Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0011642

Physical Location & Seq

Genomic Coordinates Forward (+)

42687086 .. 42690195

Gene Structure 3110 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00421540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGGGGTTGTCTTTCACCAAGTTGTTCAGTCGGCTTTTTGCCAAGAAGGAAATGAGAATTCTTATGGTCGGTCTCGATGCTGCGGGTAAAACTACCATTTTGTACAAGCTCAAGCTCGGAGAGATTGTGACCACCATTCCTACCATCGGATTCAATGTTGAAACTGTGGAGTACAAGAACATTAGCTTTACCGTGTGGGATGTTGGGGGTCAGGACAAGATTCGACCTTTATGGAGACACTACTTCCAAAATACACAAGGGCTCATTTTTGTGGTTGACAGCAATGATCGTGATCGTGTTGTTGAGGCTAGGGATGAGCTTCACCGCATGTTGAATGAGGACGAGTTGAGGGATGCTGTGCTGCTTGTATTTGCCAACAAGCAGGATCTTCCAAATGCTATGAATGCTGCAGAGATCACTGACAAACTTGGTCTCCACTCTCTTCGTCAACGCCACTGGTACATCCAGAGTACATGTGCCACTTCTGGGGAAGGGCTCTATGAGGGTCTTGACTGGCTCTCAAACAATATCGCAAACAAGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006464 GO:0006471 GO:0006807 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016192 GO:0019538 GO:0033036 GO:0034613 GO:0036211 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04072 ko04144 ko05110 ko05134 map04072 map04144 map05110 map05134

Pfam Domains

Protein Families

Arf

Protein Analysis

181

Amino Acids

20.68

Weight (kDa)

6.43

Isoelectric Point (pI)

