Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0011642

Physical Location & Seq

Genomic Coordinates Forward (+)

1832014 .. 1833308

Gene Structure 1295 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0023000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGACAGAAGCACCATTACCTCCTCTCATATCCAACAACAACAACACCACTGGGATCACATTACAGGATCATCATGGTGGAGACCATGATAAGAAAGAAATGGTGAAACTCGAAGTTGATGGAGCAGGAGACTCGGCTTTGGTAGAGGCTAGATTCTCTGATGGGGTGTATGATAAGCCTCTATCATGCTTTGGTTGTGGCATTGGATGGTTCTCATTTCTATTGGGATTTGCTTTTCCTCCACTCTGGTACTATGCAACAGTGCTTTACTTTGGGAATTATCTTAAAGACCCTAGAGAGAGACCTGGCCTTGCAGCATCTGCAATTGCAGCTTTAATTTGCTCAGTCGTCTTGGTTGTCCTGCTTTTCTCACTTTTCTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006464 GO:0006471 GO:0006807 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016192 GO:0019538 GO:0033036 GO:0034613 GO:0036211 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04072 ko04144 ko05110 ko05134 map04072 map04144 map05110 map05134

Pfam Domains

Protein Families

Arf

Protein Analysis

127

Amino Acids

13.8

Weight (kDa)

4.92

Isoelectric Point (pI)

