Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0011642

Physical Location & Seq

Genomic Coordinates Forward (+)

24207591 .. 24210594

Gene Structure 3004 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g21070.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGGGGCTGTCGTTCACCAAACTTCTCAGCAGACTGTTTGCTAAGAAAGAGATGCGTATTCTTATGGTGGGTCTTGATGCGGCCGGTAAGACCACCATTTTGTATAAGCTGAAGTTAGGCGAAATCGTTACCACCATTCCTACCATTGGATTTAATGTGGAAACAGTGGAATACAAAAACATCAGCTTCACTGTGTGGGATGTTGGGGGTCAAGATAAGATTCGACCTCTGTGGAGACACTACTTCCAAAACACACAAGGGCTTATCTTTGTGGTTGACAGCAATGACCGAGATCGTGCTGTTGAGGCTAGAGATGAGGTGCACAGGATGTTGAATGAGGACGAGTTGAGGGATGCTGTGCTTCTTGTCTTTGCAAACAAGCAAGATCTTCCAAATGCCATGAATGCTGATGAAATCACCGATAAGCTTGGCCTTCATTCTCTTCGACAACGCCACTGGTATATCCAGAGTACATGTGCCACTTCCGGTGAAGGCTTGTATGAGGGATTAGACTGGCTTTCAAACAACATTGCTAACAAGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006464 GO:0006471 GO:0006807 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016192 GO:0019538 GO:0033036 GO:0034613 GO:0036211 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04072 ko04144 ko05110 ko05134 map04072 map04144 map05110 map05134

Pfam Domains

Protein Families

Arf

Protein Analysis

182

Amino Acids

20.65

Weight (kDa)

6.09

Isoelectric Point (pI)