32.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	5 - 177	1.2e-81	ADP-ribosylation factor family
SRPRB	PF09439	16 - 143	4.8e-13	Signal recognition particle receptor beta subunit
Roc	PF08477	19 - 129	8.3e-14	Ras of Complex, Roc, domain of DAPkinase
Ras	PF00071	19 - 173	5e-12	Ras family
Gtr1_RagA	PF04670	19 - 141	1.6e-09	Gtr1/RagA G protein conserved region
G-alpha	PF00503	45 - 111	7.9e-10	G-protein alpha subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0011642)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10630 AT1G10630
fragaria_vesca	FvH4_4g21070 FvH4_4g21070 FvH4_6g08050 FvH4_6g08050
prunus_persica	Prupe.6G308600_v2.0.a1 Prupe.6G308600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0457721
rosa_laevigata	RLG00000025191
rosa_multiflora	Rmu_sc0007395.1_g000001 Rmu_sc0028418.1_g000001
rosa_roxburghii	Rroxscaffold_6G00421540
rosa_rugosa	Rorug03G0022800 Rorug03G0022900 Rorug03G0023000
rosa_samantha	Rh3AG083600 Rh3BG086100 Rh3DG087000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	83, 325
AclWI	GGATC	1 cut(s)	393
AcsI	RAATTY	1 cut(s)	57
AfaI	GTAC	4 cut(s)	104, 173, 461, 472
AfiI	CCNNNNNNNGG	2 cut(s)	146, 486
AflIII	ACRYGT	1 cut(s)	473
AgsI	TTSAA	3 cut(s)	154, 161, 334
AluBI	AGCT	4 cut(s)	109, 115, 186, 319
AluI	AGCT	4 cut(s)	109, 115, 186, 319
Alw26I	GTCTC	3 cut(s)	77, 229, 437
AlwI	GGATC	1 cut(s)	393
ApeKI	GCWGC	3 cut(s)	80, 361, 407
ApoI	RAATTY	1 cut(s)	57
AsuHPI	GGTGA	2 cut(s)	7, 314
BanII	GRGCYC	2 cut(s)	264, 498
BbvI	GCAGC	3 cut(s)	67, 348, 394
BccI	CCATC	1 cut(s)	152
BcoDI	GTCTC	3 cut(s)	77, 229, 437
BfaI	CTAG	1 cut(s)	309
BfmI	CTRYAG	1 cut(s)	408
BisI	GCNGC	3 cut(s)	81, 362, 408
BlsI	GCNGC	3 cut(s)	82, 363, 409
BmsI	GCATC	2 cut(s)	67, 343
BpuEI	CTTGAG	1 cut(s)	95
BsaBI	GATNNNNATC	1 cut(s)	291
BsaI	GGTCTC	2 cut(s)	77, 437
BsaXI	ACNNNNNCTCC	4 cut(s)	111, 141, 417, 447
Bsc4I	CCNNNNNNNGG	2 cut(s)	146, 486
Bse1I	ACTGG	2 cut(s)	461, 518
Bse3DI	GCAATG	1 cut(s)	289
Bse8I	GATNNNNATC	1 cut(s)	291
BseGI	GGATG	4 cut(s)	205, 319, 358, 462
BseJI	GATNNNNATC	1 cut(s)	291
BseLI	CCNNNNNNNGG	2 cut(s)	146, 486
BseMI	GCAATG	1 cut(s)	289
BseNI	ACTGG	2 cut(s)	461, 518
BseXI	GCAGC	3 cut(s)	67, 348, 394
BslI	CCNNNNNNNGG	2 cut(s)	146, 486
BsmAI	GTCTC	3 cut(s)	77, 229, 437
BsmI	GAATGC	1 cut(s)	409
Bso31I	GGTCTC	2 cut(s)	77, 437
Bsp1286I	GDGCHC	2 cut(s)	264, 498
Bsp1407I	TGTACA	1 cut(s)	102
Bsp143I	GATC	4 cut(s)	286, 292, 385, 414
BspACI	CCGC	2 cut(s)	83, 325
BspMAI	CTGCAG	1 cut(s)	412
BspPI	GGATC	1 cut(s)	393
BspTNI	GGTCTC	2 cut(s)	77, 437
BsrDI	GCAATG	1 cut(s)	289
BsrGI	TGTACA	1 cut(s)	102
BsrI	ACTGG	2 cut(s)	461, 518
BssMI	GATC	4 cut(s)	286, 292, 385, 414
Bst4CI	ACNGT	2 cut(s)	166, 193
Bst6I	CTCTTC	1 cut(s)	447
BstAUI	TGTACA	1 cut(s)	102
BstF5I	GGATG	4 cut(s)	205, 319, 358, 462
BstKTI	GATC	4 cut(s)	289, 295, 388, 417
BstMAI	GTCTC	3 cut(s)	77, 229, 437
BstMBI	GATC	4 cut(s)	286, 292, 385, 414
BstMWI	GCNNNNNNNGC	2 cut(s)	404, 539
BstNSI	RCATGY	2 cut(s)	331, 477
BstSFI	CTRYAG	1 cut(s)	408
BstV1I	GCAGC	3 cut(s)	67, 348, 394
BstX2I	RGATCY	1 cut(s)	385
BstYI	RGATCY	1 cut(s)	385
