduI GDGCHC 1 cut(s) 498
SetI ASST 9 cut(s) 24, 111, 117, 188, 262, 348, 429, 508, 544
SfaNI GCATC 3 cut(s) 42, 67, 343
SmlI CTYRAG 2 cut(s) 110, 255
SmoI CTYRAG 2 cut(s) 110, 255
SsiI CCGC 1 cut(s) 486
SspMI CTAG 2 cut(s) 483, 534
TaaI ACNGT 3 cut(s) 166, 193, 296
TatI WGTACW 2 cut(s) 102, 171
TfiI GAWTC 1 cut(s) 57
Tru1I TTAA 1 cut(s) 153
Tru9I TTAA 1 cut(s) 153
TscAI CASTG 1 cut(s) 461
TseFI GTSAC 1 cut(s) 127
TseI GCWGC 2 cut(s) 80, 407
Tsp45I GTSAC 1 cut(s) 127
TspDTI ATGAA 4 cut(s) 330, 351, 416, 516
TspGWI ACGGA 1 cut(s) 212
TspRI CASTG 1 cut(s) 461
XceI RCATGY 1 cut(s) 477
XspI CTAG 2 cut(s) 483, 534
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.