32.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	5 - 177	1.7e-80	ADP-ribosylation factor family
SRPRB	PF09439	16 - 143	1.6e-12	Signal recognition particle receptor beta subunit
Roc	PF08477	19 - 129	1.1e-13	Ras of Complex, Roc, domain of DAPkinase
Ras	PF00071	19 - 174	7.4e-12	Ras family
Gtr1_RagA	PF04670	19 - 141	3e-09	Gtr1/RagA G protein conserved region
G-alpha	PF00503	45 - 111	9.2e-10	G-protein alpha subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0011642)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10630 AT1G10630
fragaria_vesca	FvH4_4g21070 FvH4_4g21070 FvH4_6g08050 FvH4_6g08050
prunus_persica	Prupe.6G308600_v2.0.a1 Prupe.6G308600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0457721
rosa_laevigata	RLG00000025191
rosa_multiflora	Rmu_sc0007395.1_g000001 Rmu_sc0028418.1_g000001
rosa_roxburghii	Rroxscaffold_6G00421540
rosa_rugosa	Rorug03G0022800 Rorug03G0022900 Rorug03G0023000
rosa_samantha	Rh3AG083600 Rh3BG086100 Rh3DG087000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	80
AcoI	YGGCCR	1 cut(s)	81
AcuI	CTGAAG	1 cut(s)	131
AdeI	CACNNNGTG	1 cut(s)	195
AfaI	GTAC	1 cut(s)	472
AfiI	CCNNNNNNNGG	1 cut(s)	146
AflIII	ACRYGT	1 cut(s)	473
AgsI	TTSAA	2 cut(s)	334, 522
AluBI	AGCT	3 cut(s)	109, 186, 427
AluI	AGCT	3 cut(s)	109, 186, 427
Alw21I	GWGCWC	1 cut(s)	324
Alw26I	GTCTC	1 cut(s)	229
Alw44I	GTGCAC	1 cut(s)	320
AoxI	GGCC	2 cut(s)	81, 430
ApaLI	GTGCAC	1 cut(s)	320
ArsI	GACNNNNNNTTYG	2 cut(s)	82, 114
AsuHPI	GGTGA	3 cut(s)	7, 409, 500
BaeGI	GKGCMC	1 cut(s)	324
Bbv12I	GWGCWC	1 cut(s)	324
BcoDI	GTCTC	1 cut(s)	229
BfaI	CTAG	1 cut(s)	309
BglII	AGATCT	1 cut(s)	385
BisI	GCNGC	1 cut(s)	81
BlsI	GCNGC	1 cut(s)	82
BmsI	GCATC	3 cut(s)	42, 67, 343
BsaWI	WCCGGW	1 cut(s)	485
Bsc4I	CCNNNNNNNGG	1 cut(s)	146
Bse118I	RCCGGY	1 cut(s)	83
Bse1I	ACTGG	2 cut(s)	461, 518
Bse3DI	GCAATG	2 cut(s)	289, 528
BseGI	GGATG	3 cut(s)	205, 333, 358
BseLI	CCNNNNNNNGG	1 cut(s)	146
BseMI	GCAATG	2 cut(s)	289, 528
BseMII	CTCAG	1 cut(s)	40
BseNI	ACTGG	2 cut(s)	461, 518
BseSI	GKGCMC	1 cut(s)	324
BseX3I	CGGCCG	1 cut(s)	81
Bsh1285I	CGRYCG	1 cut(s)	84
BshFI	GGCC	2 cut(s)	83, 432
BsiEI	CGRYCG	1 cut(s)	84
BsiHKAI	GWGCWC	1 cut(s)	324
BsiSI	CCGG	2 cut(s)	84, 486
BslI	CCNNNNNNNGG	1 cut(s)	146
BsmAI	GTCTC	1 cut(s)	229
BsmI	GAATGC	1 cut(s)	409
BsnI	GGCC	2 cut(s)	83, 432
Bsp1286I	GDGCHC	1 cut(s)	324
Bsp143I	GATC	2 cut(s)	292, 385
BspACI	CCGC	1 cut(s)	80
BspANI	GGCC	2 cut(s)	83, 432
BspCNI	CTCAG	1 cut(s)	39
BsrDI	GCAATG	2 cut(s)	289, 528
BsrFI	RCCGGY	1 cut(s)	83
BsrI	ACTGG	2 cut(s)	461, 518
BssAI	RCCGGY	1 cut(s)	83
BssMI	GATC	2 cut(s)	292, 385
Bst4CI	ACNGT	3 cut(s)	36, 166, 193
Bst6I	CTCTTC	1 cut(s)	447
BstDEI	CTNAG	2 cut(s)	26, 42
BstF5I	GGATG	3 cut(s)	205, 333, 358
BstKTI	GATC	2 cut(s)	295, 388
BstMAI	GTCTC	1 cut(s)	229
BstMBI	GATC	2 cut(s)	292, 385
BstMCI	CGRYCG	1 cut(s)	84
BstMWI	GCNNNNNNNGC	3 cut(s)	305, 404, 539