BtsCI	GGATG	4 cut(s)	205, 319, 358, 462
BtsIMutI	CAGTG	2 cut(s)	417, 454
Csp6I	GTAC	4 cut(s)	103, 172, 460, 471
CviAII	CATG	2 cut(s)	328, 474
CviQI	GTAC	4 cut(s)	103, 172, 460, 471
DpnI	GATC	4 cut(s)	288, 294, 387, 416
DpnII	GATC	4 cut(s)	286, 292, 385, 414
Eam1104I	CTCTTC	1 cut(s)	447
EarI	CTCTTC	1 cut(s)	447
Eco24I	GRGCYC	2 cut(s)	264, 498
Eco31I	GGTCTC	2 cut(s)	77, 437
EcoRI	GAATTC	1 cut(s)	57
EcoT38I	GRGCYC	2 cut(s)	264, 498
FaeI	CATG	2 cut(s)	331, 477
FaiI	YATR	6 cut(s)	65, 232, 329, 401, 475, 501
FatI	CATG	2 cut(s)	327, 473
FauI	CCCGC	1 cut(s)	76
Fnu4HI	GCNGC	3 cut(s)	81, 362, 408
FokI	GGATG	4 cut(s)	212, 326, 365, 449
FriOI	GRGCYC	2 cut(s)	264, 498
Fsp4HI	GCNGC	3 cut(s)	81, 362, 408
FspBI	CTAG	1 cut(s)	309
GluI	GCNGC	3 cut(s)	81, 362, 408
Hin1II	CATG	2 cut(s)	331, 477
HincII	GTYRAC	2 cut(s)	277, 449
HindII	GTYRAC	2 cut(s)	277, 449
HinfI	GANTC	2 cut(s)	150, 220
HphI	GGTGA	2 cut(s)	7, 314
Hpy166II	GTNNAC	2 cut(s)	277, 449
Hpy188I	TCNGA	2 cut(s)	119, 149
Hpy188III	TCNNGA	5 cut(s)	74, 212, 290, 466, 509
Hpy8I	GTNNAC	2 cut(s)	277, 449
HpyAV	CCTTC	2 cut(s)	40, 485
HpyCH4III	ACNGT	2 cut(s)	166, 193
HpyCH4V	TGCA	1 cut(s)	410
HpyF10VI	GCNNNNNNNGC	2 cut(s)	404, 539
Hsp92II	CATG	2 cut(s)	331, 477
Kzo9I	GATC	4 cut(s)	286, 292, 385, 414
LpnPI	CCDG	6 cut(s)	197, 368, 442, 471, 479, 499
Lsp1109I	GCAGC	3 cut(s)	67, 348, 394
LweI	GCATC	2 cut(s)	67, 343
MaeI	CTAG	1 cut(s)	309
MaeIII	GTNAC	1 cut(s)	127
MalI	GATC	4 cut(s)	288, 294, 387, 416
MboI	GATC	4 cut(s)	286, 292, 385, 414
MboII	GAAGA	2 cut(s)	380, 434
MflI	RGATCY	1 cut(s)	385
MhlI	GDGCHC	2 cut(s)	264, 498
MluCI	AATT	1 cut(s)	57
MnlI	CCTC	4 cut(s)	298, 331, 342, 496
MseI	TTAA	1 cut(s)	544
MslI	CAYNNNNRTG	1 cut(s)	269
Mva1269I	GAATGC	1 cut(s)	409
MwoI	GCNNNNNNNGC	2 cut(s)	404, 539
NdeII	GATC	4 cut(s)	286, 292, 385, 414
NlaIII	CATG	2 cut(s)	331, 477
NmuCI	GTSAC	1 cut(s)	127
NspI	RCATGY	2 cut(s)	331, 477
PciI	ACATGT	1 cut(s)	473
PctI	GAATGC	1 cut(s)	409
PfeI	GAWTC	2 cut(s)	150, 220
PkrI	GCNGC	3 cut(s)	82, 363, 409
PscI	ACATGT	1 cut(s)	473
PstI	CTGCAG	1 cut(s)	412
PsuI	RGATCY	1 cut(s)	385
RsaI	GTAC	4 cut(s)	104, 173, 461, 472
RsaNI	GTAC	4 cut(s)	103, 172, 460, 471
RseI	CAYNNNNRTG	1 cut(s)	269
SaqAI	TTAA	1 cut(s)	544
SatI	GCNGC	3 cut(s)	81, 362, 408
Sau3AI	GATC	4 cut(s)	286, 292, 385, 414
SduI	GDGCHC	2 cut(s)	264, 498
SetI	ASST	5 cut(s)	111, 117, 188, 229, 321
SfaNI	GCATC	2 cut(s)	67, 343
SfcI	CTRYAG	1 cut(s)	408
SmiMI	CAYNNNNRTG	1 cut(s)	269
SmlI	CTYRAG	1 cut(s)	110
SmoI	CTYRAG	1 cut(s)	110
Sse9I	AATT	1 cut(s)	57
SsiI	CCGC	2 cut(s)	83, 325
SspMI	CTAG	1 cut(s)	309
TaaI	ACNGT	2 cut(s)	166, 193
TaqI	TCGA	2 cut(s)	75, 223
TaqII	GACCGA	1 cut(s)	59
TasI	AATT	1 cut(s)	57
TatI	WGTACW	3 cut(s)	102, 171, 470
TfiI	GAWTC	2 cut(s)	150, 220
Tru1I	TTAA	1 cut(s)	544
Tru9I	TTAA	1 cut(s)	544
TscAI	CASTG	2 cut(s)	424, 461
TseFI	GTSAC	1 cut(s)	127
TseI	GCWGC	3 cut(s)	80, 361, 407
Tsp45I	GTSAC	1 cut(s)	127
TspDTI	ATGAA	1 cut(s)	416
TspRI	CASTG	2 cut(s)	424, 461
XapI	RAATTY	1 cut(s)	57
XceI	RCATGY	2 cut(s)	331, 477
XspI	CTAG	1 cut(s)	309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.