26.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011642)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10630 AT1G10630
fragaria_vesca	FvH4_4g21070 FvH4_4g21070 FvH4_6g08050 FvH4_6g08050
prunus_persica	Prupe.6G308600_v2.0.a1 Prupe.6G308600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0457721
rosa_laevigata	RLG00000025191
rosa_multiflora	Rmu_sc0007395.1_g000001 Rmu_sc0028418.1_g000001
rosa_roxburghii	Rroxscaffold_6G00421540
rosa_rugosa	Rorug03G0022800 Rorug03G0022900 Rorug03G0023000
rosa_samantha	Rh3AG083600 Rh3BG086100 Rh3DG087000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	62, 75
AfaI	GTAC	1 cut(s)	251
AjnI	CCWGG	1 cut(s)	304
AluBI	AGCT	1 cut(s)	332
AluI	AGCT	1 cut(s)	332
Alw26I	GTCTC	3 cut(s)	75, 123, 295
AlwI	GGATC	2 cut(s)	62, 75
AlwNI	CAGNNNCTG	1 cut(s)	320
AoxI	GGCC	1 cut(s)	307
ApeKI	GCWGC	2 cut(s)	314, 329
AsuHPI	GGTGA	1 cut(s)	115
BarI	GAAGNNNNNNTAC	1 cut(s)	32
BbvI	GCAGC	2 cut(s)	326, 341
BccI	CCATC	3 cut(s)	113, 155, 201
BcgI	CGANNNNNNTGC	2 cut(s)	114, 148
BciT130I	CCWGG	1 cut(s)	306
BcoDI	GTCTC	3 cut(s)	75, 123, 295
BfaI	CTAG	2 cut(s)	150, 294
BisI	GCNGC	2 cut(s)	315, 330
BlsI	GCNGC	2 cut(s)	316, 331
Bme1390I	CCNGG	1 cut(s)	306
BmrFI	CCNGG	1 cut(s)	306
BmrI	ACTGGG	1 cut(s)	60
BmsI	GCATC	1 cut(s)	326
BmuI	ACTGGG	1 cut(s)	60
BsaI	GGTCTC	2 cut(s)	75, 295
Bse1I	ACTGG	1 cut(s)	55
BseBI	CCWGG	1 cut(s)	306
BseGI	GGATG	1 cut(s)	212
BseMII	CTCAG	1 cut(s)	357
BseNI	ACTGG	1 cut(s)	55
BseRI	GAGGAG	1 cut(s)	12
BseXI	GCAGC	2 cut(s)	326, 341
BshFI	GGCC	1 cut(s)	309
BsmAI	GTCTC	3 cut(s)	75, 123, 295
BsnI	GGCC	1 cut(s)	309
Bso31I	GGTCTC	2 cut(s)	75, 295
Bsp143I	GATC	2 cut(s)	54, 67
BspANI	GGCC	1 cut(s)	309
BspCNI	CTCAG	1 cut(s)	356
BspPI	GGATC	2 cut(s)	62, 75
BspTNI	GGTCTC	2 cut(s)	75, 295
BsrI	ACTGG	1 cut(s)	55
BssMI	GATC	2 cut(s)	54, 67
Bst2UI	CCWGG	1 cut(s)	306
Bst4CI	ACNGT	1 cut(s)	262
BstAPI	GCANNNNNTGC	1 cut(s)	320
BstDEI	CTNAG	2 cut(s)	343, 381
BstF5I	GGATG	1 cut(s)	212
BstKTI	GATC	2 cut(s)	57, 70
BstMAI	GTCTC	3 cut(s)	75, 123, 295
BstMBI	GATC	2 cut(s)	54, 67
BstMWI	GCNNNNNNNGC	2 cut(s)	320, 329
BstNI	CCWGG	1 cut(s)	306
BstSCI	CCNGG	1 cut(s)	304
BstV1I	GCAGC	2 cut(s)	326, 341
BsuRI	GGCC	1 cut(s)	309
BtsCI	GGATG	1 cut(s)	212
BtsIMutI	CAGTG	2 cut(s)	48, 267
CaiI	CAGNNNCTG	1 cut(s)	320
Csp6I	GTAC	1 cut(s)	250
CviAII	CATG	3 cut(s)	74, 86, 186
CviJI	RGCY	5 cut(s)	137, 149, 178, 309, 332
CviKI_1	RGCY	5 cut(s)	137, 149, 178, 309, 332
CviQI	GTAC	1 cut(s)	250
DdeI	CTNAG	2 cut(s)	343, 381
DpnI	GATC	2 cut(s)	56, 69
DpnII	GATC	2 cut(s)	54, 67
Eco31I	GGTCTC	2 cut(s)	75, 295
EcoRII	CCWGG	1 cut(s)	304
FaeI	CATG	3 cut(s)	77, 89, 189
FaiI	YATR	6 cut(s)	29, 75, 87, 171, 187, 255
FatI	CATG	3 cut(s)	73, 85, 185
Fnu4HI	GCNGC	2 cut(s)	315, 330
FokI	GGATG	1 cut(s)	219
Fsp4HI	GCNGC	2 cut(s)	315, 330
FspBI	CTAG	2 cut(s)	150, 294
GluI	GCNGC	2 cut(s)	315, 330
HaeIII	GGCC	1 cut(s)	309
Hin1II	CATG	3 cut(s)	77, 89, 189
HinfI	GANTC	2 cut(s)	131, 153
HphI	GGTGA	1 cut(s)	115
Hpy188I	TCNGA	1 cut(s)	160
HpyCH4III	ACNGT	1 cut(s)	262
HpyCH4V	TGCA	4 cut(s)	257, 314, 323, 329
HpyF10VI	GCNNNNNNNGC	2 cut(s)	320, 329
HpyF3I	CTNAG	2 cut(s)	343, 381
Hsp92II	CATG	3 cut(s)	77, 89, 189
Kzo9I	GATC	2 cut(s)	54, 67
LmnI	GCTCC	1 cut(s)	122
LpnPI	CCDG	7 cut(s)	36, 50, 111, 232, 291, 318, 374
Lsp1109I	GCAGC	2 cut(s)	326, 341
LweI	GCATC	1 cut(s)	326
MaeI	CTAG	2 cut(s)	150, 294
MalI	GATC	2 cut(s)	56, 69
MboI	GATC	2 cut(s)	54, 67
MfeI	CAATTG	1 cut(s)	324
MluCI	AATT	3 cut(s)	277, 324, 336
MlyI	GAGTC	1 cut(s)	125
MmeI	TCCRAC	1 cut(s)	57
MnlI	CCTC	5 cut(s)	30, 33, 139, 189, 249
MseI	TTAA	2 cut(s)	285, 335
MslI	CAYNNNNRTG	1 cut(s)	75
MspR9I	CCNGG	1 cut(s)	306
MunI	CAATTG	1 cut(s)	324
MvaI	CCWGG	1 cut(s)	306
MwoI	GCNNNNNNNGC	2 cut(s)	320, 329
NdeII	GATC	2 cut(s)	54, 67
NlaIII	CATG	3 cut(s)	77, 89, 189
NmeAIII	GCCGAG	1 cut(s)	113
PfeI	GAWTC	1 cut(s)	153
PkrI	GCNGC	2 cut(s)	316, 331
PleI	GAGTC	1 cut(s)	125
PpsI	GAGTC	1 cut(s)	125
Psp6I	CCWGG	1 cut(s)	304
PspGI	CCWGG	1 cut(s)	304
PstNI	CAGNNNCTG	1 cut(s)	320
RsaI	GTAC	1 cut(s)	251
RsaNI	GTAC	1 cut(s)	250
RseI	CAYNNNNRTG	1 cut(s)	75
SaqAI	TTAA	2 cut(s)	285, 335
SatI	GCNGC	2 cut(s)	315, 330
Sau3AI	GATC	2 cut(s)	54, 67
SchI	GAGTC	1 cut(s)	125
ScrFI	CCNGG	1 cut(s)	306
SetI	ASST	3 cut(s)	22, 307, 334
SfaNI	GCATC	1 cut(s)	326
SmiMI	CAYNNNNRTG	1 cut(s)	75
Sse9I	AATT	3 cut(s)	277, 324, 336
SspMI	CTAG	2 cut(s)	150, 294
StyD4I	CCNGG	1 cut(s)	304
TaaI	ACNGT	1 cut(s)	262
TaqI	TCGA	1 cut(s)	111
TasI	AATT	3 cut(s)	277, 324, 336
TfiI	GAWTC	1 cut(s)	153
Tru1I	TTAA	2 cut(s)	285, 335
Tru9I	TTAA	2 cut(s)	285, 335
TscAI	CASTG	2 cut(s)	55, 267
TseI	GCWGC	2 cut(s)	314, 329
TspRI	CASTG	2 cut(s)	55, 267
XspI	CTAG	2 cut(s)	150, 294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.