BstNSI	RCATGY	1 cut(s)	477
BstSLI	GKGCMC	1 cut(s)	324
BstX2I	RGATCY	1 cut(s)	385
BstYI	RGATCY	1 cut(s)	385
BstZI	CGGCCG	1 cut(s)	81
BsuRI	GGCC	2 cut(s)	83, 432
BtsCI	GGATG	3 cut(s)	205, 333, 358
BtsIMutI	CAGTG	3 cut(s)	171, 189, 454
Cfr10I	RCCGGY	1 cut(s)	83
Csp6I	GTAC	1 cut(s)	471
CviAII	CATG	2 cut(s)	400, 474
CviQI	GTAC	1 cut(s)	471
DdeI	CTNAG	2 cut(s)	26, 42
DpnI	GATC	2 cut(s)	294, 387
DpnII	GATC	2 cut(s)	292, 385
DraIII	CACNNNGTG	1 cut(s)	195
EaeI	YGGCCR	1 cut(s)	81
EagI	CGGCCG	1 cut(s)	81
Eam1104I	CTCTTC	1 cut(s)	447
EarI	CTCTTC	1 cut(s)	447
EclXI	CGGCCG	1 cut(s)	81
Eco52I	CGGCCG	1 cut(s)	81
Eco57I	CTGAAG	1 cut(s)	131
FaeI	CATG	2 cut(s)	403, 477
FaiI	YATR	6 cut(s)	65, 105, 401, 462, 475, 501
FatI	CATG	2 cut(s)	399, 473
Fnu4HI	GCNGC	1 cut(s)	81
FokI	GGATG	3 cut(s)	212, 340, 365
Fsp4HI	GCNGC	1 cut(s)	81
FspBI	CTAG	1 cut(s)	309
GluI	GCNGC	1 cut(s)	81
HaeIII	GGCC	2 cut(s)	83, 432
HapII	CCGG	2 cut(s)	84, 486
Hin1II	CATG	2 cut(s)	403, 477
HincII	GTYRAC	1 cut(s)	277
HindII	GTYRAC	1 cut(s)	277
HindIII	AAGCTT	1 cut(s)	425
HinfI	GANTC	1 cut(s)	220
HpaII	CCGG	2 cut(s)	84, 486
HphI	GGTGA	3 cut(s)	7, 409, 500
Hpy166II	GTNNAC	3 cut(s)	15, 277, 322
Hpy188III	TCNNGA	3 cut(s)	74, 212, 466
Hpy8I	GTNNAC	3 cut(s)	15, 277, 322
HpyAV	CCTTC	2 cut(s)	443, 485
HpyCH4III	ACNGT	3 cut(s)	36, 166, 193
HpyCH4V	TGCA	2 cut(s)	322, 374
HpyF10VI	GCNNNNNNNGC	3 cut(s)	305, 404, 539
HpyF3I	CTNAG	2 cut(s)	26, 42
Hsp92II	CATG	2 cut(s)	403, 477
Kzo9I	GATC	2 cut(s)	292, 385
LpnPI	CCDG	6 cut(s)	97, 310, 442, 479, 499, 499
LweI	GCATC	3 cut(s)	42, 67, 343
MaeI	CTAG	1 cut(s)	309
MaeIII	GTNAC	1 cut(s)	127
MalI	GATC	2 cut(s)	294, 387
MboI	GATC	2 cut(s)	292, 385
MboII	GAAGA	2 cut(s)	380, 434
MflI	RGATCY	1 cut(s)	385
MhlI	GDGCHC	1 cut(s)	324
MnlI	CCTC	6 cut(s)	237, 298, 310, 331, 342, 496
MseI	TTAA	2 cut(s)	153, 544
MspI	CCGG	2 cut(s)	84, 486
Mva1269I	GAATGC	1 cut(s)	409
MwoI	GCNNNNNNNGC	3 cut(s)	305, 404, 539
NdeII	GATC	2 cut(s)	292, 385
NlaIII	CATG	2 cut(s)	403, 477
NspI	RCATGY	1 cut(s)	477
PciI	ACATGT	1 cut(s)	473
PctI	GAATGC	1 cut(s)	409
PfeI	GAWTC	1 cut(s)	220
PkrI	GCNGC	1 cut(s)	82
PscI	ACATGT	1 cut(s)	473
PsuI	RGATCY	1 cut(s)	385
RsaI	GTAC	1 cut(s)	472
RsaNI	GTAC	1 cut(s)	471
SaqAI	TTAA	2 cut(s)	153, 544
SatI	GCNGC	1 cut(s)	81
Sau3AI	GATC	2 cut(s)	292, 385
SduI	GDGCHC	1 cut(s)	324
SetI	ASST	5 cut(s)	111, 188, 229, 321, 429
SfaNI	GCATC	3 cut(s)	42, 67, 343
SsiI	CCGC	1 cut(s)	80
SspMI	CTAG	1 cut(s)	309
TaaI	ACNGT	3 cut(s)	36, 166, 193
TaqI	TCGA	2 cut(s)	223, 445
TaqII	GACCGA	1 cut(s)	303
TatI	WGTACW	1 cut(s)	470
TauI	GCSGC	1 cut(s)	83
TfiI	GAWTC	1 cut(s)	220
Tru1I	TTAA	2 cut(s)	153, 544
Tru9I	TTAA	2 cut(s)	153, 544
TscAI	CASTG	3 cut(s)	171, 196, 461
TspDTI	ATGAA	3 cut(s)	416, 425, 426
TspRI	CASTG	3 cut(s)	171, 196, 461
VneI	GTGCAC	1 cut(s)	320
XceI	RCATGY	1 cut(s)	477
XspI	CTAG	1 cut(s)	309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.